RNA–Protein interactions for RNA: ENST00000525435.1

CCS-202, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-202ENST00000525435 NISCHQ9Y2I1 1504 aa29.58■■■□□ 2.33
CCS-202ENST00000525435 CCDC180Q9P1Z9 1646 aa26.13■■□□□ 1.77
CCS-202ENST00000525435 ABCC9O60706 1549 aa25.41■■□□□ 1.66
CCS-202ENST00000525435 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
CCS-202ENST00000525435 ZCCHC6Q5VYS8 1495 aaKnown RBP24.65■■□□□ 1.54
CCS-202ENST00000525435 NACADO15069 1562 aa24.63■■□□□ 1.53
CCS-202ENST00000525435 MYO15BQ96JP2 1530 aa24.61■■□□□ 1.53
CCS-202ENST00000525435 RB1CC1Q8TDY2 1594 aa24.56■■□□□ 1.52
CCS-202ENST00000525435 DCAF1Q9Y4B6 1507 aa24.54■■□□□ 1.52
CCS-202ENST00000525435 PABPN1Q86U42 306 aaKnown RBP eCLIP23.84■■□□□ 1.412e-9■■□□□ 11.5
CCS-202ENST00000525435 UNC13AQ9UPW8 1703 aa23.81■■□□□ 1.4
CCS-202ENST00000525435 SCRIBQ14160 1630 aa23.8■■□□□ 1.4
CCS-202ENST00000525435 BICRAQ9NZM4 1560 aa23.76■■□□□ 1.39
CCS-202ENST00000525435 SHROOM4Q9ULL8 1493 aa23.66■■□□□ 1.38
CCS-202ENST00000525435 DNAJC5BQ9UF47 199 aa23.39■■□□□ 1.33
CCS-202ENST00000525435 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.29
CCS-202ENST00000525435 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
CCS-202ENST00000525435 CC2D2AQ9P2K1 1620 aa22.97■■□□□ 1.27
CCS-202ENST00000525435 BAZ1AQ9NRL2 1556 aaPredicted RBP22.9■■□□□ 1.26
CCS-202ENST00000525435 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
CCS-202ENST00000525435 NCAPD3P42695 1498 aa22.78■■□□□ 1.24
CCS-202ENST00000525435 ATAD2BQ9ULI0 1458 aa22.75■■□□□ 1.23
CCS-202ENST00000525435 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
CCS-202ENST00000525435 SMARCA2P51531 1590 aa22.73■■□□□ 1.23
CCS-202ENST00000525435 PEG3Q9GZU2 1588 aa22.68■■□□□ 1.22
CCS-202ENST00000525435 RSF1Q96T23 1441 aaPredicted RBP22.64■■□□□ 1.21
CCS-202ENST00000525435 HMGXB3Q12766 1538 aa22.59■■□□□ 1.21
CCS-202ENST00000525435 BAZ1BQ9UIG0 1483 aaKnown RBP22.55■■□□□ 1.2
CCS-202ENST00000525435 WIZO95785 1651 aa22.45■■□□□ 1.18
CCS-202ENST00000525435 TOP2AP11388 1531 aaKnown RBP22.29■■□□□ 1.16
CCS-202ENST00000525435 SUPT5HO00267 1087 aaKnown RBP22.19■■□□□ 1.14
CCS-202ENST00000525435 CADPSQ9ULU8 1353 aa22.12■■□□□ 1.13
CCS-202ENST00000525435 CCDC88BA6NC98 1476 aa22.07■■□□□ 1.12
CCS-202ENST00000525435 LAMC3Q9Y6N6 1575 aa22.05■■□□□ 1.12
CCS-202ENST00000525435 NESP48681 1621 aa22.02■■□□□ 1.12
CCS-202ENST00000525435 CFTRP13569 1480 aa22■■□□□ 1.11
CCS-202ENST00000525435 PDS5BQ9NTI5 1447 aa21.99■■□□□ 1.11
CCS-202ENST00000525435 ERCC6Q03468 1493 aa21.92■■□□□ 1.1
CCS-202ENST00000525435 FANCD2Q9BXW9 1451 aa21.79■■□□□ 1.08
CCS-202ENST00000525435 CEP164Q9UPV0 1460 aa21.73■■□□□ 1.07
CCS-202ENST00000525435 KIF21AQ7Z4S6 1674 aa21.67■■□□□ 1.06
CCS-202ENST00000525435 MRC2Q9UBG0 1479 aa21.67■■□□□ 1.06
CCS-202ENST00000525435 CUX2O14529 1486 aa21.66■■□□□ 1.06
CCS-202ENST00000525435 PRDM2Q13029 1718 aa21.63■■□□□ 1.05
CCS-202ENST00000525435 THOC2Q8NI27 1593 aaKnown RBP21.61■■□□□ 1.05
CCS-202ENST00000525435 WDR62O43379 1518 aa21.57■■□□□ 1.04
CCS-202ENST00000525435 ABCC8Q09428 1581 aa21.57■■□□□ 1.04
CCS-202ENST00000525435 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
CCS-202ENST00000525435 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
CCS-202ENST00000525435 DNMBPQ6XZF7 1577 aa21.42■■□□□ 1.02
CCS-202ENST00000525435 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1.01
CCS-202ENST00000525435 DNAJC5Q9H3Z4 198 aa21.33■■□□□ 1.01
CCS-202ENST00000525435 CUX1P39880 1505 aa21.33■■□□□ 1
CCS-202ENST00000525435 IFT140Q96RY7 1462 aa21.32■■□□□ 1
CCS-202ENST00000525435 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
CCS-202ENST00000525435 SOGA1O94964 1423 aa21.27■■□□□ 1
CCS-202ENST00000525435 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
CCS-202ENST00000525435 TOP2BQ02880 1626 aa21.2■□□□□ 0.98
CCS-202ENST00000525435 RAD54L2Q9Y4B4 1467 aa21.17■□□□□ 0.98
CCS-202ENST00000525435 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
CCS-202ENST00000525435 SYNJ1O43426 1573 aa21.15■□□□□ 0.98
CCS-202ENST00000525435 BIVM-ERCC5R4GMW8 1640 aa21.15■□□□□ 0.98
CCS-202ENST00000525435 ZNF608Q9ULD9 1512 aaPredicted RBP21.13■□□□□ 0.97
CCS-202ENST00000525435 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CCS-202ENST00000525435 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
CCS-202ENST00000525435 AQRO60306 1485 aaKnown RBP eCLIP21.07■□□□□ 0.964e-36■■■■■ 27.3
CCS-202ENST00000525435 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
CCS-202ENST00000525435 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
CCS-202ENST00000525435 GAPVD1Q14C86 1478 aa20.99■□□□□ 0.95
CCS-202ENST00000525435 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
CCS-202ENST00000525435 GRIN2BQ13224 1484 aa20.97■□□□□ 0.95
CCS-202ENST00000525435 KIF27Q86VH2 1401 aa20.91■□□□□ 0.94
CCS-202ENST00000525435 OSCARQ8IYS5 282 aa20.9■□□□□ 0.94
CCS-202ENST00000525435 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.94
CCS-202ENST00000525435 MAGI1Q96QZ7 1491 aaPredicted RBP20.89■□□□□ 0.94
CCS-202ENST00000525435 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
CCS-202ENST00000525435 CHMP7Q8WUX9 453 aaPredicted RBP20.85■□□□□ 0.93
CCS-202ENST00000525435 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
CCS-202ENST00000525435 SNAPC4Q5SXM2 1469 aa20.84■□□□□ 0.93
CCS-202ENST00000525435 IGF1RP08069 1367 aa20.83■□□□□ 0.92
CCS-202ENST00000525435 FBLN2P98095 1184 aa20.82■□□□□ 0.92
CCS-202ENST00000525435 SYNJ2O15056 1496 aa20.81■□□□□ 0.92
CCS-202ENST00000525435 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
CCS-202ENST00000525435 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
CCS-202ENST00000525435 CARMIL1Q5VZK9 1371 aa20.69■□□□□ 0.9
CCS-202ENST00000525435 ADAMTS12P58397 1594 aa20.68■□□□□ 0.9
CCS-202ENST00000525435 GRIN2AQ12879 1464 aa20.67■□□□□ 0.9
CCS-202ENST00000525435 RUSC2Q8N2Y8 1516 aa20.67■□□□□ 0.9
CCS-202ENST00000525435 EEA1Q15075 1411 aa20.66■□□□□ 0.9
CCS-202ENST00000525435 CSRNP3Q8WYN3 585 aa20.64■□□□□ 0.89
CCS-202ENST00000525435 CHD1O14646 1710 aa20.63■□□□□ 0.89
CCS-202ENST00000525435 CUL7Q14999 1698 aa20.61■□□□□ 0.89
CCS-202ENST00000525435 NUP160Q12769 1436 aa20.61■□□□□ 0.89
CCS-202ENST00000525435 RAPGEF2Q9Y4G8 1499 aa20.55■□□□□ 0.88
CCS-202ENST00000525435 PRXQ9BXM0 1461 aa20.54■□□□□ 0.88
CCS-202ENST00000525435 CLASP1Q7Z460 1538 aa20.53■□□□□ 0.88
CCS-202ENST00000525435 CEP170Q5SW79 1584 aa20.48■□□□□ 0.87
CCS-202ENST00000525435 FAM9AQ8IZU1 332 aaPredicted RBP20.48■□□□□ 0.87
CCS-202ENST00000525435 JPH4Q96JJ6 628 aa20.48■□□□□ 0.87
CCS-202ENST00000525435 KIAA0586Q9BVV6 1533 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms