RNA–Protein interactions for RNA: ENST00000536241.1

CDCA3-206, Transcript of cell division cycle associated 3, humanhuman

TSL 5

Gene CDCA3, Length 1,490 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-206ENST00000536241 NISCHQ9Y2I1 1504 aa26.88■■□□□ 1.89
CDCA3-206ENST00000536241 CCDC180Q9P1Z9 1646 aa23.56■■□□□ 1.36
CDCA3-206ENST00000536241 ABCC9O60706 1549 aa22.75■■□□□ 1.23
CDCA3-206ENST00000536241 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
CDCA3-206ENST00000536241 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
CDCA3-206ENST00000536241 DCAF1Q9Y4B6 1507 aa22.19■■□□□ 1.14
CDCA3-206ENST00000536241 NACADO15069 1562 aa22.1■■□□□ 1.13
CDCA3-206ENST00000536241 MYO15BQ96JP2 1530 aa22.09■■□□□ 1.13
CDCA3-206ENST00000536241 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
CDCA3-206ENST00000536241 SHROOM4Q9ULL8 1493 aa21.7■■□□□ 1.06
CDCA3-206ENST00000536241 SCRIBQ14160 1630 aa21.65■■□□□ 1.06
CDCA3-206ENST00000536241 UNC13AQ9UPW8 1703 aa21.52■■□□□ 1.04
CDCA3-206ENST00000536241 PABPN1Q86U42 306 aaKnown RBP eCLIP21.45■■□□□ 1.02
CDCA3-206ENST00000536241 BICRAQ9NZM4 1560 aa21.35■■□□□ 1.01
CDCA3-206ENST00000536241 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
CDCA3-206ENST00000536241 BAZ1AQ9NRL2 1556 aaPredicted RBP20.77■□□□□ 0.92
CDCA3-206ENST00000536241 MROH2BQ7Z745 1585 aa20.76■□□□□ 0.91
CDCA3-206ENST00000536241 EIF4G1Q04637 1599 aaKnown RBP20.73■□□□□ 0.91
CDCA3-206ENST00000536241 SUPT5HO00267 1087 aaKnown RBP20.72■□□□□ 0.91
CDCA3-206ENST00000536241 SMARCA4P51532 1647 aa20.72■□□□□ 0.91
CDCA3-206ENST00000536241 RSF1Q96T23 1441 aaPredicted RBP20.71■□□□□ 0.91
CDCA3-206ENST00000536241 WIZO95785 1651 aa20.56■□□□□ 0.88
CDCA3-206ENST00000536241 CC2D2AQ9P2K1 1620 aa20.55■□□□□ 0.88
CDCA3-206ENST00000536241 DNAJC5BQ9UF47 199 aa20.54■□□□□ 0.88
CDCA3-206ENST00000536241 ATAD2BQ9ULI0 1458 aa20.53■□□□□ 0.88
CDCA3-206ENST00000536241 SMARCA2P51531 1590 aa20.47■□□□□ 0.87
CDCA3-206ENST00000536241 PEG3Q9GZU2 1588 aa20.47■□□□□ 0.87
CDCA3-206ENST00000536241 NCAPD3P42695 1498 aa20.43■□□□□ 0.86
CDCA3-206ENST00000536241 BAZ1BQ9UIG0 1483 aaKnown RBP20.38■□□□□ 0.85
CDCA3-206ENST00000536241 TOP2AP11388 1531 aaKnown RBP20.31■□□□□ 0.84
CDCA3-206ENST00000536241 HMGXB3Q12766 1538 aa20.3■□□□□ 0.84
CDCA3-206ENST00000536241 CCDC88BA6NC98 1476 aa20.15■□□□□ 0.82
CDCA3-206ENST00000536241 CADPSQ9ULU8 1353 aa19.9■□□□□ 0.78
CDCA3-206ENST00000536241 CFTRP13569 1480 aa19.85■□□□□ 0.77
CDCA3-206ENST00000536241 NESP48681 1621 aa19.84■□□□□ 0.77
CDCA3-206ENST00000536241 LAMC3Q9Y6N6 1575 aa19.76■□□□□ 0.75
CDCA3-206ENST00000536241 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
CDCA3-206ENST00000536241 FANCD2Q9BXW9 1451 aa19.64■□□□□ 0.74
CDCA3-206ENST00000536241 PRDM2Q13029 1718 aa19.63■□□□□ 0.73
CDCA3-206ENST00000536241 CHIC1Q5VXU3 224 aa19.6■□□□□ 0.73
CDCA3-206ENST00000536241 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
CDCA3-206ENST00000536241 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
CDCA3-206ENST00000536241 KIF21AQ7Z4S6 1674 aa19.54■□□□□ 0.72
CDCA3-206ENST00000536241 ERCC6Q03468 1493 aa19.54■□□□□ 0.72
CDCA3-206ENST00000536241 WRNQ14191 1432 aaPredicted RBP eCLIP19.51■□□□□ 0.71
CDCA3-206ENST00000536241 TRIM41Q8WV44 630 aa19.5■□□□□ 0.71
CDCA3-206ENST00000536241 CUX1P39880 1505 aa19.42■□□□□ 0.7
CDCA3-206ENST00000536241 URB2Q14146 1524 aaKnown RBP19.42■□□□□ 0.7
CDCA3-206ENST00000536241 MRC2Q9UBG0 1479 aa19.4■□□□□ 0.7
CDCA3-206ENST00000536241 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
CDCA3-206ENST00000536241 TOPBP1Q92547 1522 aa19.38■□□□□ 0.69
CDCA3-206ENST00000536241 DNMBPQ6XZF7 1577 aa19.36■□□□□ 0.69
CDCA3-206ENST00000536241 TOP2BQ02880 1626 aa19.35■□□□□ 0.69
CDCA3-206ENST00000536241 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
CDCA3-206ENST00000536241 THOC2Q8NI27 1593 aaKnown RBP19.31■□□□□ 0.68
CDCA3-206ENST00000536241 WDR62O43379 1518 aa19.3■□□□□ 0.68
CDCA3-206ENST00000536241 FGD5Q6ZNL6 1462 aa19.29■□□□□ 0.68
CDCA3-206ENST00000536241 POLA1P09884 1462 aaPredicted RBP19.25■□□□□ 0.67
CDCA3-206ENST00000536241 SOGA1O94964 1423 aa19.24■□□□□ 0.67
CDCA3-206ENST00000536241 RAD54L2Q9Y4B4 1467 aa19.22■□□□□ 0.67
CDCA3-206ENST00000536241 CUX2O14529 1486 aa19.19■□□□□ 0.66
CDCA3-206ENST00000536241 FAM9AQ8IZU1 332 aaPredicted RBP19.15■□□□□ 0.66
CDCA3-206ENST00000536241 RUSC2Q8N2Y8 1516 aa19.12■□□□□ 0.65
CDCA3-206ENST00000536241 IFT140Q96RY7 1462 aa19.11■□□□□ 0.65
CDCA3-206ENST00000536241 ABCA10Q8WWZ4 1543 aa19.1■□□□□ 0.65
CDCA3-206ENST00000536241 TDRD9Q8NDG6 1382 aaKnown RBP19.1■□□□□ 0.65
CDCA3-206ENST00000536241 TARBP1Q13395 1621 aaKnown RBP19.1■□□□□ 0.65
CDCA3-206ENST00000536241 KIF27Q86VH2 1401 aa19.06■□□□□ 0.64
CDCA3-206ENST00000536241 ZNF608Q9ULD9 1512 aaPredicted RBP19.04■□□□□ 0.64
CDCA3-206ENST00000536241 AQRO60306 1485 aaKnown RBP eCLIP19.04■□□□□ 0.647e-7■■■■□ 24.1
CDCA3-206ENST00000536241 CSRNP3Q8WYN3 585 aa19.02■□□□□ 0.63
CDCA3-206ENST00000536241 WDR97A6NE52 1622 aa19.01■□□□□ 0.63
CDCA3-206ENST00000536241 GAPVD1Q14C86 1478 aa18.99■□□□□ 0.63
CDCA3-206ENST00000536241 EEA1Q15075 1411 aa18.98■□□□□ 0.63
CDCA3-206ENST00000536241 IGF1RP08069 1367 aa18.97■□□□□ 0.63
CDCA3-206ENST00000536241 ABCA5Q8WWZ7 1642 aa18.94■□□□□ 0.62
CDCA3-206ENST00000536241 EIF4G3O43432 1585 aaKnown RBP18.91■□□□□ 0.62
CDCA3-206ENST00000536241 EHMT2Q96KQ7 1210 aa18.9■□□□□ 0.62
CDCA3-206ENST00000536241 GRIN2BQ13224 1484 aa18.89■□□□□ 0.61
CDCA3-206ENST00000536241 LOC105371045A0A1W2PR82 267 aa18.87■□□□□ 0.61
CDCA3-206ENST00000536241 CARMIL1Q5VZK9 1371 aa18.86■□□□□ 0.61
CDCA3-206ENST00000536241 ERICH3Q5RHP9 1530 aa18.86■□□□□ 0.61
CDCA3-206ENST00000536241 PBRM1Q86U86 1689 aa18.84■□□□□ 0.61
CDCA3-206ENST00000536241 PRXQ9BXM0 1461 aa18.81■□□□□ 0.6
CDCA3-206ENST00000536241 SNAPC4Q5SXM2 1469 aa18.8■□□□□ 0.6
CDCA3-206ENST00000536241 FBLN2P98095 1184 aa18.78■□□□□ 0.6
CDCA3-206ENST00000536241 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.6
CDCA3-206ENST00000536241 CHMP7Q8WUX9 453 aaPredicted RBP18.77■□□□□ 0.59
CDCA3-206ENST00000536241 MAGI1Q96QZ7 1491 aaPredicted RBP18.76■□□□□ 0.59
CDCA3-206ENST00000536241 RAPGEF2Q9Y4G8 1499 aa18.75■□□□□ 0.59
CDCA3-206ENST00000536241 CUL7Q14999 1698 aa18.75■□□□□ 0.59
CDCA3-206ENST00000536241 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
CDCA3-206ENST00000536241 KIF21BO75037 1637 aa18.72■□□□□ 0.59
CDCA3-206ENST00000536241 ADAMTS12P58397 1594 aa18.71■□□□□ 0.59
CDCA3-206ENST00000536241 SYNJ2O15056 1496 aa18.7■□□□□ 0.58
CDCA3-206ENST00000536241 GOLGA3Q08378 1498 aa18.69■□□□□ 0.58
CDCA3-206ENST00000536241 GRIN2AQ12879 1464 aa18.64■□□□□ 0.57
CDCA3-206ENST00000536241 TNIKQ9UKE5 1360 aa18.6■□□□□ 0.57
CDCA3-206ENST00000536241 CHD1O14646 1710 aa18.59■□□□□ 0.57
CDCA3-206ENST00000536241 RANGAP1P46060 587 aaPredicted RBP18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms