RNA–Protein interactions for RNA: ENST00000530384.5

CCS-205, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 5

Gene CCS, Length 1,196 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-205ENST00000530384 NISCHQ9Y2I1 1504 aa41.68■■■■■ 4.26
CCS-205ENST00000530384 CCDC180Q9P1Z9 1646 aa37.16■■■■□ 3.54
CCS-205ENST00000530384 ABCC9O60706 1549 aa36.44■■■■□ 3.42
CCS-205ENST00000530384 RB1CC1Q8TDY2 1594 aa35.04■■■■□ 3.2
CCS-205ENST00000530384 NACADO15069 1562 aa34.96■■■■□ 3.19
CCS-205ENST00000530384 DCAF8L2P0C7V8 631 aa34.85■■■■□ 3.17
CCS-205ENST00000530384 MYO15BQ96JP2 1530 aa34.72■■■■□ 3.15
CCS-205ENST00000530384 ZCCHC6Q5VYS8 1495 aaKnown RBP34.7■■■■□ 3.15
CCS-205ENST00000530384 DCAF1Q9Y4B6 1507 aa34.51■■■■□ 3.12
CCS-205ENST00000530384 UNC13AQ9UPW8 1703 aa34.22■■■■□ 3.07
CCS-205ENST00000530384 PABPN1Q86U42 306 aaKnown RBP eCLIP34■■■■□ 3.032e-9■■□□□ 11.5
CCS-205ENST00000530384 BICRAQ9NZM4 1560 aa33.94■■■■□ 3.02
CCS-205ENST00000530384 SCRIBQ14160 1630 aa33.84■■■■□ 3.01
CCS-205ENST00000530384 DNAJC5BQ9UF47 199 aa33.76■■■□□ 2.99
CCS-205ENST00000530384 SHROOM4Q9ULL8 1493 aa33.64■■■□□ 2.98
CCS-205ENST00000530384 EIF4G1Q04637 1599 aaKnown RBP33.07■■■□□ 2.88
CCS-205ENST00000530384 CC2D2AQ9P2K1 1620 aa32.97■■■□□ 2.87
CCS-205ENST00000530384 CECR2Q9BXF3 1484 aa32.77■■■□□ 2.84
CCS-205ENST00000530384 SMARCA4P51532 1647 aa32.38■■■□□ 2.77
CCS-205ENST00000530384 BAZ1AQ9NRL2 1556 aaPredicted RBP32.34■■■□□ 2.77
CCS-205ENST00000530384 NCAPD3P42695 1498 aa32.24■■■□□ 2.75
CCS-205ENST00000530384 ATAD2BQ9ULI0 1458 aa32.23■■■□□ 2.75
CCS-205ENST00000530384 SMARCA2P51531 1590 aa32.22■■■□□ 2.75
CCS-205ENST00000530384 MROH2BQ7Z745 1585 aa32.1■■■□□ 2.73
CCS-205ENST00000530384 HMGXB3Q12766 1538 aa32.09■■■□□ 2.73
CCS-205ENST00000530384 PEG3Q9GZU2 1588 aa32.08■■■□□ 2.73
CCS-205ENST00000530384 BAZ1BQ9UIG0 1483 aaKnown RBP31.97■■■□□ 2.71
CCS-205ENST00000530384 WIZO95785 1651 aa31.75■■■□□ 2.67
CCS-205ENST00000530384 RSF1Q96T23 1441 aaPredicted RBP31.68■■■□□ 2.66
CCS-205ENST00000530384 NESP48681 1621 aa31.47■■■□□ 2.63
CCS-205ENST00000530384 ERCC6Q03468 1493 aa31.45■■■□□ 2.62
CCS-205ENST00000530384 TOP2AP11388 1531 aaKnown RBP31.44■■■□□ 2.62
CCS-205ENST00000530384 LAMC3Q9Y6N6 1575 aa31.43■■■□□ 2.62
CCS-205ENST00000530384 CADPSQ9ULU8 1353 aa31.3■■■□□ 2.6
CCS-205ENST00000530384 PDS5BQ9NTI5 1447 aa31.23■■■□□ 2.59
CCS-205ENST00000530384 CUX2O14529 1486 aa31.18■■■□□ 2.58
CCS-205ENST00000530384 KIF21AQ7Z4S6 1674 aa31.13■■■□□ 2.57
CCS-205ENST00000530384 CFTRP13569 1480 aa31.08■■■□□ 2.57
CCS-205ENST00000530384 THOC2Q8NI27 1593 aaKnown RBP31.06■■■□□ 2.56
CCS-205ENST00000530384 CCDC88BA6NC98 1476 aa31.04■■■□□ 2.56
CCS-205ENST00000530384 FANCD2Q9BXW9 1451 aa30.94■■■□□ 2.54
CCS-205ENST00000530384 CEP164Q9UPV0 1460 aa30.92■■■□□ 2.54
CCS-205ENST00000530384 MRC2Q9UBG0 1479 aa30.9■■■□□ 2.54
CCS-205ENST00000530384 PRDM2Q13029 1718 aa30.88■■■□□ 2.53
CCS-205ENST00000530384 WDR62O43379 1518 aa30.81■■■□□ 2.52
CCS-205ENST00000530384 SUPT5HO00267 1087 aaKnown RBP30.76■■■□□ 2.51
CCS-205ENST00000530384 DNAJC5Q9H3Z4 198 aa30.66■■■□□ 2.5
CCS-205ENST00000530384 URB2Q14146 1524 aaKnown RBP30.62■■■□□ 2.49
CCS-205ENST00000530384 ABCC8Q09428 1581 aa30.45■■■□□ 2.47
CCS-205ENST00000530384 TOPBP1Q92547 1522 aa30.42■■■□□ 2.46
CCS-205ENST00000530384 DNMBPQ6XZF7 1577 aa30.39■■■□□ 2.46
CCS-205ENST00000530384 IFT140Q96RY7 1462 aa30.28■■■□□ 2.44
CCS-205ENST00000530384 POLA1P09884 1462 aaPredicted RBP30.15■■■□□ 2.42
CCS-205ENST00000530384 CUX1P39880 1505 aa30.12■■■□□ 2.41
CCS-205ENST00000530384 ZNF608Q9ULD9 1512 aaPredicted RBP30.12■■■□□ 2.41
CCS-205ENST00000530384 TARBP1Q13395 1621 aaKnown RBP30.1■■■□□ 2.41
CCS-205ENST00000530384 FGD5Q6ZNL6 1462 aa30.06■■■□□ 2.4
CCS-205ENST00000530384 SOGA1O94964 1423 aa30.03■■■□□ 2.4
CCS-205ENST00000530384 EIF4G3O43432 1585 aaKnown RBP30.03■■■□□ 2.4
CCS-205ENST00000530384 RAD54L2Q9Y4B4 1467 aa30■■■□□ 2.39
CCS-205ENST00000530384 AQRO60306 1485 aaKnown RBP eCLIP29.93■■■□□ 2.381e-16■■■■■ 45.5
CCS-205ENST00000530384 WDR97A6NE52 1622 aa29.91■■■□□ 2.38
CCS-205ENST00000530384 WRNQ14191 1432 aaPredicted RBP eCLIP29.9■■■□□ 2.38
CCS-205ENST00000530384 BIVM-ERCC5R4GMW8 1640 aa29.86■■■□□ 2.37
CCS-205ENST00000530384 TDRD9Q8NDG6 1382 aaKnown RBP29.86■■■□□ 2.37
CCS-205ENST00000530384 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
CCS-205ENST00000530384 OSCARQ8IYS5 282 aa29.85■■■□□ 2.37
CCS-205ENST00000530384 SYNJ1O43426 1573 aa29.81■■■□□ 2.36
CCS-205ENST00000530384 ABCA10Q8WWZ4 1543 aa29.77■■■□□ 2.36
CCS-205ENST00000530384 GRIN2BQ13224 1484 aa29.71■■■□□ 2.35
CCS-205ENST00000530384 GAPVD1Q14C86 1478 aa29.68■■■□□ 2.34
CCS-205ENST00000530384 CHD1O14646 1710 aa29.68■■■□□ 2.34
CCS-205ENST00000530384 SNAPC4Q5SXM2 1469 aa29.67■■■□□ 2.34
CCS-205ENST00000530384 ABCA5Q8WWZ7 1642 aa29.67■■■□□ 2.34
CCS-205ENST00000530384 MAGI1Q96QZ7 1491 aaPredicted RBP29.66■■■□□ 2.34
CCS-205ENST00000530384 PBRM1Q86U86 1689 aa29.65■■■□□ 2.34
CCS-205ENST00000530384 FBLN2P98095 1184 aa29.61■■■□□ 2.33
CCS-205ENST00000530384 CHMP7Q8WUX9 453 aaPredicted RBP29.53■■■□□ 2.32
CCS-205ENST00000530384 SYNJ2O15056 1496 aa29.53■■■□□ 2.32
CCS-205ENST00000530384 TRIM41Q8WV44 630 aa29.51■■■□□ 2.31
CCS-205ENST00000530384 ERICH3Q5RHP9 1530 aa29.43■■■□□ 2.3
CCS-205ENST00000530384 ADAMTS12P58397 1594 aa29.39■■■□□ 2.3
CCS-205ENST00000530384 RIMBP3CA6NJZ7 1639 aa29.38■■■□□ 2.29
CCS-205ENST00000530384 RIMBP3BA6NNM3 1639 aa29.38■■■□□ 2.29
CCS-205ENST00000530384 RIMBP3Q9UFD9 1639 aa29.38■■■□□ 2.29
CCS-205ENST00000530384 ARHGEF11O15085 1522 aa29.36■■■□□ 2.29
CCS-205ENST00000530384 FHAD1B1AJZ9 1412 aa29.35■■■□□ 2.29
CCS-205ENST00000530384 CLASP1Q7Z460 1538 aa29.35■■■□□ 2.29
CCS-205ENST00000530384 GRIN2AQ12879 1464 aa29.32■■■□□ 2.28
CCS-205ENST00000530384 KIF27Q86VH2 1401 aa29.3■■■□□ 2.28
CCS-205ENST00000530384 NUP160Q12769 1436 aa29.2■■■□□ 2.26
CCS-205ENST00000530384 CEP170Q5SW79 1584 aa29.17■■■□□ 2.26
CCS-205ENST00000530384 IGF1RP08069 1367 aa29.16■■■□□ 2.26
CCS-205ENST00000530384 CUL7Q14999 1698 aa29.15■■■□□ 2.26
CCS-205ENST00000530384 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
CCS-205ENST00000530384 CYB5RLQ6IPT4 315 aa29.08■■■□□ 2.25
CCS-205ENST00000530384 CARMIL1Q5VZK9 1371 aa29.01■■■□□ 2.24
CCS-205ENST00000530384 SHROOM2Q13796 1616 aa29■■■□□ 2.23
CCS-205ENST00000530384 RUSC2Q8N2Y8 1516 aa28.96■■■□□ 2.23
CCS-205ENST00000530384 ERCC6L2Q5T890 1561 aa28.89■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms