RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 NISCHQ9Y2I1 1504 aa30.72■■■□□ 2.51
SDF4-207ENST00000494748 SHROOM4Q9ULL8 1493 aa26.45■■□□□ 1.82
SDF4-207ENST00000494748 ZCCHC6Q5VYS8 1495 aaKnown RBP26.13■■□□□ 1.77
SDF4-207ENST00000494748 SUPT5HO00267 1087 aaKnown RBP26.11■■□□□ 1.77
SDF4-207ENST00000494748 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
SDF4-207ENST00000494748 CCDC180Q9P1Z9 1646 aa25.93■■□□□ 1.74
SDF4-207ENST00000494748 HRCP23327 699 aa25.92■■□□□ 1.74
SDF4-207ENST00000494748 CHIC1Q5VXU3 224 aa25.78■■□□□ 1.72
SDF4-207ENST00000494748 PCGF6Q9BYE7 350 aa25.45■■□□□ 1.66
SDF4-207ENST00000494748 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
SDF4-207ENST00000494748 PPARGC1BQ86YN6 1023 aaKnown RBP25.33■■□□□ 1.65
SDF4-207ENST00000494748 LOC105371045A0A1W2PR82 267 aa25.03■■□□□ 1.6
SDF4-207ENST00000494748 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
SDF4-207ENST00000494748 TRIM26Q12899 539 aaPredicted RBP24.84■■□□□ 1.57
SDF4-207ENST00000494748 ABCC9O60706 1549 aa24.81■■□□□ 1.56
SDF4-207ENST00000494748 RSF1Q96T23 1441 aaPredicted RBP24.5■■□□□ 1.51
SDF4-207ENST00000494748 ZEB1P37275 1124 aaPredicted RBP24.45■■□□□ 1.51
SDF4-207ENST00000494748 RB1CC1Q8TDY2 1594 aa24.43■■□□□ 1.5
SDF4-207ENST00000494748 SCRIBQ14160 1630 aa24.35■■□□□ 1.49
SDF4-207ENST00000494748 SCAF1Q9H7N4 1312 aaKnown RBP24.29■■□□□ 1.48
SDF4-207ENST00000494748 TRIM41Q8WV44 630 aa24.25■■□□□ 1.47
SDF4-207ENST00000494748 PELP1Q8IZL8 1130 aaKnown RBP24.24■■□□□ 1.47
SDF4-207ENST00000494748 FAM9AQ8IZU1 332 aaPredicted RBP24.09■■□□□ 1.45
SDF4-207ENST00000494748 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
SDF4-207ENST00000494748 CECR2Q9BXF3 1484 aa23.95■■□□□ 1.42
SDF4-207ENST00000494748 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
SDF4-207ENST00000494748 WIZO95785 1651 aa23.9■■□□□ 1.42
SDF4-207ENST00000494748 EHMT2Q96KQ7 1210 aa23.85■■□□□ 1.41
SDF4-207ENST00000494748 ACIN1Q9UKV3 1341 aaKnown RBP23.78■■□□□ 1.4
SDF4-207ENST00000494748 BAZ1AQ9NRL2 1556 aaPredicted RBP23.78■■□□□ 1.4
SDF4-207ENST00000494748 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.76■■□□□ 1.39
SDF4-207ENST00000494748 NEUROD1Q13562 356 aa23.74■■□□□ 1.39
SDF4-207ENST00000494748 NACADO15069 1562 aa23.73■■□□□ 1.39
SDF4-207ENST00000494748 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.383e-6■■■■□ 26.3
SDF4-207ENST00000494748 CCER1Q8TC90 406 aaPredicted RBP23.63■■□□□ 1.37
SDF4-207ENST00000494748 DIEXFQ68CQ4 756 aaKnown RBP23.54■■□□□ 1.36
SDF4-207ENST00000494748 ABCC8Q09428 1581 aa23.52■■□□□ 1.36
SDF4-207ENST00000494748 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
SDF4-207ENST00000494748 GTF3C3Q9Y5Q9 886 aa23.49■■□□□ 1.35
SDF4-207ENST00000494748 CEP162Q5TB80 1403 aa23.46■■□□□ 1.35
SDF4-207ENST00000494748 TOP2AP11388 1531 aaKnown RBP23.45■■□□□ 1.35
SDF4-207ENST00000494748 SMARCA2P51531 1590 aa23.4■■□□□ 1.34
SDF4-207ENST00000494748 CENPBP07199 599 aaPredicted RBP23.38■■□□□ 1.33
SDF4-207ENST00000494748 TNIKQ9UKE5 1360 aa23.36■■□□□ 1.33
SDF4-207ENST00000494748 SOGA1O94964 1423 aa23.35■■□□□ 1.33
SDF4-207ENST00000494748 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
SDF4-207ENST00000494748 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
SDF4-207ENST00000494748 TTBK1Q5TCY1 1321 aaPredicted RBP23.24■■□□□ 1.31
SDF4-207ENST00000494748 ZNF316A6NFI3 1004 aaPredicted RBP23.23■■□□□ 1.31
SDF4-207ENST00000494748 EEA1Q15075 1411 aa23.21■■□□□ 1.31
SDF4-207ENST00000494748 UNC13AQ9UPW8 1703 aa23.2■■□□□ 1.3
SDF4-207ENST00000494748 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
SDF4-207ENST00000494748 MYT1Q01538 1121 aa23.12■■□□□ 1.29
SDF4-207ENST00000494748 CSRNP3Q8WYN3 585 aa23.11■■□□□ 1.29
SDF4-207ENST00000494748 KIF21BO75037 1637 aa23.04■■□□□ 1.28
SDF4-207ENST00000494748 MIER1Q8N108 512 aa23.03■■□□□ 1.28
SDF4-207ENST00000494748 UBTFP17480 764 aaKnown RBP22.98■■□□□ 1.27
SDF4-207ENST00000494748 YTHDC1Q96MU7 727 aaKnown RBP22.97■■□□□ 1.27
SDF4-207ENST00000494748 SYNJ1O43426 1573 aa22.96■■□□□ 1.27
SDF4-207ENST00000494748 CEP164Q9UPV0 1460 aa22.93■■□□□ 1.26
SDF4-207ENST00000494748 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
SDF4-207ENST00000494748 VPS8Q8N3P4 1428 aa22.87■■□□□ 1.25
SDF4-207ENST00000494748 CLIP1P30622 1438 aa22.87■■□□□ 1.25
SDF4-207ENST00000494748 HNRNPUL2Q1KMD3 747 aaKnown RBP22.85■■□□□ 1.25
SDF4-207ENST00000494748 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.24
SDF4-207ENST00000494748 RAPGEF2Q9Y4G8 1499 aa22.76■■□□□ 1.23
SDF4-207ENST00000494748 BICRAQ9NZM4 1560 aa22.75■■□□□ 1.23
SDF4-207ENST00000494748 DHX57Q6P158 1386 aaKnown RBP22.66■■□□□ 1.22
SDF4-207ENST00000494748 CLSPNQ9HAW4 1339 aa22.62■■□□□ 1.21
SDF4-207ENST00000494748 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
SDF4-207ENST00000494748 ARAP1Q96P48 1450 aa22.57■■□□□ 1.2
SDF4-207ENST00000494748 BIVM-ERCC5R4GMW8 1640 aa22.56■■□□□ 1.2
SDF4-207ENST00000494748 SUPT16HQ9Y5B9 1047 aaKnown RBP22.55■■□□□ 1.2
SDF4-207ENST00000494748 ERICH3Q5RHP9 1530 aa22.53■■□□□ 1.2
SDF4-207ENST00000494748 ATAD2BQ9ULI0 1458 aa22.51■■□□□ 1.19
SDF4-207ENST00000494748 CUX2O14529 1486 aa22.51■■□□□ 1.19
SDF4-207ENST00000494748 PRXQ9BXM0 1461 aa22.48■■□□□ 1.19
SDF4-207ENST00000494748 APLP2Q06481 763 aa22.48■■□□□ 1.19
SDF4-207ENST00000494748 RRBP1Q9P2E9 1410 aaKnown RBP22.48■■□□□ 1.19
SDF4-207ENST00000494748 KANK4Q5T7N3 995 aaPredicted RBP22.42■■□□□ 1.18
SDF4-207ENST00000494748 PABPN1Q86U42 306 aaKnown RBP eCLIP22.42■■□□□ 1.181e-10■■■■□ 21.1
SDF4-207ENST00000494748 RANGAP1P46060 587 aaPredicted RBP22.37■■□□□ 1.17
SDF4-207ENST00000494748 TSHZ2Q9NRE2 1034 aa22.36■■□□□ 1.17
SDF4-207ENST00000494748 MAPKBP1O60336 1514 aa22.32■■□□□ 1.16
SDF4-207ENST00000494748 CUX1P39880 1505 aa22.26■■□□□ 1.15
SDF4-207ENST00000494748 ARHGAP35Q9NRY4 1499 aa22.25■■□□□ 1.15
SDF4-207ENST00000494748 CCNB3Q8WWL7 1395 aa22.25■■□□□ 1.15
SDF4-207ENST00000494748 KCNH8Q96L42 1107 aa22.24■■□□□ 1.15
SDF4-207ENST00000494748 RAB3GAP2Q9H2M9 1393 aa22.15■■□□□ 1.14
SDF4-207ENST00000494748 ANP32EQ9BTT0 268 aa22.14■■□□□ 1.13
SDF4-207ENST00000494748 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
SDF4-207ENST00000494748 TIAM1Q13009 1591 aa22.13■■□□□ 1.13
SDF4-207ENST00000494748 KIF27Q86VH2 1401 aa22.11■■□□□ 1.13
SDF4-207ENST00000494748 MAP3K1Q13233 1512 aa22.11■■□□□ 1.13
SDF4-207ENST00000494748 HMGXB3Q12766 1538 aa22.05■■□□□ 1.12
SDF4-207ENST00000494748 PRDM2Q13029 1718 aa22.02■■□□□ 1.11
SDF4-207ENST00000494748 CFAP43Q8NDM7 1665 aa22.02■■□□□ 1.11
SDF4-207ENST00000494748 SETD5Q9C0A6 1442 aa22.01■■□□□ 1.11
SDF4-207ENST00000494748 PPP1R15AO75807 674 aaPredicted RBP21.99■■□□□ 1.11
SDF4-207ENST00000494748 LRRC9Q6ZRR7 1453 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms