RNA–Protein interactions for RNA: ENST00000378292.7

TPM2-203, Transcript of tropomyosin 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TPM2, Length 2,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM2-203ENST00000378292 NISCHQ9Y2I1 1504 aa58.18■■■■■ 6.9
TPM2-203ENST00000378292 CCDC180Q9P1Z9 1646 aa50.15■■■■■ 5.62
TPM2-203ENST00000378292 ZCCHC6Q5VYS8 1495 aaKnown RBP49.04■■■■■ 5.44
TPM2-203ENST00000378292 SHROOM4Q9ULL8 1493 aa48.4■■■■■ 5.34
TPM2-203ENST00000378292 DCAF8L2P0C7V8 631 aa48.06■■■■■ 5.28
TPM2-203ENST00000378292 DCAF1Q9Y4B6 1507 aa47.96■■■■■ 5.27
TPM2-203ENST00000378292 SUPT5HO00267 1087 aaKnown RBP47.01■■■■■ 5.12
TPM2-203ENST00000378292 MYO15BQ96JP2 1530 aa47.01■■■■■ 5.12
TPM2-203ENST00000378292 ABCC9O60706 1549 aa46.9■■■■■ 5.1
TPM2-203ENST00000378292 NACADO15069 1562 aa46.54■■■■■ 5.04
TPM2-203ENST00000378292 SCRIBQ14160 1630 aa46.49■■■■■ 5.03
TPM2-203ENST00000378292 RB1CC1Q8TDY2 1594 aa45.96■■■■■ 4.95
TPM2-203ENST00000378292 RSF1Q96T23 1441 aaPredicted RBP45.55■■■■■ 4.88
TPM2-203ENST00000378292 CHIC1Q5VXU3 224 aa45.38■■■■■ 4.85
TPM2-203ENST00000378292 CECR2Q9BXF3 1484 aa45.26■■■■■ 4.84
TPM2-203ENST00000378292 UNC13AQ9UPW8 1703 aa45.15■■■■■ 4.82
TPM2-203ENST00000378292 MROH2BQ7Z745 1585 aa45.06■■■■■ 4.8
TPM2-203ENST00000378292 BAZ1AQ9NRL2 1556 aaPredicted RBP44.81■■■■■ 4.76
TPM2-203ENST00000378292 WIZO95785 1651 aa44.75■■■■■ 4.75
TPM2-203ENST00000378292 BICRAQ9NZM4 1560 aa44.64■■■■■ 4.74
TPM2-203ENST00000378292 SMARCA4P51532 1647 aa44.53■■■■■ 4.72
TPM2-203ENST00000378292 PABPN1Q86U42 306 aaKnown RBP eCLIP44.51■■■■■ 4.724e-7■■■□□ 16.3
TPM2-203ENST00000378292 TOP2AP11388 1531 aaKnown RBP44.19■■■■■ 4.67
TPM2-203ENST00000378292 TRIM41Q8WV44 630 aa44.03■■■■■ 4.64
TPM2-203ENST00000378292 CCDC88BA6NC98 1476 aa43.86■■■■■ 4.61
TPM2-203ENST00000378292 SMARCA2P51531 1590 aa43.86■■■■■ 4.61
TPM2-203ENST00000378292 PEG3Q9GZU2 1588 aa43.86■■■■■ 4.61
TPM2-203ENST00000378292 EIF4G1Q04637 1599 aaKnown RBP43.84■■■■■ 4.61
TPM2-203ENST00000378292 LOC105371045A0A1W2PR82 267 aa43.81■■■■■ 4.6
TPM2-203ENST00000378292 ATAD2BQ9ULI0 1458 aa43.59■■■■■ 4.57
TPM2-203ENST00000378292 BAZ1BQ9UIG0 1483 aaKnown RBP43.41■■■■■ 4.54
TPM2-203ENST00000378292 FAM9AQ8IZU1 332 aaPredicted RBP43.4■■■■■ 4.54
TPM2-203ENST00000378292 ABCC8Q09428 1581 aa43.31■■■■■ 4.52
TPM2-203ENST00000378292 NCAPD3P42695 1498 aa43.01■■■■■ 4.48
TPM2-203ENST00000378292 HMGXB3Q12766 1538 aa42.98■■■■■ 4.47
TPM2-203ENST00000378292 EHMT2Q96KQ7 1210 aa42.87■■■■■ 4.45
TPM2-203ENST00000378292 WRNQ14191 1432 aaPredicted RBP eCLIP42.83■■■■■ 4.45
TPM2-203ENST00000378292 PCGF6Q9BYE7 350 aa42.76■■■■■ 4.44
TPM2-203ENST00000378292 SOGA1O94964 1423 aa42.7■■■■■ 4.43
TPM2-203ENST00000378292 SYNJ1O43426 1573 aa42.64■■■■■ 4.42
TPM2-203ENST00000378292 EEA1Q15075 1411 aa42.59■■■■■ 4.41
TPM2-203ENST00000378292 RUSC2Q8N2Y8 1516 aa42.5■■■■■ 4.39
TPM2-203ENST00000378292 CSRNP3Q8WYN3 585 aa42.42■■■■■ 4.38
TPM2-203ENST00000378292 TRIM26Q12899 539 aaPredicted RBP42.4■■■■■ 4.38
TPM2-203ENST00000378292 CC2D2AQ9P2K1 1620 aa42.38■■■■■ 4.37
TPM2-203ENST00000378292 CFTRP13569 1480 aa42.34■■■■■ 4.37
TPM2-203ENST00000378292 TOP2BQ02880 1626 aa42.32■■■■■ 4.37
TPM2-203ENST00000378292 BIVM-ERCC5R4GMW8 1640 aa42.22■■■■■ 4.35
TPM2-203ENST00000378292 HRCP23327 699 aa42.18■■■■■ 4.34
TPM2-203ENST00000378292 TNIKQ9UKE5 1360 aa42.18■■■■■ 4.34
TPM2-203ENST00000378292 GOLGA3Q08378 1498 aa42.13■■■■■ 4.33
TPM2-203ENST00000378292 CEP162Q5TB80 1403 aa42.08■■■■■ 4.33
TPM2-203ENST00000378292 PRDM2Q13029 1718 aa42.07■■■■■ 4.33
TPM2-203ENST00000378292 CUX1P39880 1505 aa42.06■■■■■ 4.32
TPM2-203ENST00000378292 UBTFP17480 764 aaKnown RBP42.05■■■■■ 4.32
TPM2-203ENST00000378292 CADPSQ9ULU8 1353 aa42.03■■■■■ 4.32
TPM2-203ENST00000378292 CEP164Q9UPV0 1460 aa42.03■■■■■ 4.32
TPM2-203ENST00000378292 KIF21BO75037 1637 aa42.02■■■■■ 4.32
TPM2-203ENST00000378292 PPARGC1BQ86YN6 1023 aaKnown RBP41.76■■■■■ 4.28
TPM2-203ENST00000378292 RAPGEF2Q9Y4G8 1499 aa41.75■■■■■ 4.27
TPM2-203ENST00000378292 KIF27Q86VH2 1401 aa41.64■■■■■ 4.26
TPM2-203ENST00000378292 PRXQ9BXM0 1461 aa41.59■■■■■ 4.25
TPM2-203ENST00000378292 FANCD2Q9BXW9 1451 aa41.59■■■■■ 4.25
TPM2-203ENST00000378292 ERICH3Q5RHP9 1530 aa41.56■■■■■ 4.24
TPM2-203ENST00000378292 CLIP1P30622 1438 aa41.54■■■■■ 4.24
TPM2-203ENST00000378292 NESP48681 1621 aa41.48■■■■■ 4.23
TPM2-203ENST00000378292 FGD5Q6ZNL6 1462 aa41.46■■■■■ 4.23
TPM2-203ENST00000378292 CUX2O14529 1486 aa41.38■■■■■ 4.22
TPM2-203ENST00000378292 LAMC3Q9Y6N6 1575 aa41.36■■■■■ 4.21
TPM2-203ENST00000378292 DNMBPQ6XZF7 1577 aa41.31■■■■■ 4.2
TPM2-203ENST00000378292 VPS8Q8N3P4 1428 aa41.27■■■■■ 4.2
TPM2-203ENST00000378292 DNAJC5BQ9UF47 199 aa41.27■■■■■ 4.2
TPM2-203ENST00000378292 TTBK1Q5TCY1 1321 aaPredicted RBP41.26■■■■■ 4.2
TPM2-203ENST00000378292 RANGAP1P46060 587 aaPredicted RBP41.24■■■■■ 4.19
TPM2-203ENST00000378292 TOPBP1Q92547 1522 aa41.23■■■■■ 4.19
TPM2-203ENST00000378292 IGF1RP08069 1367 aa41.23■■■■■ 4.19
TPM2-203ENST00000378292 POLA1P09884 1462 aaPredicted RBP41.12■■■■■ 4.17
TPM2-203ENST00000378292 ZEB1P37275 1124 aaPredicted RBP41.08■■■■■ 4.17
TPM2-203ENST00000378292 PDS5BQ9NTI5 1447 aa41.07■■■■■ 4.16
TPM2-203ENST00000378292 RAD54L2Q9Y4B4 1467 aa41.07■■■■■ 4.16
TPM2-203ENST00000378292 ABCA10Q8WWZ4 1543 aa41.05■■■■■ 4.16
TPM2-203ENST00000378292 URB2Q14146 1524 aaKnown RBP41.03■■■■■ 4.16
TPM2-203ENST00000378292 CARMIL1Q5VZK9 1371 aa41.03■■■■■ 4.16
TPM2-203ENST00000378292 ARAP1Q96P48 1450 aa41■■■■■ 4.15
TPM2-203ENST00000378292 APLP2Q06481 763 aa40.95■■■■■ 4.15
TPM2-203ENST00000378292 KIF21AQ7Z4S6 1674 aa40.89■■■■■ 4.14
TPM2-203ENST00000378292 ARHGAP35Q9NRY4 1499 aa40.84■■■■■ 4.13
TPM2-203ENST00000378292 WDR97A6NE52 1622 aa40.79■■■■■ 4.12
TPM2-203ENST00000378292 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.73■■■■■ 4.11
TPM2-203ENST00000378292 CUL7Q14999 1698 aa40.71■■■■■ 4.11
TPM2-203ENST00000378292 CCER1Q8TC90 406 aaPredicted RBP40.64■■■■■ 4.1
TPM2-203ENST00000378292 ABCA5Q8WWZ7 1642 aa40.63■■■■■ 4.09
TPM2-203ENST00000378292 TDRD9Q8NDG6 1382 aaKnown RBP40.61■■■■■ 4.09
TPM2-203ENST00000378292 GAPVD1Q14C86 1478 aa40.55■■■■■ 4.08
TPM2-203ENST00000378292 TARBP1Q13395 1621 aaKnown RBP40.51■■■■■ 4.08
TPM2-203ENST00000378292 KANK4Q5T7N3 995 aaPredicted RBP40.5■■■■■ 4.07
TPM2-203ENST00000378292 MRC2Q9UBG0 1479 aa40.49■■■■■ 4.07
TPM2-203ENST00000378292 CTTNBP2Q8WZ74 1663 aa40.42■■■■■ 4.06
TPM2-203ENST00000378292 HNRNPUL2Q1KMD3 747 aaKnown RBP40.4■■■■■ 4.06
TPM2-203ENST00000378292 EFCAB5A4FU69 1503 aa40.32■■■■■ 4.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms