RNA–Protein interactions for RNA: ENST00000316099.8

HNF4A-201, Transcript of hepatocyte nuclear factor 4 alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HNF4A, Length 6,445 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4A-201ENST00000316099 NISCHQ9Y2I1 1504 aa21.24■□□□□ 0.99
HNF4A-201ENST00000316099 DCAF8L2P0C7V8 631 aa19.03■□□□□ 0.64
HNF4A-201ENST00000316099 SHROOM4Q9ULL8 1493 aa18.56■□□□□ 0.56
HNF4A-201ENST00000316099 SUPT5HO00267 1087 aaKnown RBP18.21■□□□□ 0.51
HNF4A-201ENST00000316099 CCDC180Q9P1Z9 1646 aa18.1■□□□□ 0.49
HNF4A-201ENST00000316099 ZCCHC6Q5VYS8 1495 aaKnown RBP17.77■□□□□ 0.43
HNF4A-201ENST00000316099 ABCC9O60706 1549 aa17.71■□□□□ 0.43
HNF4A-201ENST00000316099 EHMT2Q96KQ7 1210 aa17.35■□□□□ 0.37
HNF4A-201ENST00000316099 SCRIBQ14160 1630 aa17.29■□□□□ 0.36
HNF4A-201ENST00000316099 DCAF1Q9Y4B6 1507 aa17.19■□□□□ 0.34
HNF4A-201ENST00000316099 PELP1Q8IZL8 1130 aaKnown RBP17.08■□□□□ 0.32
HNF4A-201ENST00000316099 NACADO15069 1562 aa17.06■□□□□ 0.32
HNF4A-201ENST00000316099 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.325e-6■■■■□ 20.9
HNF4A-201ENST00000316099 RB1CC1Q8TDY2 1594 aa17.02■□□□□ 0.31
HNF4A-201ENST00000316099 TRIM41Q8WV44 630 aa16.97■□□□□ 0.31
HNF4A-201ENST00000316099 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
HNF4A-201ENST00000316099 CHIC1Q5VXU3 224 aa16.96■□□□□ 0.31
HNF4A-201ENST00000316099 MYO15BQ96JP2 1530 aa16.81■□□□□ 0.28
HNF4A-201ENST00000316099 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
HNF4A-201ENST00000316099 TTBK1Q5TCY1 1321 aaPredicted RBP16.64■□□□□ 0.25
HNF4A-201ENST00000316099 LOC105371045A0A1W2PR82 267 aa16.62■□□□□ 0.25
HNF4A-201ENST00000316099 MYT1Q01538 1121 aa16.62■□□□□ 0.25
HNF4A-201ENST00000316099 CECR2Q9BXF3 1484 aa16.6■□□□□ 0.25
HNF4A-201ENST00000316099 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
HNF4A-201ENST00000316099 RANGAP1P46060 587 aaPredicted RBP16.55■□□□□ 0.24
HNF4A-201ENST00000316099 PCGF6Q9BYE7 350 aa16.55■□□□□ 0.24
HNF4A-201ENST00000316099 CENPBP07199 599 aaPredicted RBP16.53■□□□□ 0.24
HNF4A-201ENST00000316099 BAZ1AQ9NRL2 1556 aaPredicted RBP16.48■□□□□ 0.23
HNF4A-201ENST00000316099 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
HNF4A-201ENST00000316099 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
HNF4A-201ENST00000316099 APLP2Q06481 763 aa16.4■□□□□ 0.22
HNF4A-201ENST00000316099 WIZO95785 1651 aa16.38■□□□□ 0.21
HNF4A-201ENST00000316099 ERICH6Q7L0X2 663 aa16.28■□□□□ 0.2
HNF4A-201ENST00000316099 CCER1Q8TC90 406 aaPredicted RBP16.26■□□□□ 0.19
HNF4A-201ENST00000316099 PPARGC1BQ86YN6 1023 aaKnown RBP16.25■□□□□ 0.19
HNF4A-201ENST00000316099 SMARCA4P51532 1647 aa16.25■□□□□ 0.19
HNF4A-201ENST00000316099 BAZ1BQ9UIG0 1483 aaKnown RBP16.24■□□□□ 0.19
HNF4A-201ENST00000316099 ATP1B4Q9UN42 357 aaPredicted RBP16.2■□□□□ 0.18
HNF4A-201ENST00000316099 TOP2AP11388 1531 aaKnown RBP16.17■□□□□ 0.18
HNF4A-201ENST00000316099 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
HNF4A-201ENST00000316099 TRIM26Q12899 539 aaPredicted RBP16.15■□□□□ 0.18
HNF4A-201ENST00000316099 UNC13AQ9UPW8 1703 aa16.14■□□□□ 0.18
HNF4A-201ENST00000316099 SMARCA2P51531 1590 aa16.09■□□□□ 0.17
HNF4A-201ENST00000316099 HRCP23327 699 aa16.06■□□□□ 0.16
HNF4A-201ENST00000316099 CSRNP3Q8WYN3 585 aa16.06■□□□□ 0.16
HNF4A-201ENST00000316099 BICRAQ9NZM4 1560 aa16.02■□□□□ 0.16
HNF4A-201ENST00000316099 ATAD2BQ9ULI0 1458 aa16.01■□□□□ 0.15
HNF4A-201ENST00000316099 ABCC8Q09428 1581 aa16.01■□□□□ 0.15
HNF4A-201ENST00000316099 WRNQ14191 1432 aaPredicted RBP eCLIP15.99■□□□□ 0.15
HNF4A-201ENST00000316099 NEFLP07196 543 aa15.97■□□□□ 0.15
HNF4A-201ENST00000316099 YTHDC1Q96MU7 727 aaKnown RBP15.9■□□□□ 0.14
HNF4A-201ENST00000316099 EIF4G1Q04637 1599 aaKnown RBP15.86■□□□□ 0.13
HNF4A-201ENST00000316099 SOGA1O94964 1423 aa15.83■□□□□ 0.12
HNF4A-201ENST00000316099 EEA1Q15075 1411 aa15.82■□□□□ 0.12
HNF4A-201ENST00000316099 GOLGA3Q08378 1498 aa15.75■□□□□ 0.11
HNF4A-201ENST00000316099 HNRNPUL2Q1KMD3 747 aaKnown RBP15.73■□□□□ 0.11
HNF4A-201ENST00000316099 NCAPD3P42695 1498 aa15.72■□□□□ 0.11
HNF4A-201ENST00000316099 CEP162Q5TB80 1403 aa15.71■□□□□ 0.11
HNF4A-201ENST00000316099 CEP164Q9UPV0 1460 aa15.68■□□□□ 0.1
HNF4A-201ENST00000316099 ITGAEP38570 1179 aa15.67■□□□□ 0.1
HNF4A-201ENST00000316099 TNIKQ9UKE5 1360 aa15.67■□□□□ 0.1
HNF4A-201ENST00000316099 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
HNF4A-201ENST00000316099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.66■□□□□ 0.1
HNF4A-201ENST00000316099 P3H3Q8IVL6 736 aa15.66■□□□□ 0.1
HNF4A-201ENST00000316099 PEG3Q9GZU2 1588 aa15.65■□□□□ 0.1
HNF4A-201ENST00000316099 CADPSQ9ULU8 1353 aa15.64■□□□□ 0.09
HNF4A-201ENST00000316099 CLIP1P30622 1438 aa15.64■□□□□ 0.09
HNF4A-201ENST00000316099 CC2D2AQ9P2K1 1620 aa15.63■□□□□ 0.09
HNF4A-201ENST00000316099 RUSC2Q8N2Y8 1516 aa15.63■□□□□ 0.09
HNF4A-201ENST00000316099 HMGXB3Q12766 1538 aa15.62■□□□□ 0.09
HNF4A-201ENST00000316099 CUX2O14529 1486 aa15.57■□□□□ 0.08
HNF4A-201ENST00000316099 FBLN2P98095 1184 aa15.56■□□□□ 0.08
HNF4A-201ENST00000316099 SYNJ1O43426 1573 aa15.54■□□□□ 0.08
HNF4A-201ENST00000316099 MYT1LQ9UL68 1186 aa15.52■□□□□ 0.07
HNF4A-201ENST00000316099 FANCD2Q9BXW9 1451 aa15.5■□□□□ 0.07
HNF4A-201ENST00000316099 FAM50AQ14320 339 aaKnown RBP15.49■□□□□ 0.07
HNF4A-201ENST00000316099 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
HNF4A-201ENST00000316099 CFTRP13569 1480 aa15.48■□□□□ 0.07
HNF4A-201ENST00000316099 RAPGEF2Q9Y4G8 1499 aa15.45■□□□□ 0.06
HNF4A-201ENST00000316099 CARMIL1Q5VZK9 1371 aa15.45■□□□□ 0.06
HNF4A-201ENST00000316099 ERCC6Q03468 1493 aa15.45■□□□□ 0.06
HNF4A-201ENST00000316099 DIEXFQ68CQ4 756 aaKnown RBP15.44■□□□□ 0.06
HNF4A-201ENST00000316099 DAXXQ9UER7 740 aaPredicted RBP15.44■□□□□ 0.06
HNF4A-201ENST00000316099 TOP2BQ02880 1626 aa15.41■□□□□ 0.06
HNF4A-201ENST00000316099 ARID3CA6NKF2 412 aa15.4■□□□□ 0.06
HNF4A-201ENST00000316099 NESP48681 1621 aa15.38■□□□□ 0.05
HNF4A-201ENST00000316099 FGD5Q6ZNL6 1462 aa15.38■□□□□ 0.05
HNF4A-201ENST00000316099 CUX1P39880 1505 aa15.38■□□□□ 0.05
HNF4A-201ENST00000316099 TDRD9Q8NDG6 1382 aaKnown RBP15.34■□□□□ 0.05
HNF4A-201ENST00000316099 CNGB1Q14028 1251 aaPredicted RBP15.34■□□□□ 0.05
HNF4A-201ENST00000316099 VPS8Q8N3P4 1428 aa15.33■□□□□ 0.04
HNF4A-201ENST00000316099 POLR3GLQ9BT43 218 aa15.32■□□□□ 0.04
HNF4A-201ENST00000316099 CHMP7Q8WUX9 453 aaPredicted RBP15.31■□□□□ 0.04
HNF4A-201ENST00000316099 KIF21BO75037 1637 aa15.31■□□□□ 0.04
HNF4A-201ENST00000316099 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
HNF4A-201ENST00000316099 RTL5Q5HYW3 569 aaPredicted RBP15.31■□□□□ 0.04
HNF4A-201ENST00000316099 GTF3C3Q9Y5Q9 886 aa15.29■□□□□ 0.04
HNF4A-201ENST00000316099 DNAJC5BQ9UF47 199 aa15.25■□□□□ 0.03
HNF4A-201ENST00000316099 IGF1RP08069 1367 aa15.25■□□□□ 0.03
HNF4A-201ENST00000316099 BIVM-ERCC5R4GMW8 1640 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms