Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DMBP28068 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DMBP28068 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HLA-DMBP28068 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HLA-DMBP28068 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DMBP28068 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HLA-DMBP28068 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.55■□□□□ 0.88
HLA-DMBP28068 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HLA-DMBP28068 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DMBP28068 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HLA-DMBP28068 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DMBP28068 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DMBP28068 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DMBP28068 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.5■□□□□ 0.87
HLA-DMBP28068 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
HLA-DMBP28068 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.49■□□□□ 0.87
HLA-DMBP28068 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HLA-DMBP28068 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DMBP28068 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DMBP28068 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HLA-DMBP28068 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC20.46■□□□□ 0.87
HLA-DMBP28068 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.45■□□□□ 0.86
HLA-DMBP28068 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DMBP28068 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DMBP28068 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DMBP28068 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DMBP28068 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DMBP28068 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DMBP28068 AL161658.1-201ENST00000623641 1967 ntBASIC20.41■□□□□ 0.86
HLA-DMBP28068 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
HLA-DMBP28068 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HLA-DMBP28068 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
HLA-DMBP28068 ABCB10P3-201ENST00000561950 2166 ntBASIC20.4■□□□□ 0.86
HLA-DMBP28068 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
HLA-DMBP28068 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.38■□□□□ 0.85
HLA-DMBP28068 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.38■□□□□ 0.85
HLA-DMBP28068 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HLA-DMBP28068 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HLA-DMBP28068 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HLA-DMBP28068 AC139426.1-201ENST00000568218 2529 ntBASIC20.36■□□□□ 0.85
HLA-DMBP28068 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
HLA-DMBP28068 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HLA-DMBP28068 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HLA-DMBP28068 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.35■□□□□ 0.85
HLA-DMBP28068 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HLA-DMBP28068 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.34■□□□□ 0.85
HLA-DMBP28068 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HLA-DMBP28068 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HLA-DMBP28068 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DMBP28068 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DMBP28068 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DMBP28068 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HLA-DMBP28068 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DMBP28068 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.29■□□□□ 0.84
HLA-DMBP28068 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DMBP28068 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.28■□□□□ 0.84
HLA-DMBP28068 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC20.28■□□□□ 0.84
HLA-DMBP28068 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DMBP28068 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DMBP28068 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.83
HLA-DMBP28068 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 ST7-AS1-201ENST00000456775 1889 ntBASIC20.25■□□□□ 0.83
HLA-DMBP28068 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.25■□□□□ 0.83
HLA-DMBP28068 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HLA-DMBP28068 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HLA-DMBP28068 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
HLA-DMBP28068 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DMBP28068 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HLA-DMBP28068 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HLA-DMBP28068 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms