Protein–RNA interactions for Protein: A6NKQ9

CGB1, Choriogonadotropin subunit beta variant 1, humanhuman

Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CGB1A6NKQ9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CGB1A6NKQ9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.66■■□□□ 1.06
CGB1A6NKQ9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.65■■□□□ 1.06
CGB1A6NKQ9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CGB1A6NKQ9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CGB1A6NKQ9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CGB1A6NKQ9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.64■■□□□ 1.05
CGB1A6NKQ9 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CGB1A6NKQ9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CGB1A6NKQ9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CGB1A6NKQ9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC21.63■■□□□ 1.05
CGB1A6NKQ9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CGB1A6NKQ9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.62■■□□□ 1.05
CGB1A6NKQ9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CGB1A6NKQ9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CGB1A6NKQ9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.59■■□□□ 1.05
CGB1A6NKQ9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.59■■□□□ 1.05
CGB1A6NKQ9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.04
CGB1A6NKQ9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.56■■□□□ 1.04
CGB1A6NKQ9 ABCB10P1-201ENST00000614297 2181 ntBASIC21.54■■□□□ 1.04
CGB1A6NKQ9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
CGB1A6NKQ9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
CGB1A6NKQ9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CGB1A6NKQ9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CGB1A6NKQ9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.52■■□□□ 1.04
CGB1A6NKQ9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CGB1A6NKQ9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CGB1A6NKQ9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.51■■□□□ 1.03
CGB1A6NKQ9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.49■■□□□ 1.03
CGB1A6NKQ9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CGB1A6NKQ9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CGB1A6NKQ9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.47■■□□□ 1.03
CGB1A6NKQ9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CGB1A6NKQ9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CGB1A6NKQ9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CGB1A6NKQ9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CGB1A6NKQ9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CGB1A6NKQ9 AL161658.1-201ENST00000623641 1967 ntBASIC21.46■■□□□ 1.03
CGB1A6NKQ9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.46■■□□□ 1.03
CGB1A6NKQ9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CGB1A6NKQ9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CGB1A6NKQ9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CGB1A6NKQ9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CGB1A6NKQ9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CGB1A6NKQ9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CGB1A6NKQ9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CGB1A6NKQ9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CGB1A6NKQ9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.41■■□□□ 1.02
CGB1A6NKQ9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CGB1A6NKQ9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CGB1A6NKQ9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CGB1A6NKQ9 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CGB1A6NKQ9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CGB1A6NKQ9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CGB1A6NKQ9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
CGB1A6NKQ9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
CGB1A6NKQ9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CGB1A6NKQ9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CGB1A6NKQ9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CGB1A6NKQ9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CGB1A6NKQ9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.38■■□□□ 1.01
CGB1A6NKQ9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CGB1A6NKQ9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CGB1A6NKQ9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CGB1A6NKQ9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.36■■□□□ 1.01
CGB1A6NKQ9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CGB1A6NKQ9 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.34■■□□□ 1.01
CGB1A6NKQ9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.34■■□□□ 1.01
CGB1A6NKQ9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
CGB1A6NKQ9 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CGB1A6NKQ9 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CGB1A6NKQ9 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CGB1A6NKQ9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.33■■□□□ 1.01
CGB1A6NKQ9 AL133380.1-201ENST00000506013 324 ntBASIC21.33■■□□□ 1.01
CGB1A6NKQ9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
CGB1A6NKQ9 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.33■■□□□ 1
CGB1A6NKQ9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.32■■□□□ 1
CGB1A6NKQ9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CGB1A6NKQ9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.32■■□□□ 1
CGB1A6NKQ9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CGB1A6NKQ9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CGB1A6NKQ9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.31■■□□□ 1
CGB1A6NKQ9 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CGB1A6NKQ9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CGB1A6NKQ9 ST7-AS1-201ENST00000456775 1889 ntBASIC21.3■■□□□ 1
CGB1A6NKQ9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.29■■□□□ 1
CGB1A6NKQ9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.29■■□□□ 1
CGB1A6NKQ9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CGB1A6NKQ9 WASH5P-204ENST00000632292 975 ntBASIC21.29■■□□□ 1
CGB1A6NKQ9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC21.29■■□□□ 1
CGB1A6NKQ9 ABCB10P3-201ENST00000561950 2166 ntBASIC21.29■■□□□ 1
CGB1A6NKQ9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CGB1A6NKQ9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC21.28■■□□□ 1
CGB1A6NKQ9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CGB1A6NKQ9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms