RNA–Protein interactions for RNA: ENST00000534763.1

CCS-209, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-209ENST00000534763 NISCHQ9Y2I1 1504 aa31.44■■■□□ 2.62
CCS-209ENST00000534763 CCDC180Q9P1Z9 1646 aa27.96■■■□□ 2.07
CCS-209ENST00000534763 ABCC9O60706 1549 aa27.28■■□□□ 1.96
CCS-209ENST00000534763 NACADO15069 1562 aa26.33■■□□□ 1.8
CCS-209ENST00000534763 RB1CC1Q8TDY2 1594 aa26.33■■□□□ 1.8
CCS-209ENST00000534763 MYO15BQ96JP2 1530 aa26.24■■□□□ 1.79
CCS-209ENST00000534763 ZCCHC6Q5VYS8 1495 aaKnown RBP26.19■■□□□ 1.78
CCS-209ENST00000534763 DCAF8L2P0C7V8 631 aa26.16■■□□□ 1.78
CCS-209ENST00000534763 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
CCS-209ENST00000534763 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
CCS-209ENST00000534763 BICRAQ9NZM4 1560 aa25.5■■□□□ 1.67
CCS-209ENST00000534763 PABPN1Q86U42 306 aaKnown RBP eCLIP25.49■■□□□ 1.672e-9■■□□□ 11.5
CCS-209ENST00000534763 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
CCS-209ENST00000534763 SHROOM4Q9ULL8 1493 aa25.37■■□□□ 1.65
CCS-209ENST00000534763 DNAJC5BQ9UF47 199 aa25.07■■□□□ 1.6
CCS-209ENST00000534763 EIF4G1Q04637 1599 aaKnown RBP24.83■■□□□ 1.57
CCS-209ENST00000534763 CC2D2AQ9P2K1 1620 aa24.71■■□□□ 1.55
CCS-209ENST00000534763 CECR2Q9BXF3 1484 aa24.57■■□□□ 1.52
CCS-209ENST00000534763 BAZ1AQ9NRL2 1556 aaPredicted RBP24.38■■□□□ 1.49
CCS-209ENST00000534763 SMARCA4P51532 1647 aa24.36■■□□□ 1.49
CCS-209ENST00000534763 NCAPD3P42695 1498 aa24.31■■□□□ 1.48
CCS-209ENST00000534763 ATAD2BQ9ULI0 1458 aa24.27■■□□□ 1.48
CCS-209ENST00000534763 SMARCA2P51531 1590 aa24.26■■□□□ 1.47
CCS-209ENST00000534763 PEG3Q9GZU2 1588 aa24.2■■□□□ 1.47
CCS-209ENST00000534763 MROH2BQ7Z745 1585 aa24.18■■□□□ 1.46
CCS-209ENST00000534763 HMGXB3Q12766 1538 aa24.16■■□□□ 1.46
CCS-209ENST00000534763 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
CCS-209ENST00000534763 RSF1Q96T23 1441 aaPredicted RBP23.93■■□□□ 1.42
CCS-209ENST00000534763 WIZO95785 1651 aa23.88■■□□□ 1.41
CCS-209ENST00000534763 TOP2AP11388 1531 aaKnown RBP23.7■■□□□ 1.38
CCS-209ENST00000534763 LAMC3Q9Y6N6 1575 aa23.64■■□□□ 1.37
CCS-209ENST00000534763 NESP48681 1621 aa23.6■■□□□ 1.37
CCS-209ENST00000534763 CADPSQ9ULU8 1353 aa23.57■■□□□ 1.36
CCS-209ENST00000534763 ERCC6Q03468 1493 aa23.56■■□□□ 1.36
CCS-209ENST00000534763 PDS5BQ9NTI5 1447 aa23.5■■□□□ 1.35
CCS-209ENST00000534763 CFTRP13569 1480 aa23.43■■□□□ 1.34
CCS-209ENST00000534763 CCDC88BA6NC98 1476 aa23.41■■□□□ 1.34
CCS-209ENST00000534763 CUX2O14529 1486 aa23.38■■□□□ 1.33
CCS-209ENST00000534763 KIF21AQ7Z4S6 1674 aa23.3■■□□□ 1.32
CCS-209ENST00000534763 THOC2Q8NI27 1593 aaKnown RBP23.28■■□□□ 1.32
CCS-209ENST00000534763 FANCD2Q9BXW9 1451 aa23.26■■□□□ 1.31
CCS-209ENST00000534763 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
CCS-209ENST00000534763 MRC2Q9UBG0 1479 aa23.22■■□□□ 1.31
CCS-209ENST00000534763 SUPT5HO00267 1087 aaKnown RBP23.21■■□□□ 1.31
CCS-209ENST00000534763 PRDM2Q13029 1718 aa23.16■■□□□ 1.3
CCS-209ENST00000534763 WDR62O43379 1518 aa23.15■■□□□ 1.3
CCS-209ENST00000534763 URB2Q14146 1524 aaKnown RBP23.02■■□□□ 1.28
CCS-209ENST00000534763 ABCC8Q09428 1581 aa22.97■■□□□ 1.27
CCS-209ENST00000534763 TOPBP1Q92547 1522 aa22.88■■□□□ 1.25
CCS-209ENST00000534763 DNMBPQ6XZF7 1577 aa22.87■■□□□ 1.25
CCS-209ENST00000534763 IFT140Q96RY7 1462 aa22.79■■□□□ 1.24
CCS-209ENST00000534763 CUX1P39880 1505 aa22.69■■□□□ 1.22
CCS-209ENST00000534763 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
CCS-209ENST00000534763 DNAJC5Q9H3Z4 198 aa22.67■■□□□ 1.22
CCS-209ENST00000534763 TARBP1Q13395 1621 aaKnown RBP22.64■■□□□ 1.21
CCS-209ENST00000534763 FGD5Q6ZNL6 1462 aa22.61■■□□□ 1.21
CCS-209ENST00000534763 SOGA1O94964 1423 aa22.61■■□□□ 1.21
CCS-209ENST00000534763 ZNF608Q9ULD9 1512 aaPredicted RBP22.61■■□□□ 1.21
CCS-209ENST00000534763 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
CCS-209ENST00000534763 RAD54L2Q9Y4B4 1467 aa22.55■■□□□ 1.2
CCS-209ENST00000534763 WDR97A6NE52 1622 aa22.54■■□□□ 1.2
CCS-209ENST00000534763 EIF4G3O43432 1585 aaKnown RBP22.52■■□□□ 1.2
CCS-209ENST00000534763 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
CCS-209ENST00000534763 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
CCS-209ENST00000534763 AQRO60306 1485 aaKnown RBP eCLIP22.49■■□□□ 1.194e-36■■■■■ 27.3
CCS-209ENST00000534763 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
CCS-209ENST00000534763 ABCA10Q8WWZ4 1543 aa22.45■■□□□ 1.18
CCS-209ENST00000534763 TDRD9Q8NDG6 1382 aaKnown RBP22.44■■□□□ 1.18
CCS-209ENST00000534763 OSCARQ8IYS5 282 aa22.4■■□□□ 1.18
CCS-209ENST00000534763 GRIN2BQ13224 1484 aa22.36■■□□□ 1.17
CCS-209ENST00000534763 GAPVD1Q14C86 1478 aa22.34■■□□□ 1.17
CCS-209ENST00000534763 MAGI1Q96QZ7 1491 aaPredicted RBP22.33■■□□□ 1.16
CCS-209ENST00000534763 ABCA5Q8WWZ7 1642 aa22.32■■□□□ 1.16
CCS-209ENST00000534763 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
CCS-209ENST00000534763 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
CCS-209ENST00000534763 SYNJ2O15056 1496 aa22.22■■□□□ 1.15
CCS-209ENST00000534763 FBLN2P98095 1184 aa22.19■■□□□ 1.14
CCS-209ENST00000534763 CHMP7Q8WUX9 453 aaPredicted RBP22.19■■□□□ 1.14
CCS-209ENST00000534763 ERICH3Q5RHP9 1530 aa22.19■■□□□ 1.14
CCS-209ENST00000534763 CHD1O14646 1710 aa22.19■■□□□ 1.14
CCS-209ENST00000534763 FHAD1B1AJZ9 1412 aa22.12■■□□□ 1.13
CCS-209ENST00000534763 KIF27Q86VH2 1401 aa22.12■■□□□ 1.13
CCS-209ENST00000534763 ADAMTS12P58397 1594 aa22.1■■□□□ 1.13
CCS-209ENST00000534763 GRIN2AQ12879 1464 aa22.06■■□□□ 1.12
CCS-209ENST00000534763 CLASP1Q7Z460 1538 aa22.05■■□□□ 1.12
CCS-209ENST00000534763 IGF1RP08069 1367 aa22.03■■□□□ 1.12
CCS-209ENST00000534763 TRIM41Q8WV44 630 aa22■■□□□ 1.11
CCS-209ENST00000534763 NUP160Q12769 1436 aa21.99■■□□□ 1.11
CCS-209ENST00000534763 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
CCS-209ENST00000534763 RIMBP3CA6NJZ7 1639 aa21.96■■□□□ 1.11
CCS-209ENST00000534763 RIMBP3BA6NNM3 1639 aa21.96■■□□□ 1.11
CCS-209ENST00000534763 RIMBP3Q9UFD9 1639 aa21.96■■□□□ 1.11
CCS-209ENST00000534763 CUL7Q14999 1698 aa21.95■■□□□ 1.1
CCS-209ENST00000534763 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
CCS-209ENST00000534763 CARMIL1Q5VZK9 1371 aa21.88■■□□□ 1.09
CCS-209ENST00000534763 RUSC2Q8N2Y8 1516 aa21.81■■□□□ 1.08
CCS-209ENST00000534763 SHROOM2Q13796 1616 aa21.8■■□□□ 1.08
CCS-209ENST00000534763 ARAP1Q96P48 1450 aa21.8■■□□□ 1.08
CCS-209ENST00000534763 KIAA0586Q9BVV6 1533 aa21.78■■□□□ 1.08
CCS-209ENST00000534763 CYB5RLQ6IPT4 315 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms