RNA–Protein interactions for RNA: ENST00000530961.5

CCS-206, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 5

Gene CCS, Length 1,214 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-206ENST00000530961 NISCHQ9Y2I1 1504 aa36.46■■■■□ 3.43
CCS-206ENST00000530961 ABCC9O60706 1549 aa32.4■■■□□ 2.78
CCS-206ENST00000530961 CCDC180Q9P1Z9 1646 aa32.13■■■□□ 2.73
CCS-206ENST00000530961 DNAJC5BQ9UF47 199 aa31.6■■■□□ 2.65
CCS-206ENST00000530961 DCAF8L2P0C7V8 631 aa30.5■■■□□ 2.47
CCS-206ENST00000530961 ZCCHC6Q5VYS8 1495 aaKnown RBP30.41■■■□□ 2.46
CCS-206ENST00000530961 NACADO15069 1562 aa30.31■■■□□ 2.44
CCS-206ENST00000530961 MYO15BQ96JP2 1530 aa30.27■■■□□ 2.44
CCS-206ENST00000530961 RB1CC1Q8TDY2 1594 aa30.25■■■□□ 2.43
CCS-206ENST00000530961 DCAF1Q9Y4B6 1507 aa30.2■■■□□ 2.42
CCS-206ENST00000530961 DNAJC5Q9H3Z4 198 aa30.17■■■□□ 2.42
CCS-206ENST00000530961 PABPN1Q86U42 306 aaKnown RBP eCLIP29.94■■■□□ 2.382e-9■■□□□ 11.5
CCS-206ENST00000530961 SCRIBQ14160 1630 aa29.38■■■□□ 2.29
CCS-206ENST00000530961 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
CCS-206ENST00000530961 CECR2Q9BXF3 1484 aa29.37■■■□□ 2.29
CCS-206ENST00000530961 BICRAQ9NZM4 1560 aa29.31■■■□□ 2.28
CCS-206ENST00000530961 CC2D2AQ9P2K1 1620 aa29.16■■■□□ 2.26
CCS-206ENST00000530961 SHROOM4Q9ULL8 1493 aa29.11■■■□□ 2.25
CCS-206ENST00000530961 EIF4G1Q04637 1599 aaKnown RBP28.77■■■□□ 2.2
CCS-206ENST00000530961 CUX2O14529 1486 aa28.59■■■□□ 2.17
CCS-206ENST00000530961 TRIM41Q8WV44 630 aa28.26■■■□□ 2.11
CCS-206ENST00000530961 BAZ1AQ9NRL2 1556 aaPredicted RBP28.22■■■□□ 2.11
CCS-206ENST00000530961 ERCC6Q03468 1493 aa28.15■■■□□ 2.1
CCS-206ENST00000530961 SMARCA4P51532 1647 aa28.14■■■□□ 2.09
CCS-206ENST00000530961 MROH2BQ7Z745 1585 aa28.07■■■□□ 2.08
CCS-206ENST00000530961 ATAD2BQ9ULI0 1458 aa28.07■■■□□ 2.08
CCS-206ENST00000530961 NCAPD3P42695 1498 aa28.05■■■□□ 2.08
CCS-206ENST00000530961 SMARCA2P51531 1590 aa28■■■□□ 2.07
CCS-206ENST00000530961 RSF1Q96T23 1441 aaPredicted RBP27.93■■■□□ 2.06
CCS-206ENST00000530961 PEG3Q9GZU2 1588 aa27.91■■■□□ 2.06
CCS-206ENST00000530961 HMGXB3Q12766 1538 aa27.82■■■□□ 2.04
CCS-206ENST00000530961 BAZ1BQ9UIG0 1483 aaKnown RBP27.82■■■□□ 2.04
CCS-206ENST00000530961 WIZO95785 1651 aa27.66■■■□□ 2.02
CCS-206ENST00000530961 TOP2AP11388 1531 aaKnown RBP27.49■■□□□ 1.99
CCS-206ENST00000530961 SUPT5HO00267 1087 aaKnown RBP27.46■■□□□ 1.99
CCS-206ENST00000530961 THOC2Q8NI27 1593 aaKnown RBP27.39■■□□□ 1.97
CCS-206ENST00000530961 NESP48681 1621 aa27.38■■□□□ 1.97
CCS-206ENST00000530961 CADPSQ9ULU8 1353 aa27.28■■□□□ 1.96
CCS-206ENST00000530961 CCDC88BA6NC98 1476 aa27.23■■□□□ 1.95
CCS-206ENST00000530961 LAMC3Q9Y6N6 1575 aa27.15■■□□□ 1.94
CCS-206ENST00000530961 CFTRP13569 1480 aa27.12■■□□□ 1.93
CCS-206ENST00000530961 PDS5BQ9NTI5 1447 aa27.1■■□□□ 1.93
CCS-206ENST00000530961 OSCARQ8IYS5 282 aa27.06■■□□□ 1.92
CCS-206ENST00000530961 AEBP2Q6ZN18 517 aaPredicted RBP27.04■■□□□ 1.92
CCS-206ENST00000530961 KIF21AQ7Z4S6 1674 aa26.94■■□□□ 1.9
CCS-206ENST00000530961 FANCD2Q9BXW9 1451 aa26.88■■□□□ 1.89
CCS-206ENST00000530961 CEP164Q9UPV0 1460 aa26.81■■□□□ 1.88
CCS-206ENST00000530961 MRC2Q9UBG0 1479 aa26.79■■□□□ 1.88
CCS-206ENST00000530961 RIMBP3CA6NJZ7 1639 aa26.76■■□□□ 1.87
CCS-206ENST00000530961 RIMBP3BA6NNM3 1639 aa26.76■■□□□ 1.87
CCS-206ENST00000530961 RIMBP3Q9UFD9 1639 aa26.76■■□□□ 1.87
CCS-206ENST00000530961 WDR62O43379 1518 aa26.74■■□□□ 1.87
CCS-206ENST00000530961 TRHP20396 242 aaPredicted RBP26.71■■□□□ 1.87
CCS-206ENST00000530961 ARHGEF11O15085 1522 aa26.56■■□□□ 1.84
CCS-206ENST00000530961 URB2Q14146 1524 aaKnown RBP26.55■■□□□ 1.84
CCS-206ENST00000530961 ABCC8Q09428 1581 aa26.54■■□□□ 1.84
CCS-206ENST00000530961 PRDM2Q13029 1718 aa26.53■■□□□ 1.84
CCS-206ENST00000530961 CYB5RLQ6IPT4 315 aa26.49■■□□□ 1.83
CCS-206ENST00000530961 TOPBP1Q92547 1522 aa26.44■■□□□ 1.82
CCS-206ENST00000530961 DNMBPQ6XZF7 1577 aa26.4■■□□□ 1.82
CCS-206ENST00000530961 WRNQ14191 1432 aaPredicted RBP eCLIP26.33■■□□□ 1.81
CCS-206ENST00000530961 CUX1P39880 1505 aa26.32■■□□□ 1.8
CCS-206ENST00000530961 IFT140Q96RY7 1462 aa26.28■■□□□ 1.8
CCS-206ENST00000530961 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
CCS-206ENST00000530961 SOGA1O94964 1423 aa26.22■■□□□ 1.79
CCS-206ENST00000530961 FGD5Q6ZNL6 1462 aa26.21■■□□□ 1.79
CCS-206ENST00000530961 ARAP1Q96P48 1450 aa26.18■■□□□ 1.78
CCS-206ENST00000530961 RAD54L2Q9Y4B4 1467 aa26.14■■□□□ 1.78
CCS-206ENST00000530961 TOP2BQ02880 1626 aa26.12■■□□□ 1.77
CCS-206ENST00000530961 SYNJ1O43426 1573 aa26.09■■□□□ 1.77
CCS-206ENST00000530961 ZNF608Q9ULD9 1512 aaPredicted RBP26.08■■□□□ 1.77
CCS-206ENST00000530961 TARBP1Q13395 1621 aaKnown RBP26.05■■□□□ 1.76
CCS-206ENST00000530961 TDRD9Q8NDG6 1382 aaKnown RBP26.05■■□□□ 1.76
CCS-206ENST00000530961 BIVM-ERCC5R4GMW8 1640 aa26.03■■□□□ 1.76
CCS-206ENST00000530961 ILDR1Q86SU0 546 aaPredicted RBP26.03■■□□□ 1.76
CCS-206ENST00000530961 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.761e-16■■■■■ 45.5
CCS-206ENST00000530961 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
CCS-206ENST00000530961 WDR97A6NE52 1622 aa25.91■■□□□ 1.74
CCS-206ENST00000530961 GAPVD1Q14C86 1478 aa25.89■■□□□ 1.73
CCS-206ENST00000530961 EIF4G3O43432 1585 aaKnown RBP25.87■■□□□ 1.73
CCS-206ENST00000530961 GRIN2BQ13224 1484 aa25.86■■□□□ 1.73
CCS-206ENST00000530961 KIF27Q86VH2 1401 aa25.8■■□□□ 1.72
CCS-206ENST00000530961 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
CCS-206ENST00000530961 CHD1O14646 1710 aa25.78■■□□□ 1.72
CCS-206ENST00000530961 FBLN2P98095 1184 aa25.77■■□□□ 1.72
CCS-206ENST00000530961 MAGI1Q96QZ7 1491 aaPredicted RBP25.75■■□□□ 1.71
CCS-206ENST00000530961 ABCA5Q8WWZ7 1642 aa25.74■■□□□ 1.71
CCS-206ENST00000530961 SNAPC4Q5SXM2 1469 aa25.74■■□□□ 1.71
CCS-206ENST00000530961 CHMP7Q8WUX9 453 aaPredicted RBP25.73■■□□□ 1.71
CCS-206ENST00000530961 IGF1RP08069 1367 aa25.69■■□□□ 1.7
CCS-206ENST00000530961 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
CCS-206ENST00000530961 SYNJ2O15056 1496 aa25.65■■□□□ 1.7
CCS-206ENST00000530961 FHAD1B1AJZ9 1412 aa25.63■■□□□ 1.69
CCS-206ENST00000530961 PBRM1Q86U86 1689 aa25.53■■□□□ 1.68
CCS-206ENST00000530961 CARMIL1Q5VZK9 1371 aa25.53■■□□□ 1.68
CCS-206ENST00000530961 RUSC2Q8N2Y8 1516 aa25.53■■□□□ 1.68
CCS-206ENST00000530961 CLASP1Q7Z460 1538 aa25.51■■□□□ 1.67
CCS-206ENST00000530961 ADAMTS12P58397 1594 aa25.5■■□□□ 1.67
CCS-206ENST00000530961 GRIN2AQ12879 1464 aa25.49■■□□□ 1.67
CCS-206ENST00000530961 EEA1Q15075 1411 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms