RNA–Protein interactions for RNA: ENST00000361168.9

CLK2-202, Transcript of CDC like kinase 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLK2, Length 1,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK2-202ENST00000361168 NISCHQ9Y2I1 1504 aa42.61■■■■■ 4.41
CLK2-202ENST00000361168 CCDC180Q9P1Z9 1646 aa37.49■■■■□ 3.59
CLK2-202ENST00000361168 ABCC9O60706 1549 aa36.5■■■■□ 3.43
CLK2-202ENST00000361168 DCAF8L2P0C7V8 631 aa35.61■■■■□ 3.29
CLK2-202ENST00000361168 ZCCHC6Q5VYS8 1495 aaKnown RBP35.59■■■■□ 3.29
CLK2-202ENST00000361168 NACADO15069 1562 aa35.18■■■■□ 3.22
CLK2-202ENST00000361168 DCAF1Q9Y4B6 1507 aa35.14■■■■□ 3.22
CLK2-202ENST00000361168 RB1CC1Q8TDY2 1594 aa35.11■■■■□ 3.21
CLK2-202ENST00000361168 MYO15BQ96JP2 1530 aa35.08■■■■□ 3.21
CLK2-202ENST00000361168 SCRIBQ14160 1630 aa34.48■■■■□ 3.11
CLK2-202ENST00000361168 UNC13AQ9UPW8 1703 aa34.42■■■■□ 3.1
CLK2-202ENST00000361168 PABPN1Q86U42 306 aaKnown RBP eCLIP34.3■■■■□ 3.082e-6■□□□□ 11.1
CLK2-202ENST00000361168 SHROOM4Q9ULL8 1493 aa34.21■■■■□ 3.07
CLK2-202ENST00000361168 BICRAQ9NZM4 1560 aa34.18■■■■□ 3.06
CLK2-202ENST00000361168 CECR2Q9BXF3 1484 aa33.28■■■□□ 2.92
CLK2-202ENST00000361168 DNAJC5BQ9UF47 199 aa33.2■■■□□ 2.91
CLK2-202ENST00000361168 EIF4G1Q04637 1599 aaKnown RBP33.2■■■□□ 2.91
CLK2-202ENST00000361168 CC2D2AQ9P2K1 1620 aa32.95■■■□□ 2.87
CLK2-202ENST00000361168 MROH2BQ7Z745 1585 aa32.94■■■□□ 2.86
CLK2-202ENST00000361168 SMARCA4P51532 1647 aa32.94■■■□□ 2.86
CLK2-202ENST00000361168 BAZ1AQ9NRL2 1556 aaPredicted RBP32.93■■■□□ 2.86
CLK2-202ENST00000361168 RSF1Q96T23 1441 aaPredicted RBP32.73■■■□□ 2.83
CLK2-202ENST00000361168 ATAD2BQ9ULI0 1458 aa32.67■■■□□ 2.82
CLK2-202ENST00000361168 WIZO95785 1651 aa32.59■■■□□ 2.81
CLK2-202ENST00000361168 PEG3Q9GZU2 1588 aa32.55■■■□□ 2.8
CLK2-202ENST00000361168 SMARCA2P51531 1590 aa32.55■■■□□ 2.8
CLK2-202ENST00000361168 NCAPD3P42695 1498 aa32.53■■■□□ 2.8
CLK2-202ENST00000361168 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
CLK2-202ENST00000361168 BAZ1BQ9UIG0 1483 aaKnown RBP32.41■■■□□ 2.78
CLK2-202ENST00000361168 HMGXB3Q12766 1538 aa32.36■■■□□ 2.77
CLK2-202ENST00000361168 TOP2AP11388 1531 aaKnown RBP32.17■■■□□ 2.74
CLK2-202ENST00000361168 CCDC88BA6NC98 1476 aa31.89■■■□□ 2.7
CLK2-202ENST00000361168 NESP48681 1621 aa31.77■■■□□ 2.68
CLK2-202ENST00000361168 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
CLK2-202ENST00000361168 CFTRP13569 1480 aa31.56■■■□□ 2.64
CLK2-202ENST00000361168 LAMC3Q9Y6N6 1575 aa31.54■■■□□ 2.64
CLK2-202ENST00000361168 PDS5BQ9NTI5 1447 aa31.34■■■□□ 2.61
CLK2-202ENST00000361168 ERCC6Q03468 1493 aa31.32■■■□□ 2.6
CLK2-202ENST00000361168 FANCD2Q9BXW9 1451 aa31.3■■■□□ 2.6
CLK2-202ENST00000361168 KIF21AQ7Z4S6 1674 aa31.29■■■□□ 2.6
CLK2-202ENST00000361168 PRDM2Q13029 1718 aa31.2■■■□□ 2.59
CLK2-202ENST00000361168 CEP164Q9UPV0 1460 aa31.17■■■□□ 2.58
CLK2-202ENST00000361168 THOC2Q8NI27 1593 aaKnown RBP31.03■■■□□ 2.56
CLK2-202ENST00000361168 MRC2Q9UBG0 1479 aa31.01■■■□□ 2.55
CLK2-202ENST00000361168 URB2Q14146 1524 aaKnown RBP30.99■■■□□ 2.55
CLK2-202ENST00000361168 ABCC8Q09428 1581 aa30.95■■■□□ 2.54
CLK2-202ENST00000361168 WDR62O43379 1518 aa30.89■■■□□ 2.54
CLK2-202ENST00000361168 TOPBP1Q92547 1522 aa30.84■■■□□ 2.53
CLK2-202ENST00000361168 CUX1P39880 1505 aa30.84■■■□□ 2.53
CLK2-202ENST00000361168 WRNQ14191 1432 aaPredicted RBP eCLIP30.79■■■□□ 2.52
CLK2-202ENST00000361168 DNMBPQ6XZF7 1577 aa30.79■■■□□ 2.52
CLK2-202ENST00000361168 SYNJ1O43426 1573 aa30.74■■■□□ 2.51
CLK2-202ENST00000361168 CUX2O14529 1486 aa30.7■■■□□ 2.51
CLK2-202ENST00000361168 POLA1P09884 1462 aaPredicted RBP30.65■■■□□ 2.5
CLK2-202ENST00000361168 FGD5Q6ZNL6 1462 aa30.64■■■□□ 2.5
CLK2-202ENST00000361168 TOP2BQ02880 1626 aa30.62■■■□□ 2.49
CLK2-202ENST00000361168 RAD54L2Q9Y4B4 1467 aa30.58■■■□□ 2.49
CLK2-202ENST00000361168 BIVM-ERCC5R4GMW8 1640 aa30.58■■■□□ 2.49
CLK2-202ENST00000361168 SOGA1O94964 1423 aa30.52■■■□□ 2.48
CLK2-202ENST00000361168 CHIC1Q5VXU3 224 aa30.48■■■□□ 2.47
CLK2-202ENST00000361168 TRIM41Q8WV44 630 aa30.47■■■□□ 2.47
CLK2-202ENST00000361168 TARBP1Q13395 1621 aaKnown RBP30.47■■■□□ 2.47
CLK2-202ENST00000361168 IFT140Q96RY7 1462 aa30.46■■■□□ 2.47
CLK2-202ENST00000361168 ZNF608Q9ULD9 1512 aaPredicted RBP30.46■■■□□ 2.47
CLK2-202ENST00000361168 TDRD9Q8NDG6 1382 aaKnown RBP30.38■■■□□ 2.45
CLK2-202ENST00000361168 AQRO60306 1485 aaKnown RBP eCLIP30.35■■■□□ 2.455e-7■■■■■ 28
CLK2-202ENST00000361168 ABCA10Q8WWZ4 1543 aa30.31■■■□□ 2.44
CLK2-202ENST00000361168 WDR97A6NE52 1622 aa30.28■■■□□ 2.44
CLK2-202ENST00000361168 EIF4G3O43432 1585 aaKnown RBP30.25■■■□□ 2.43
CLK2-202ENST00000361168 RUSC2Q8N2Y8 1516 aa30.16■■■□□ 2.42
CLK2-202ENST00000361168 GAPVD1Q14C86 1478 aa30.16■■■□□ 2.42
CLK2-202ENST00000361168 ABCA5Q8WWZ7 1642 aa30.14■■■□□ 2.41
CLK2-202ENST00000361168 KIF27Q86VH2 1401 aa30.07■■■□□ 2.4
CLK2-202ENST00000361168 GRIN2BQ13224 1484 aa30.05■■■□□ 2.4
CLK2-202ENST00000361168 SNAPC4Q5SXM2 1469 aa30.01■■■□□ 2.39
CLK2-202ENST00000361168 PBRM1Q86U86 1689 aa30■■■□□ 2.39
CLK2-202ENST00000361168 FAM9AQ8IZU1 332 aaPredicted RBP29.98■■■□□ 2.39
CLK2-202ENST00000361168 IGF1RP08069 1367 aa29.98■■■□□ 2.39
CLK2-202ENST00000361168 ERICH3Q5RHP9 1530 aa29.91■■■□□ 2.38
CLK2-202ENST00000361168 FBLN2P98095 1184 aa29.91■■■□□ 2.38
CLK2-202ENST00000361168 MAGI1Q96QZ7 1491 aaPredicted RBP29.87■■■□□ 2.37
CLK2-202ENST00000361168 CHMP7Q8WUX9 453 aaPredicted RBP29.82■■■□□ 2.36
CLK2-202ENST00000361168 ADAMTS12P58397 1594 aa29.81■■■□□ 2.36
CLK2-202ENST00000361168 SYNJ2O15056 1496 aa29.79■■■□□ 2.36
CLK2-202ENST00000361168 FHAD1B1AJZ9 1412 aa29.79■■■□□ 2.36
CLK2-202ENST00000361168 CSRNP3Q8WYN3 585 aa29.79■■■□□ 2.36
CLK2-202ENST00000361168 CARMIL1Q5VZK9 1371 aa29.77■■■□□ 2.36
CLK2-202ENST00000361168 CHD1O14646 1710 aa29.76■■■□□ 2.35
CLK2-202ENST00000361168 EEA1Q15075 1411 aa29.72■■■□□ 2.35
CLK2-202ENST00000361168 GRIN2AQ12879 1464 aa29.69■■■□□ 2.34
CLK2-202ENST00000361168 CUL7Q14999 1698 aa29.69■■■□□ 2.34
CLK2-202ENST00000361168 EHMT2Q96KQ7 1210 aa29.67■■■□□ 2.34
CLK2-202ENST00000361168 PRXQ9BXM0 1461 aa29.66■■■□□ 2.34
CLK2-202ENST00000361168 OSCARQ8IYS5 282 aa29.65■■■□□ 2.34
CLK2-202ENST00000361168 RAPGEF2Q9Y4G8 1499 aa29.61■■■□□ 2.33
CLK2-202ENST00000361168 CEP170Q5SW79 1584 aa29.56■■■□□ 2.32
CLK2-202ENST00000361168 NUP160Q12769 1436 aa29.52■■■□□ 2.32
CLK2-202ENST00000361168 CLASP1Q7Z460 1538 aa29.43■■■□□ 2.3
CLK2-202ENST00000361168 KIF21BO75037 1637 aa29.43■■■□□ 2.3
CLK2-202ENST00000361168 LOC105371045A0A1W2PR82 267 aa29.36■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms