RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 NISCHQ9Y2I1 1504 aa49.96■■■■■ 5.59
CCS-208ENST00000533244 CCDC180Q9P1Z9 1646 aa44.46■■■■■ 4.71
CCS-208ENST00000533244 ABCC9O60706 1549 aa43.43■■■■■ 4.54
CCS-208ENST00000533244 RB1CC1Q8TDY2 1594 aa41.81■■■■■ 4.28
CCS-208ENST00000533244 NACADO15069 1562 aa41.79■■■■■ 4.28
CCS-208ENST00000533244 ZCCHC6Q5VYS8 1495 aaKnown RBP41.64■■■■■ 4.26
CCS-208ENST00000533244 MYO15BQ96JP2 1530 aa41.58■■■■■ 4.25
CCS-208ENST00000533244 DCAF8L2P0C7V8 631 aa41.54■■■■■ 4.24
CCS-208ENST00000533244 DCAF1Q9Y4B6 1507 aa41.4■■■■■ 4.22
CCS-208ENST00000533244 UNC13AQ9UPW8 1703 aa40.9■■■■■ 4.14
CCS-208ENST00000533244 BICRAQ9NZM4 1560 aa40.6■■■■■ 4.09
CCS-208ENST00000533244 PABPN1Q86U42 306 aaKnown RBP eCLIP40.53■■■■■ 4.082e-9■■□□□ 11.5
CCS-208ENST00000533244 SCRIBQ14160 1630 aa40.49■■■■■ 4.07
CCS-208ENST00000533244 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.03
CCS-208ENST00000533244 DNAJC5BQ9UF47 199 aa39.9■■■■□ 3.98
CCS-208ENST00000533244 EIF4G1Q04637 1599 aaKnown RBP39.5■■■■□ 3.91
CCS-208ENST00000533244 CC2D2AQ9P2K1 1620 aa39.33■■■■□ 3.89
CCS-208ENST00000533244 CECR2Q9BXF3 1484 aa39.04■■■■□ 3.84
CCS-208ENST00000533244 SMARCA4P51532 1647 aa38.77■■■■□ 3.8
CCS-208ENST00000533244 BAZ1AQ9NRL2 1556 aaPredicted RBP38.72■■■■□ 3.79
CCS-208ENST00000533244 NCAPD3P42695 1498 aa38.57■■■■□ 3.77
CCS-208ENST00000533244 ATAD2BQ9ULI0 1458 aa38.56■■■■□ 3.76
CCS-208ENST00000533244 SMARCA2P51531 1590 aa38.51■■■■□ 3.76
CCS-208ENST00000533244 MROH2BQ7Z745 1585 aa38.5■■■■□ 3.75
CCS-208ENST00000533244 PEG3Q9GZU2 1588 aa38.45■■■■□ 3.75
CCS-208ENST00000533244 HMGXB3Q12766 1538 aa38.38■■■■□ 3.74
CCS-208ENST00000533244 BAZ1BQ9UIG0 1483 aaKnown RBP38.21■■■■□ 3.71
CCS-208ENST00000533244 WIZO95785 1651 aa38.06■■■■□ 3.68
CCS-208ENST00000533244 RSF1Q96T23 1441 aaPredicted RBP38.04■■■■□ 3.68
CCS-208ENST00000533244 TOP2AP11388 1531 aaKnown RBP37.69■■■■□ 3.62
CCS-208ENST00000533244 NESP48681 1621 aa37.6■■■■□ 3.61
CCS-208ENST00000533244 LAMC3Q9Y6N6 1575 aa37.54■■■■□ 3.6
CCS-208ENST00000533244 ERCC6Q03468 1493 aa37.41■■■■□ 3.58
CCS-208ENST00000533244 CADPSQ9ULU8 1353 aa37.4■■■■□ 3.58
CCS-208ENST00000533244 PDS5BQ9NTI5 1447 aa37.25■■■■□ 3.55
CCS-208ENST00000533244 CCDC88BA6NC98 1476 aa37.22■■■■□ 3.55
CCS-208ENST00000533244 CFTRP13569 1480 aa37.21■■■■□ 3.55
CCS-208ENST00000533244 KIF21AQ7Z4S6 1674 aa37.17■■■■□ 3.54
CCS-208ENST00000533244 CUX2O14529 1486 aa37.11■■■■□ 3.53
CCS-208ENST00000533244 THOC2Q8NI27 1593 aaKnown RBP37.09■■■■□ 3.53
CCS-208ENST00000533244 FANCD2Q9BXW9 1451 aa36.97■■■■□ 3.51
CCS-208ENST00000533244 PRDM2Q13029 1718 aa36.93■■■■□ 3.5
CCS-208ENST00000533244 CEP164Q9UPV0 1460 aa36.92■■■■□ 3.5
CCS-208ENST00000533244 SUPT5HO00267 1087 aaKnown RBP36.92■■■■□ 3.5
CCS-208ENST00000533244 MRC2Q9UBG0 1479 aa36.89■■■■□ 3.5
CCS-208ENST00000533244 WDR62O43379 1518 aa36.8■■■■□ 3.48
CCS-208ENST00000533244 URB2Q14146 1524 aaKnown RBP36.63■■■■□ 3.45
CCS-208ENST00000533244 TOPBP1Q92547 1522 aa36.39■■■■□ 3.42
CCS-208ENST00000533244 ABCC8Q09428 1581 aa36.38■■■■□ 3.41
CCS-208ENST00000533244 DNMBPQ6XZF7 1577 aa36.35■■■■□ 3.41
CCS-208ENST00000533244 IFT140Q96RY7 1462 aa36.17■■■■□ 3.38
CCS-208ENST00000533244 CUX1P39880 1505 aa36.12■■■■□ 3.37
CCS-208ENST00000533244 POLA1P09884 1462 aaPredicted RBP36.09■■■■□ 3.37
CCS-208ENST00000533244 TARBP1Q13395 1621 aaKnown RBP36.03■■■■□ 3.36
CCS-208ENST00000533244 ZNF608Q9ULD9 1512 aaPredicted RBP36■■■■□ 3.35
CCS-208ENST00000533244 FGD5Q6ZNL6 1462 aa35.98■■■■□ 3.35
CCS-208ENST00000533244 DNAJC5Q9H3Z4 198 aa35.95■■■■□ 3.35
CCS-208ENST00000533244 RAD54L2Q9Y4B4 1467 aa35.89■■■■□ 3.34
CCS-208ENST00000533244 SOGA1O94964 1423 aa35.89■■■■□ 3.34
CCS-208ENST00000533244 EIF4G3O43432 1585 aaKnown RBP35.88■■■■□ 3.33
CCS-208ENST00000533244 WRNQ14191 1432 aaPredicted RBP eCLIP35.85■■■■□ 3.33
CCS-208ENST00000533244 BIVM-ERCC5R4GMW8 1640 aa35.82■■■■□ 3.32
CCS-208ENST00000533244 TOP2BQ02880 1626 aa35.81■■■■□ 3.32
CCS-208ENST00000533244 SYNJ1O43426 1573 aa35.79■■■■□ 3.32
CCS-208ENST00000533244 AQRO60306 1485 aaKnown RBP eCLIP35.76■■■■□ 3.321e-16■■■■■ 45.5
CCS-208ENST00000533244 WDR97A6NE52 1622 aa35.76■■■■□ 3.32
CCS-208ENST00000533244 TDRD9Q8NDG6 1382 aaKnown RBP35.68■■■■□ 3.3
CCS-208ENST00000533244 ABCA10Q8WWZ4 1543 aa35.66■■■■□ 3.3
CCS-208ENST00000533244 ABCA5Q8WWZ7 1642 aa35.54■■■■□ 3.28
CCS-208ENST00000533244 GRIN2BQ13224 1484 aa35.51■■■■□ 3.27
CCS-208ENST00000533244 GAPVD1Q14C86 1478 aa35.49■■■■□ 3.27
CCS-208ENST00000533244 OSCARQ8IYS5 282 aa35.48■■■■□ 3.27
CCS-208ENST00000533244 SNAPC4Q5SXM2 1469 aa35.45■■■■□ 3.27
CCS-208ENST00000533244 PBRM1Q86U86 1689 aa35.44■■■■□ 3.26
CCS-208ENST00000533244 MAGI1Q96QZ7 1491 aaPredicted RBP35.43■■■■□ 3.26
CCS-208ENST00000533244 CHD1O14646 1710 aa35.41■■■■□ 3.26
CCS-208ENST00000533244 SYNJ2O15056 1496 aa35.28■■■■□ 3.24
CCS-208ENST00000533244 FBLN2P98095 1184 aa35.23■■■■□ 3.23
CCS-208ENST00000533244 ERICH3Q5RHP9 1530 aa35.23■■■■□ 3.23
CCS-208ENST00000533244 ADAMTS12P58397 1594 aa35.19■■■■□ 3.22
CCS-208ENST00000533244 CHMP7Q8WUX9 453 aaPredicted RBP35.18■■■■□ 3.22
CCS-208ENST00000533244 FHAD1B1AJZ9 1412 aa35.1■■■■□ 3.21
CCS-208ENST00000533244 KIF27Q86VH2 1401 aa35.09■■■■□ 3.21
CCS-208ENST00000533244 CLASP1Q7Z460 1538 aa35.07■■■■□ 3.2
CCS-208ENST00000533244 GRIN2AQ12879 1464 aa35.06■■■■□ 3.2
CCS-208ENST00000533244 ARHGEF11O15085 1522 aa34.98■■■■□ 3.19
CCS-208ENST00000533244 RIMBP3CA6NJZ7 1639 aa34.97■■■■□ 3.19
CCS-208ENST00000533244 RIMBP3BA6NNM3 1639 aa34.97■■■■□ 3.19
CCS-208ENST00000533244 RIMBP3Q9UFD9 1639 aa34.97■■■■□ 3.19
CCS-208ENST00000533244 IGF1RP08069 1367 aa34.97■■■■□ 3.19
CCS-208ENST00000533244 NUP160Q12769 1436 aa34.94■■■■□ 3.18
CCS-208ENST00000533244 CUL7Q14999 1698 aa34.9■■■■□ 3.18
CCS-208ENST00000533244 CEP170Q5SW79 1584 aa34.9■■■■□ 3.18
CCS-208ENST00000533244 TRIM41Q8WV44 630 aa34.89■■■■□ 3.18
CCS-208ENST00000533244 RUSC2Q8N2Y8 1516 aa34.78■■■■□ 3.16
CCS-208ENST00000533244 CARMIL1Q5VZK9 1371 aa34.73■■■■□ 3.15
CCS-208ENST00000533244 ARAP1Q96P48 1450 aa34.7■■■■□ 3.15
CCS-208ENST00000533244 SHROOM2Q13796 1616 aa34.69■■■■□ 3.14
CCS-208ENST00000533244 KIAA0586Q9BVV6 1533 aa34.57■■■■□ 3.12
CCS-208ENST00000533244 ERCC6L2Q5T890 1561 aa34.56■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms