Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.42■□□□□ 0.229e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.019e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.96□□□□□ -0.019e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-206ENST00000506483 848 ntTSL 311.36□□□□□ -0.599e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.02□□□□□ -1.299e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-219ENST00000514613 2523 ntTSL 26.93□□□□□ -1.39e-13■■■□□ 17.7
SMNDC1O75940 SPAG9-204ENST00000505173 2369 ntTSL 56.31□□□□□ -1.49e-13■■■□□ 17.7
SMNDC1O75940 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.03■□□□□ -09e-31■■■□□ 17.7
SMNDC1O75940 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC14.14□□□□□ -0.159e-31■■■□□ 17.7
SMNDC1O75940 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC13.98□□□□□ -0.179e-31■■■□□ 17.7
SMNDC1O75940 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.189e-31■■■□□ 17.7
SMNDC1O75940 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC13.27□□□□□ -0.289e-31■■■□□ 17.7
SMNDC1O75940 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC11.96□□□□□ -0.59e-31■■■□□ 17.7
SMNDC1O75940 NEU4-210ENST00000428592 505 ntTSL 415.76■□□□□ 0.114e-6■■■□□ 17.7
SMNDC1O75940 ARFRP1-201ENST00000424545 384 ntTSL 26.05□□□□□ -1.445e-7■■■□□ 17.7
SMNDC1O75940 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16■□□□□ 0.152e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.073e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.653e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.243e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-218ENST00000568288 501 ntTSL 515.59■□□□□ 0.093e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.123e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.163e-6■■■□□ 17.7
SMNDC1O75940 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.363e-6■■■□□ 17.7
SMNDC1O75940 SUPT5H-203ENST00000402194 3698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.419e-8■■■□□ 17.7
SMNDC1O75940 SUPT5H-201ENST00000359191 3770 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.439e-8■■■□□ 17.7
SMNDC1O75940 SUPT5H-213ENST00000598725 3742 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.549e-8■■■□□ 17.7
SMNDC1O75940 SUPT5H-215ENST00000599117 3902 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.69e-8■■■□□ 17.7
SMNDC1O75940 SUPT5H-204ENST00000432763 3710 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.699e-8■■■□□ 17.7
SMNDC1O75940 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.71■□□□□ 0.274e-6■■■□□ 17.7
SMNDC1O75940 SNORD14E-201ENST00000364009 85 ntBASIC3.04□□□□□ -1.922e-74■■■□□ 17.7
SMNDC1O75940 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.11e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-204ENST00000451422 2485 ntTSL 27.68□□□□□ -1.181e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-211ENST00000492895 539 ntTSL 45.58□□□□□ -1.521e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-212ENST00000497037 3509 ntTSL 24.59□□□□□ -1.671e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-202ENST00000412318 4408 ntTSL 24.42□□□□□ -1.71e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.17□□□□□ -1.741e-6■■■□□ 17.6
SMNDC1O75940 ANKRD28-213ENST00000498524 4289 ntTSL 24.01□□□□□ -1.771e-6■■■□□ 17.6
SMNDC1O75940 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.495e-7■■■□□ 17.6
SMNDC1O75940 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.475e-7■■■□□ 17.6
SMNDC1O75940 CLK2-205ENST00000476983 1885 ntTSL 1 (best)17.94■□□□□ 0.465e-7■■■□□ 17.6
SMNDC1O75940 SLC16A3-210ENST00000580189 872 ntTSL 517.18■□□□□ 0.343e-6■■■□□ 17.6
SMNDC1O75940 SPATA20-207ENST00000504271 806 ntTSL 216.47■□□□□ 0.231e-13■■■□□ 17.6
SMNDC1O75940 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.135e-7■■■□□ 17.6
SMNDC1O75940 SLC16A3-204ENST00000578522 535 ntTSL 414.87□□□□□ -0.033e-6■■■□□ 17.6
SMNDC1O75940 GLYR1-208ENST00000588297 580 ntTSL 314.86□□□□□ -0.035e-6■■■□□ 17.6
SMNDC1O75940 GLYR1-201ENST00000321919 3772 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.325e-6■■■□□ 17.6
SMNDC1O75940 GLYR1-212ENST00000591451 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.345e-6■■■□□ 17.6
SMNDC1O75940 GLYR1-202ENST00000436648 3466 ntTSL 2 BASIC12.5□□□□□ -0.415e-6■■■□□ 17.6
SMNDC1O75940 GLYR1-210ENST00000589389 3606 ntTSL 1 (best)12.2□□□□□ -0.465e-6■■■□□ 17.6
SMNDC1O75940 SPATA20-214ENST00000508528 512 ntTSL 511.15□□□□□ -0.621e-13■■■□□ 17.6
SMNDC1O75940 GLYR1-209ENST00000588732 3527 ntTSL 1 (best)10.09□□□□□ -0.795e-6■■■□□ 17.6
SMNDC1O75940 CLK2-204ENST00000471047 701 ntTSL 38.82□□□□□ -15e-7■■■□□ 17.6
SMNDC1O75940 SREBF1-207ENST00000447641 644 ntTSL 312.53□□□□□ -0.44e-6■■■□□ 17.6
SMNDC1O75940 ARFRP1-209ENST00000612772 1375 ntTSL 315.21■□□□□ 0.028e-7■■■□□ 17.6
SMNDC1O75940 SLC6A8-202ENST00000413787 468 ntTSL 516.13■□□□□ 0.175e-13■■■□□ 17.6
SMNDC1O75940 SLC6A8-206ENST00000457723 266 ntTSL 511.16□□□□□ -0.625e-13■■■□□ 17.6
SMNDC1O75940 SLC6A8-205ENST00000442457 523 ntTSL 310.98□□□□□ -0.655e-13■■■□□ 17.6
SMNDC1O75940 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.132e-6■■■□□ 17.6
SMNDC1O75940 DDB1-217ENST00000540166 3906 ntTSL 29.35□□□□□ -0.912e-6■■■□□ 17.6
SMNDC1O75940 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC27.07■■□□□ 1.921e-8■■■□□ 17.6
SMNDC1O75940 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.24■□□□□ 0.991e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-212ENST00000533764 853 ntTSL 219.48■□□□□ 0.711e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.22■□□□□ 0.671e-8■■■□□ 17.6
SMNDC1O75940 RPLP1-204ENST00000488122 940 ntTSL 218.72■□□□□ 0.591e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.61■□□□□ 0.411e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-205ENST00000524623 592 ntTSL 1 (best)16.49■□□□□ 0.231e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.24■□□□□ 0.191e-8■■■□□ 17.6
SMNDC1O75940 CYHR1-210ENST00000530637 581 ntTSL 315.63■□□□□ 0.091e-8■■■□□ 17.6
SMNDC1O75940 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.16□□□□□ -0.31e-8■■■□□ 17.6
SMNDC1O75940 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC11.77□□□□□ -0.531e-8■■■□□ 17.6
SMNDC1O75940 RPLP1-203ENST00000487304 1962 ntTSL 511.45□□□□□ -0.581e-8■■■□□ 17.6
SMNDC1O75940 TPI1-202ENST00000396705 1231 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.71e-8■■■□□ 17.6
SMNDC1O75940 TPI1-208ENST00000495834 820 ntTSL 210.33□□□□□ -0.761e-8■■■□□ 17.6
SMNDC1O75940 TPI1-209ENST00000535434 1587 ntTSL 2 BASIC10.09□□□□□ -0.791e-8■■■□□ 17.6
SMNDC1O75940 TPI1-203ENST00000462761 374 ntTSL 39.68□□□□□ -0.861e-8■■■□□ 17.6
SMNDC1O75940 TPI1-207ENST00000493987 839 ntTSL 39.65□□□□□ -0.861e-8■■■□□ 17.6
SMNDC1O75940 RPLP1-201ENST00000260379 1197 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.961e-8■■■□□ 17.6
SMNDC1O75940 RPLP1-205ENST00000560274 256 ntTSL 3 BASIC7.31□□□□□ -1.241e-8■■■□□ 17.6
SMNDC1O75940 SRSF11-214ENST00000484162 4008 ntTSL 1 (best)7□□□□□ -1.292e-37■■■□□ 17.6
SMNDC1O75940 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.4□□□□□ -1.552e-37■■■□□ 17.6
SMNDC1O75940 SDF4-207ENST00000494748 3516 ntTSL 216.57■□□□□ 0.242e-6■■■□□ 17.5
SMNDC1O75940 DOT1L-204ENST00000457590 2907 ntTSL 516.96■□□□□ 0.313e-6■■■□□ 17.5
SMNDC1O75940 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.183e-6■■■□□ 17.5
SMNDC1O75940 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.14e-6■■■□□ 17.5
SMNDC1O75940 LRP8-209ENST00000480045 3231 ntTSL 521.84■■□□□ 1.094e-6■■■□□ 17.5
SMNDC1O75940 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.854e-6■■■□□ 17.5
SMNDC1O75940 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.42■□□□□ 0.384e-6■■■□□ 17.5
SMNDC1O75940 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.16■□□□□ 0.344e-6■■■□□ 17.5
SMNDC1O75940 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 04e-6■■■□□ 17.5
SMNDC1O75940 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.94□□□□□ -0.024e-6■■■□□ 17.5
SMNDC1O75940 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.012e-8■■■□□ 17.5
SMNDC1O75940 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.112e-8■■■□□ 17.5
SMNDC1O75940 CPSF1-205ENST00000531042 580 ntTSL 514.23□□□□□ -0.132e-8■■■□□ 17.5
SMNDC1O75940 GORASP2-211ENST00000497928 711 ntTSL 518.75■□□□□ 0.594e-9■■■□□ 17.4
SMNDC1O75940 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.542e-6■■■□□ 17.4
SMNDC1O75940 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.34■□□□□ 0.532e-6■■■□□ 17.4
SMNDC1O75940 GORASP2-205ENST00000455067 530 ntTSL 416.03■□□□□ 0.164e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-204ENST00000454751 624 ntTSL 515.66■□□□□ 0.14e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.044e-9■■■□□ 17.4
SMNDC1O75940 GORASP2-203ENST00000444801 568 ntTSL 315.05■□□□□ -04e-9■■■□□ 17.4
Retrieved 100 of 11,362 protein–RNA pairs in 72.4 ms