RNA–Protein interactions for RNA: ENST00000540683.1

CDCA3-208, Transcript of cell division cycle associated 3, humanhuman

TSL 2 BASIC

Gene CDCA3, Length 985 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-208ENST00000540683 NISCHQ9Y2I1 1504 aa25.42■■□□□ 1.66
CDCA3-208ENST00000540683 CCDC180Q9P1Z9 1646 aa22.82■■□□□ 1.24
CDCA3-208ENST00000540683 ABCC9O60706 1549 aa22.43■■□□□ 1.18
CDCA3-208ENST00000540683 RB1CC1Q8TDY2 1594 aa21.61■■□□□ 1.05
CDCA3-208ENST00000540683 NACADO15069 1562 aa21.53■■□□□ 1.04
CDCA3-208ENST00000540683 MYO15BQ96JP2 1530 aa21.35■■□□□ 1.01
CDCA3-208ENST00000540683 DCAF8L2P0C7V8 631 aa21.35■■□□□ 1.01
CDCA3-208ENST00000540683 DCAF1Q9Y4B6 1507 aa21.12■□□□□ 0.97
CDCA3-208ENST00000540683 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
CDCA3-208ENST00000540683 UNC13AQ9UPW8 1703 aa20.95■□□□□ 0.94
CDCA3-208ENST00000540683 PABPN1Q86U42 306 aaKnown RBP eCLIP20.87■□□□□ 0.93
CDCA3-208ENST00000540683 SHROOM4Q9ULL8 1493 aa20.82■□□□□ 0.92
CDCA3-208ENST00000540683 BICRAQ9NZM4 1560 aa20.78■□□□□ 0.92
CDCA3-208ENST00000540683 DNAJC5BQ9UF47 199 aa20.68■□□□□ 0.9
CDCA3-208ENST00000540683 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
CDCA3-208ENST00000540683 CHIC1Q5VXU3 224 aa20.52■□□□□ 0.88
CDCA3-208ENST00000540683 EIF4G1Q04637 1599 aaKnown RBP20.34■□□□□ 0.85
CDCA3-208ENST00000540683 CC2D2AQ9P2K1 1620 aa20.31■□□□□ 0.84
CDCA3-208ENST00000540683 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
CDCA3-208ENST00000540683 AEBP2Q6ZN18 517 aaPredicted RBP20.18■□□□□ 0.82
CDCA3-208ENST00000540683 SMARCA2P51531 1590 aa19.82■□□□□ 0.76
CDCA3-208ENST00000540683 NCAPD3P42695 1498 aa19.81■□□□□ 0.76
CDCA3-208ENST00000540683 BAZ1AQ9NRL2 1556 aaPredicted RBP19.8■□□□□ 0.76
CDCA3-208ENST00000540683 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
CDCA3-208ENST00000540683 ATAD2BQ9ULI0 1458 aa19.73■□□□□ 0.75
CDCA3-208ENST00000540683 HMGXB3Q12766 1538 aa19.72■□□□□ 0.75
CDCA3-208ENST00000540683 PEG3Q9GZU2 1588 aa19.64■□□□□ 0.73
CDCA3-208ENST00000540683 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
CDCA3-208ENST00000540683 MROH2BQ7Z745 1585 aa19.5■□□□□ 0.71
CDCA3-208ENST00000540683 ERCC6Q03468 1493 aa19.48■□□□□ 0.71
CDCA3-208ENST00000540683 CUX2O14529 1486 aa19.4■□□□□ 0.7
CDCA3-208ENST00000540683 LAMC3Q9Y6N6 1575 aa19.39■□□□□ 0.69
CDCA3-208ENST00000540683 PDS5BQ9NTI5 1447 aa19.3■□□□□ 0.68
CDCA3-208ENST00000540683 WIZO95785 1651 aa19.28■□□□□ 0.68
CDCA3-208ENST00000540683 NESP48681 1621 aa19.26■□□□□ 0.67
CDCA3-208ENST00000540683 RSF1Q96T23 1441 aaPredicted RBP19.23■□□□□ 0.67
CDCA3-208ENST00000540683 CADPSQ9ULU8 1353 aa19.22■□□□□ 0.67
CDCA3-208ENST00000540683 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
CDCA3-208ENST00000540683 THOC2Q8NI27 1593 aaKnown RBP19.11■□□□□ 0.65
CDCA3-208ENST00000540683 KIF21AQ7Z4S6 1674 aa19.1■□□□□ 0.65
CDCA3-208ENST00000540683 DNAJC5Q9H3Z4 198 aa19.04■□□□□ 0.64
CDCA3-208ENST00000540683 CFTRP13569 1480 aa19.03■□□□□ 0.64
CDCA3-208ENST00000540683 MRC2Q9UBG0 1479 aa19.03■□□□□ 0.64
CDCA3-208ENST00000540683 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
CDCA3-208ENST00000540683 FANCD2Q9BXW9 1451 aa18.98■□□□□ 0.63
CDCA3-208ENST00000540683 WDR62O43379 1518 aa18.96■□□□□ 0.63
CDCA3-208ENST00000540683 PRDM2Q13029 1718 aa18.92■□□□□ 0.62
CDCA3-208ENST00000540683 CCDC88BA6NC98 1476 aa18.89■□□□□ 0.61
CDCA3-208ENST00000540683 ABCC8Q09428 1581 aa18.79■□□□□ 0.6
CDCA3-208ENST00000540683 URB2Q14146 1524 aaKnown RBP18.73■□□□□ 0.59
CDCA3-208ENST00000540683 IFT140Q96RY7 1462 aa18.65■□□□□ 0.58
CDCA3-208ENST00000540683 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
CDCA3-208ENST00000540683 DNMBPQ6XZF7 1577 aa18.63■□□□□ 0.57
CDCA3-208ENST00000540683 OSCARQ8IYS5 282 aa18.54■□□□□ 0.56
CDCA3-208ENST00000540683 SUPT5HO00267 1087 aaKnown RBP18.53■□□□□ 0.56
CDCA3-208ENST00000540683 WDR97A6NE52 1622 aa18.45■□□□□ 0.54
CDCA3-208ENST00000540683 POLA1P09884 1462 aaPredicted RBP18.44■□□□□ 0.54
CDCA3-208ENST00000540683 ZNF608Q9ULD9 1512 aaPredicted RBP18.44■□□□□ 0.54
CDCA3-208ENST00000540683 EIF4G3O43432 1585 aaKnown RBP18.42■□□□□ 0.54
CDCA3-208ENST00000540683 TARBP1Q13395 1621 aaKnown RBP18.42■□□□□ 0.54
CDCA3-208ENST00000540683 SOGA1O94964 1423 aa18.41■□□□□ 0.54
CDCA3-208ENST00000540683 FGD5Q6ZNL6 1462 aa18.35■□□□□ 0.53
CDCA3-208ENST00000540683 CUX1P39880 1505 aa18.33■□□□□ 0.53
CDCA3-208ENST00000540683 AQRO60306 1485 aaKnown RBP eCLIP18.33■□□□□ 0.537e-7■■■■□ 24.1
CDCA3-208ENST00000540683 RAD54L2Q9Y4B4 1467 aa18.3■□□□□ 0.52
CDCA3-208ENST00000540683 TDRD9Q8NDG6 1382 aaKnown RBP18.27■□□□□ 0.51
CDCA3-208ENST00000540683 MAGI1Q96QZ7 1491 aaPredicted RBP18.26■□□□□ 0.51
CDCA3-208ENST00000540683 GRIN2BQ13224 1484 aa18.26■□□□□ 0.51
CDCA3-208ENST00000540683 FBLN2P98095 1184 aa18.25■□□□□ 0.51
CDCA3-208ENST00000540683 TRIM41Q8WV44 630 aa18.25■□□□□ 0.51
CDCA3-208ENST00000540683 WRNQ14191 1432 aaPredicted RBP eCLIP18.24■□□□□ 0.51
CDCA3-208ENST00000540683 CHD1O14646 1710 aa18.23■□□□□ 0.51
CDCA3-208ENST00000540683 ABCA10Q8WWZ4 1543 aa18.23■□□□□ 0.51
CDCA3-208ENST00000540683 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
CDCA3-208ENST00000540683 GAPVD1Q14C86 1478 aa18.2■□□□□ 0.5
CDCA3-208ENST00000540683 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
CDCA3-208ENST00000540683 SNAPC4Q5SXM2 1469 aa18.19■□□□□ 0.5
CDCA3-208ENST00000540683 BIVM-ERCC5R4GMW8 1640 aa18.18■□□□□ 0.5
CDCA3-208ENST00000540683 SYNJ1O43426 1573 aa18.17■□□□□ 0.5
CDCA3-208ENST00000540683 SYNJ2O15056 1496 aa18.16■□□□□ 0.5
CDCA3-208ENST00000540683 RIMBP3CA6NJZ7 1639 aa18.16■□□□□ 0.5
CDCA3-208ENST00000540683 RIMBP3BA6NNM3 1639 aa18.16■□□□□ 0.5
CDCA3-208ENST00000540683 RIMBP3Q9UFD9 1639 aa18.16■□□□□ 0.5
CDCA3-208ENST00000540683 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
CDCA3-208ENST00000540683 PBRM1Q86U86 1689 aa18.15■□□□□ 0.5
CDCA3-208ENST00000540683 ARHGEF11O15085 1522 aa18.14■□□□□ 0.49
CDCA3-208ENST00000540683 ABCA5Q8WWZ7 1642 aa18.12■□□□□ 0.49
CDCA3-208ENST00000540683 ERICH3Q5RHP9 1530 aa18.03■□□□□ 0.48
CDCA3-208ENST00000540683 CLASP1Q7Z460 1538 aa18.03■□□□□ 0.48
CDCA3-208ENST00000540683 FHAD1B1AJZ9 1412 aa18■□□□□ 0.47
CDCA3-208ENST00000540683 CYB5RLQ6IPT4 315 aa18■□□□□ 0.47
CDCA3-208ENST00000540683 GRIN2AQ12879 1464 aa17.98■□□□□ 0.47
CDCA3-208ENST00000540683 ADAMTS12P58397 1594 aa17.98■□□□□ 0.47
CDCA3-208ENST00000540683 ARAP1Q96P48 1450 aa17.94■□□□□ 0.46
CDCA3-208ENST00000540683 NUP160Q12769 1436 aa17.9■□□□□ 0.46
CDCA3-208ENST00000540683 KIF27Q86VH2 1401 aa17.9■□□□□ 0.46
CDCA3-208ENST00000540683 CUL7Q14999 1698 aa17.84■□□□□ 0.45
CDCA3-208ENST00000540683 CEP170Q5SW79 1584 aa17.83■□□□□ 0.45
CDCA3-208ENST00000540683 SHROOM2Q13796 1616 aa17.8■□□□□ 0.44
CDCA3-208ENST00000540683 TRHP20396 242 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms