RNA–Protein interactions for RNA: ENST00000447641.5

SREBF1-207, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 644 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-207ENST00000447641 NISCHQ9Y2I1 1504 aa34.22■■■■□ 3.07
SREBF1-207ENST00000447641 ABCC9O60706 1549 aa31■■■□□ 2.55
SREBF1-207ENST00000447641 CCDC180Q9P1Z9 1646 aa30.78■■■□□ 2.52
SREBF1-207ENST00000447641 DNAJC5BQ9UF47 199 aa29.4■■■□□ 2.3
SREBF1-207ENST00000447641 RB1CC1Q8TDY2 1594 aa29.36■■■□□ 2.29
SREBF1-207ENST00000447641 NACADO15069 1562 aa29.07■■■□□ 2.24
SREBF1-207ENST00000447641 UNC13AQ9UPW8 1703 aa28.94■■■□□ 2.22
SREBF1-207ENST00000447641 PABPN1Q86U42 306 aaKnown RBP eCLIP28.71■■■□□ 2.19
SREBF1-207ENST00000447641 BICRAQ9NZM4 1560 aa28.67■■■□□ 2.18
SREBF1-207ENST00000447641 MYO15BQ96JP2 1530 aa28.58■■■□□ 2.17
SREBF1-207ENST00000447641 DCAF8L2P0C7V8 631 aa28.57■■■□□ 2.16
SREBF1-207ENST00000447641 ZCCHC6Q5VYS8 1495 aaKnown RBP28.52■■■□□ 2.16
SREBF1-207ENST00000447641 DCAF1Q9Y4B6 1507 aa28.36■■■□□ 2.13
SREBF1-207ENST00000447641 SHROOM4Q9ULL8 1493 aa28.11■■■□□ 2.09
SREBF1-207ENST00000447641 CC2D2AQ9P2K1 1620 aa28.06■■■□□ 2.08
SREBF1-207ENST00000447641 SCRIBQ14160 1630 aa28■■■□□ 2.07
SREBF1-207ENST00000447641 CECR2Q9BXF3 1484 aa27.94■■■□□ 2.06
SREBF1-207ENST00000447641 EIF4G1Q04637 1599 aaKnown RBP27.91■■■□□ 2.06
SREBF1-207ENST00000447641 DNAJC5Q9H3Z4 198 aa27.13■■□□□ 1.93
SREBF1-207ENST00000447641 CUX2O14529 1486 aa26.85■■□□□ 1.89
SREBF1-207ENST00000447641 NCAPD3P42695 1498 aa26.81■■□□□ 1.88
SREBF1-207ENST00000447641 ATAD2BQ9ULI0 1458 aa26.72■■□□□ 1.87
SREBF1-207ENST00000447641 ERCC6Q03468 1493 aa26.71■■□□□ 1.87
SREBF1-207ENST00000447641 SMARCA4P51532 1647 aa26.68■■□□□ 1.86
SREBF1-207ENST00000447641 HMGXB3Q12766 1538 aa26.67■■□□□ 1.86
SREBF1-207ENST00000447641 SMARCA2P51531 1590 aa26.6■■□□□ 1.85
SREBF1-207ENST00000447641 NESP48681 1621 aa26.6■■□□□ 1.85
SREBF1-207ENST00000447641 THOC2Q8NI27 1593 aaKnown RBP26.49■■□□□ 1.83
SREBF1-207ENST00000447641 BAZ1AQ9NRL2 1556 aaPredicted RBP26.49■■□□□ 1.83
SREBF1-207ENST00000447641 PEG3Q9GZU2 1588 aa26.43■■□□□ 1.82
SREBF1-207ENST00000447641 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
SREBF1-207ENST00000447641 MROH2BQ7Z745 1585 aa26.37■■□□□ 1.81
SREBF1-207ENST00000447641 KIF21AQ7Z4S6 1674 aa26.34■■□□□ 1.81
SREBF1-207ENST00000447641 LAMC3Q9Y6N6 1575 aa26.33■■□□□ 1.8
SREBF1-207ENST00000447641 RSF1Q96T23 1441 aaPredicted RBP26.13■■□□□ 1.77
SREBF1-207ENST00000447641 WIZO95785 1651 aa26.07■■□□□ 1.76
SREBF1-207ENST00000447641 PDS5BQ9NTI5 1447 aa26.05■■□□□ 1.76
SREBF1-207ENST00000447641 WDR62O43379 1518 aa25.96■■□□□ 1.75
SREBF1-207ENST00000447641 MRC2Q9UBG0 1479 aa25.94■■□□□ 1.74
SREBF1-207ENST00000447641 CADPSQ9ULU8 1353 aa25.94■■□□□ 1.74
SREBF1-207ENST00000447641 TOP2AP11388 1531 aaKnown RBP25.8■■□□□ 1.72
SREBF1-207ENST00000447641 CEP164Q9UPV0 1460 aa25.75■■□□□ 1.71
SREBF1-207ENST00000447641 TRIM41Q8WV44 630 aa25.75■■□□□ 1.71
SREBF1-207ENST00000447641 FANCD2Q9BXW9 1451 aa25.7■■□□□ 1.7
SREBF1-207ENST00000447641 CFTRP13569 1480 aa25.64■■□□□ 1.69
SREBF1-207ENST00000447641 URB2Q14146 1524 aaKnown RBP25.59■■□□□ 1.69
SREBF1-207ENST00000447641 PRDM2Q13029 1718 aa25.54■■□□□ 1.68
SREBF1-207ENST00000447641 CCDC88BA6NC98 1476 aa25.52■■□□□ 1.68
SREBF1-207ENST00000447641 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.66
SREBF1-207ENST00000447641 RIMBP3CA6NJZ7 1639 aa25.38■■□□□ 1.65
SREBF1-207ENST00000447641 RIMBP3BA6NNM3 1639 aa25.38■■□□□ 1.65
SREBF1-207ENST00000447641 RIMBP3Q9UFD9 1639 aa25.38■■□□□ 1.65
SREBF1-207ENST00000447641 OSCARQ8IYS5 282 aa25.38■■□□□ 1.65
SREBF1-207ENST00000447641 ZNF608Q9ULD9 1512 aaPredicted RBP25.32■■□□□ 1.64
SREBF1-207ENST00000447641 IFT140Q96RY7 1462 aa25.24■■□□□ 1.63
SREBF1-207ENST00000447641 EIF4G3O43432 1585 aaKnown RBP25.22■■□□□ 1.63
SREBF1-207ENST00000447641 TOPBP1Q92547 1522 aa25.22■■□□□ 1.63
SREBF1-207ENST00000447641 ARHGEF11O15085 1522 aa25.21■■□□□ 1.63
SREBF1-207ENST00000447641 CHD1O14646 1710 aa25.13■■□□□ 1.61
SREBF1-207ENST00000447641 DNMBPQ6XZF7 1577 aa25.11■■□□□ 1.61
SREBF1-207ENST00000447641 TARBP1Q13395 1621 aaKnown RBP25.1■■□□□ 1.61
SREBF1-207ENST00000447641 ABCC8Q09428 1581 aa25.01■■□□□ 1.59
SREBF1-207ENST00000447641 AQRO60306 1485 aaKnown RBP eCLIP24.97■■□□□ 1.593e-9■■■■□ 22.6
SREBF1-207ENST00000447641 ARAP1Q96P48 1450 aa24.96■■□□□ 1.59
SREBF1-207ENST00000447641 POLA1P09884 1462 aaPredicted RBP24.94■■□□□ 1.58
SREBF1-207ENST00000447641 CYB5RLQ6IPT4 315 aa24.84■■□□□ 1.57
SREBF1-207ENST00000447641 RAD54L2Q9Y4B4 1467 aa24.83■■□□□ 1.57
SREBF1-207ENST00000447641 CLASP1Q7Z460 1538 aa24.8■■□□□ 1.56
SREBF1-207ENST00000447641 SNAPC4Q5SXM2 1469 aa24.76■■□□□ 1.55
SREBF1-207ENST00000447641 WDR97A6NE52 1622 aa24.75■■□□□ 1.55
SREBF1-207ENST00000447641 CUX1P39880 1505 aa24.73■■□□□ 1.55
SREBF1-207ENST00000447641 FGD5Q6ZNL6 1462 aa24.72■■□□□ 1.55
SREBF1-207ENST00000447641 TDRD9Q8NDG6 1382 aaKnown RBP24.72■■□□□ 1.55
SREBF1-207ENST00000447641 SOGA1O94964 1423 aa24.7■■□□□ 1.55
SREBF1-207ENST00000447641 FBLN2P98095 1184 aa24.7■■□□□ 1.54
SREBF1-207ENST00000447641 SYNJ1O43426 1573 aa24.65■■□□□ 1.54
SREBF1-207ENST00000447641 MAGI1Q96QZ7 1491 aaPredicted RBP24.64■■□□□ 1.53
SREBF1-207ENST00000447641 PBRM1Q86U86 1689 aa24.63■■□□□ 1.53
SREBF1-207ENST00000447641 TRHP20396 242 aaPredicted RBP24.62■■□□□ 1.53
SREBF1-207ENST00000447641 WRNQ14191 1432 aaPredicted RBP eCLIP24.59■■□□□ 1.53
SREBF1-207ENST00000447641 GRIN2BQ13224 1484 aa24.57■■□□□ 1.52
SREBF1-207ENST00000447641 SYNJ2O15056 1496 aa24.55■■□□□ 1.52
SREBF1-207ENST00000447641 TOP2BQ02880 1626 aa24.54■■□□□ 1.52
SREBF1-207ENST00000447641 BIVM-ERCC5R4GMW8 1640 aa24.54■■□□□ 1.52
SREBF1-207ENST00000447641 ABCA5Q8WWZ7 1642 aa24.52■■□□□ 1.52
SREBF1-207ENST00000447641 CHMP7Q8WUX9 453 aaPredicted RBP24.47■■□□□ 1.51
SREBF1-207ENST00000447641 GAPVD1Q14C86 1478 aa24.44■■□□□ 1.5
SREBF1-207ENST00000447641 ABCA10Q8WWZ4 1543 aa24.42■■□□□ 1.5
SREBF1-207ENST00000447641 ERCC6L2Q5T890 1561 aa24.42■■□□□ 1.5
SREBF1-207ENST00000447641 ADAMTS12P58397 1594 aa24.34■■□□□ 1.49
SREBF1-207ENST00000447641 CEP170Q5SW79 1584 aa24.33■■□□□ 1.48
SREBF1-207ENST00000447641 GRIN2AQ12879 1464 aa24.3■■□□□ 1.48
SREBF1-207ENST00000447641 SHROOM2Q13796 1616 aa24.28■■□□□ 1.48
SREBF1-207ENST00000447641 NUP160Q12769 1436 aa24.25■■□□□ 1.47
SREBF1-207ENST00000447641 KIF13AQ9H1H9 1805 aa24.2■■□□□ 1.46
SREBF1-207ENST00000447641 FHAD1B1AJZ9 1412 aa24.1■■□□□ 1.45
SREBF1-207ENST00000447641 ERICH3Q5RHP9 1530 aa24.1■■□□□ 1.45
SREBF1-207ENST00000447641 AEBP2Q6ZN18 517 aaPredicted RBP24.1■■□□□ 1.45
SREBF1-207ENST00000447641 KIF27Q86VH2 1401 aa24.06■■□□□ 1.44
SREBF1-207ENST00000447641 RUSC2Q8N2Y8 1516 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms