Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 AL662899.3-202ENST00000617558 991 ntTSL 1 (best) BASIC13.85□□□□□ -0.196e-7■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.216e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-204ENST00000375885 1061 ntTSL 5 BASIC13.7□□□□□ -0.226e-7■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-206ENST00000536241 1490 ntTSL 513.49□□□□□ -0.252e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-204ENST00000417493 408 ntTSL 513.34□□□□□ -0.271e-9■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-208ENST00000540683 985 ntTSL 2 BASIC12.76□□□□□ -0.372e-7■■■■■ 42.5
DDX55Q8NHQ9 AL662899.3-201ENST00000375880 2487 ntAPPRIS P1 TSL 3 BASIC12.45□□□□□ -0.425e-10■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-201ENST00000229265 1047 ntTSL 2 BASIC12.36□□□□□ -0.432e-7■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-203ENST00000402580 2006 ntTSL 2 BASIC12.35□□□□□ -0.436e-7■■■■■ 42.5
DDX55Q8NHQ9 RNPEPL1-207ENST00000481757 3944 ntTSL 212.31□□□□□ -0.446e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-209ENST00000619550 4763 ntTSL 5 BASIC12.24□□□□□ -0.456e-7■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-206ENST00000428575 2148 ntTSL 2 BASIC11.96□□□□□ -0.496e-7■■■■■ 42.5
DDX55Q8NHQ9 HNF4A-201ENST00000316099 6445 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.56e-7■■■■■ 42.5
DDX55Q8NHQ9 CDCA3-204ENST00000535406 1327 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.562e-7■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-204ENST00000405506 1958 ntTSL 5 BASIC11.53□□□□□ -0.566e-7■■■■■ 42.5
DDX55Q8NHQ9 XRCC6-205ENST00000405878 2200 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.66e-7■■■■■ 42.5
DDX55Q8NHQ9 OGDH-201ENST00000222673 4181 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.666e-7■■■■■ 42.5
DDX55Q8NHQ9 HAT1-206ENST00000494601 3845 ntTSL 1 (best)10.5□□□□□ -0.736e-7■■■■■ 42.5
DDX55Q8NHQ9 SNRNP25-205ENST00000466183 1130 ntTSL 210.43□□□□□ -0.746e-7■■■■■ 42.5
DDX55Q8NHQ9 CSNK2B-202ENST00000375866 936 ntAPPRIS P1 TSL 5 BASIC9.87□□□□□ -0.836e-7■■■■■ 42.5
DDX55Q8NHQ9 HAT1-203ENST00000412731 1567 ntTSL 1 (best)9.67□□□□□ -0.866e-7■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.926e-7■■■■■ 42.5
DDX55Q8NHQ9 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC9.2□□□□□ -0.946e-7■■■■■ 42.5
DDX55Q8NHQ9 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC9.1□□□□□ -0.956e-7■■■■■ 42.5
DDX55Q8NHQ9 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.286e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-209ENST00000444517 1180 ntTSL 1 (best)5.43□□□□□ -1.546e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-208ENST00000442660 1566 ntTSL 1 (best)4.82□□□□□ -1.646e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-206ENST00000439593 528 ntTSL 34.8□□□□□ -1.646e-7■■■■■ 42.5
DDX55Q8NHQ9 DONSON-212ENST00000460557 786 ntTSL 24.67□□□□□ -1.666e-7■■■■■ 42.5
DDX55Q8NHQ9 MXD3-207ENST00000509339 579 ntTSL 329.61■■■□□ 2.334e-9■■■■■ 42.5
DDX55Q8NHQ9 GCC2-201ENST00000309863 7537 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.372e-9■■■■■ 42.2
DDX55Q8NHQ9 GCC2-211ENST00000482325 6772 ntTSL 1 (best)6.92□□□□□ -1.32e-9■■■■■ 42.2
DDX55Q8NHQ9 GCC2-209ENST00000480863 5867 ntTSL 26.52□□□□□ -1.372e-9■■■■■ 42.2
DDX55Q8NHQ9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.56■□□□□ 0.725e-10■■■■■ 41.8
DDX55Q8NHQ9 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.325e-10■■■■■ 41.8
DDX55Q8NHQ9 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.22■□□□□ 0.195e-10■■■■■ 41.8
DDX55Q8NHQ9 MT1X-204ENST00000568370 1727 nt19.23■□□□□ 0.672e-7■■■■■ 41.5
DDX55Q8NHQ9 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC15.86■□□□□ 0.132e-7■■■■■ 41.5
DDX55Q8NHQ9 MT1X-201ENST00000394485 450 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.532e-7■■■■■ 41.5
DDX55Q8NHQ9 MT1X-203ENST00000564974 549 ntTSL 1 (best)11.35□□□□□ -0.592e-7■■■■■ 41.5
DDX55Q8NHQ9 HGH1-205ENST00000533266 2106 ntTSL 224.17■■□□□ 1.468e-9■■■■■ 41.4
DDX55Q8NHQ9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.028e-9■■■■■ 41.4
DDX55Q8NHQ9 HGH1-206ENST00000534255 1791 ntTSL 1 (best)19.67■□□□□ 0.748e-9■■■■■ 41.4
DDX55Q8NHQ9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.639e-8■■■■■ 41.3
DDX55Q8NHQ9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.246e-9■■■■■ 41.3
DDX55Q8NHQ9 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.042e-9■■■■■ 41
DDX55Q8NHQ9 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.226e-8■■■■■ 40.4
DDX55Q8NHQ9 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.163e-12■■■■■ 40.4
DDX55Q8NHQ9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 12e-8■■■■■ 40.3
DDX55Q8NHQ9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.742e-8■■■■■ 40.3
DDX55Q8NHQ9 MYEOV-205ENST00000535653 2468 ntTSL 1 (best)18.06■□□□□ 0.482e-8■■■■■ 40.3
DDX55Q8NHQ9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.392e-8■■■■■ 40.3
DDX55Q8NHQ9 MYEOV-211ENST00000544008 599 ntTSL 215.73■□□□□ 0.112e-8■■■■■ 40.3
DDX55Q8NHQ9 ANAPC7-206ENST00000481473 1836 ntTSL 1 (best)14.63□□□□□ -0.077e-7■■■■■ 40.3
DDX55Q8NHQ9 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.267e-7■■■■■ 40.3
DDX55Q8NHQ9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.096e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-209ENST00000475170 2125 ntTSL 219.03■□□□□ 0.646e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.99■□□□□ 0.316e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-222ENST00000523323 2823 ntTSL 216.74■□□□□ 0.276e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.096e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.026e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.016e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-212ENST00000498666 4781 ntTSL 1 (best)14.74□□□□□ -0.056e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.146e-9■■■■■ 40.1
DDX55Q8NHQ9 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.156e-9■■■■■ 40.1
DDX55Q8NHQ9 TXNIP-203ENST00000488537 1509 ntTSL 58.54□□□□□ -1.046e-9■■■■■ 40.1
DDX55Q8NHQ9 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC7.02□□□□□ -1.296e-9■■■■■ 40.1
DDX55Q8NHQ9 TXNIP-202ENST00000486597 509 ntTSL 25.43□□□□□ -1.546e-9■■■■■ 40.1
DDX55Q8NHQ9 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.71■■□□□ 1.077e-31■■■■■ 39.2
DDX55Q8NHQ9 EMD-203ENST00000428228 946 ntTSL 321.41■■□□□ 1.027e-31■■■■■ 39.2
DDX55Q8NHQ9 EMD-208ENST00000492448 832 ntTSL 219.92■□□□□ 0.787e-31■■■■■ 39.2
DDX55Q8NHQ9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.573e-9■■■■■ 39
DDX55Q8NHQ9 CDK10-218ENST00000565470 724 ntTSL 322.63■■□□□ 1.212e-8■■■■■ 39
DDX55Q8NHQ9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC21.99■■□□□ 1.112e-8■■■■■ 39
DDX55Q8NHQ9 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.57■■□□□ 1.043e-9■■■■■ 39
DDX55Q8NHQ9 CCS-205ENST00000530384 1196 ntTSL 520.82■□□□□ 0.923e-9■■■■■ 39
DDX55Q8NHQ9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.852e-8■■■■■ 39
DDX55Q8NHQ9 CDK10-209ENST00000505733 1703 ntTSL 220.24■□□□□ 0.832e-8■■■■■ 39
DDX55Q8NHQ9 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.663e-12■■■■■ 39
DDX55Q8NHQ9 PHKA2-203ENST00000469485 1945 ntTSL 218.76■□□□□ 0.593e-12■■■■■ 39
DDX55Q8NHQ9 CCS-206ENST00000530961 1214 ntTSL 518.31■□□□□ 0.523e-9■■■■■ 39
DDX55Q8NHQ9 NME4-208ENST00000454619 719 ntTSL 518.04■□□□□ 0.481e-12■■■■■ 39
DDX55Q8NHQ9 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.462e-8■■■■■ 39
DDX55Q8NHQ9 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.362e-8■■■■■ 39
DDX55Q8NHQ9 CDK10-204ENST00000472018 2532 ntTSL 216.5■□□□□ 0.232e-8■■■■■ 39
DDX55Q8NHQ9 CCS-209ENST00000534763 777 ntTSL 215.69■□□□□ 0.13e-9■■■■■ 39
DDX55Q8NHQ9 SH3BP5L-202ENST00000475978 4122 ntTSL 215.53■□□□□ 0.089e-7■■■■■ 39
DDX55Q8NHQ9 IRGQ-204ENST00000601520 495 ntTSL 315.44■□□□□ 0.062e-8■■■■■ 39
DDX55Q8NHQ9 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.019e-7■■■■■ 39
DDX55Q8NHQ9 CCS-202ENST00000525435 798 ntTSL 214.84□□□□□ -0.033e-9■■■■■ 39
DDX55Q8NHQ9 CDK10-201ENST00000331006 3344 ntTSL 2 BASIC11.9□□□□□ -0.52e-8■■■■■ 39
DDX55Q8NHQ9 PHKA2-207ENST00000481718 3115 ntTSL 211.23□□□□□ -0.613e-12■■■■■ 39
DDX55Q8NHQ9 IRGQ-202ENST00000596409 3752 nt6.2□□□□□ -1.422e-8■■■■■ 39
DDX55Q8NHQ9 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.29■■□□□ 1.641e-9■■■■■ 38.8
DDX55Q8NHQ9 FXN-203ENST00000396366 922 ntTSL 2 BASIC22.66■■□□□ 1.221e-9■■■■■ 38.8
DDX55Q8NHQ9 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.191e-9■■■■■ 38.8
DDX55Q8NHQ9 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC7.02□□□□□ -1.291e-9■■■■■ 38.8
DDX55Q8NHQ9 PLEKHJ1-202ENST00000585423 494 ntTSL 232.86■■■□□ 2.853e-6■■■■■ 38.3
DDX55Q8NHQ9 PLEKHJ1-203ENST00000586497 573 ntTSL 332.19■■■□□ 2.742e-6■■■■■ 38.3
DDX55Q8NHQ9 PNKP-216ENST00000601816 682 ntTSL 332.11■■■□□ 2.733e-6■■■■■ 38.3
Retrieved 100 of 15,504 protein–RNA pairs in 515.1 ms