RNA–Protein interactions for RNA: ENST00000409402.8

SPIRE1-202, Transcript of spire type actin nucleation factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPIRE1, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIRE1-202ENST00000409402 DCAF8L2P0C7V8 631 aa44.29■■■■■ 4.68
SPIRE1-202ENST00000409402 NISCHQ9Y2I1 1504 aa42.01■■■■■ 4.32
SPIRE1-202ENST00000409402 SUPT5HO00267 1087 aaKnown RBP41.47■■■■■ 4.23
SPIRE1-202ENST00000409402 SHROOM4Q9ULL8 1493 aa40.84■■■■■ 4.13
SPIRE1-202ENST00000409402 EHMT2Q96KQ7 1210 aa40.14■■■■■ 4.02
SPIRE1-202ENST00000409402 APLP2Q06481 763 aa39.74■■■■□ 3.95
SPIRE1-202ENST00000409402 FAM9AQ8IZU1 332 aaPredicted RBP39.61■■■■□ 3.93
SPIRE1-202ENST00000409402 PELP1Q8IZL8 1130 aaKnown RBP38.84■■■■□ 3.81
SPIRE1-202ENST00000409402 TTBK1Q5TCY1 1321 aaPredicted RBP38.72■■■■□ 3.79
SPIRE1-202ENST00000409402 RANGAP1P46060 587 aaPredicted RBP38.66■■■■□ 3.78
SPIRE1-202ENST00000409402 TRIM41Q8WV44 630 aa38.53■■■■□ 3.76
SPIRE1-202ENST00000409402 ATP1B4Q9UN42 357 aaPredicted RBP38.49■■■■□ 3.75
SPIRE1-202ENST00000409402 UBTFP17480 764 aaKnown RBP38.19■■■■□ 3.7
SPIRE1-202ENST00000409402 PCGF6Q9BYE7 350 aa38.16■■■■□ 3.7
SPIRE1-202ENST00000409402 CCER1Q8TC90 406 aaPredicted RBP37.81■■■■□ 3.64
SPIRE1-202ENST00000409402 ZEB1P37275 1124 aaPredicted RBP37.7■■■■□ 3.62
SPIRE1-202ENST00000409402 CENPBP07199 599 aaPredicted RBP37.4■■■■□ 3.58
SPIRE1-202ENST00000409402 MYT1LQ9UL68 1186 aa37.32■■■■□ 3.56
SPIRE1-202ENST00000409402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.3■■■■□ 3.56
SPIRE1-202ENST00000409402 HNRNPUL2Q1KMD3 747 aaKnown RBP37.3■■■■□ 3.56
SPIRE1-202ENST00000409402 ERICH6Q7L0X2 663 aa37.12■■■■□ 3.53
SPIRE1-202ENST00000409402 PPARGC1BQ86YN6 1023 aaKnown RBP37.08■■■■□ 3.53
SPIRE1-202ENST00000409402 NEFLP07196 543 aa36.92■■■■□ 3.5
SPIRE1-202ENST00000409402 ITGAEP38570 1179 aa36.88■■■■□ 3.49
SPIRE1-202ENST00000409402 ABCC9O60706 1549 aa36.79■■■■□ 3.48
SPIRE1-202ENST00000409402 TRIM26Q12899 539 aaPredicted RBP36.67■■■■□ 3.46
SPIRE1-202ENST00000409402 YTHDC1Q96MU7 727 aaKnown RBP36.67■■■■□ 3.46
SPIRE1-202ENST00000409402 PABPN1Q86U42 306 aaKnown RBP eCLIP36.67■■■■□ 3.46
SPIRE1-202ENST00000409402 POLR3GLQ9BT43 218 aa36.6■■■■□ 3.45
SPIRE1-202ENST00000409402 CHIC1Q5VXU3 224 aa36.45■■■■□ 3.43
SPIRE1-202ENST00000409402 LOC105371045A0A1W2PR82 267 aa36.38■■■■□ 3.41
SPIRE1-202ENST00000409402 SLC4A1APQ9BWU0 796 aaKnown RBP36.16■■■■□ 3.38
SPIRE1-202ENST00000409402 CNGB1Q14028 1251 aaPredicted RBP36.06■■■■□ 3.36
SPIRE1-202ENST00000409402 FAM50AQ14320 339 aaKnown RBP36.06■■■■□ 3.36
SPIRE1-202ENST00000409402 FBLN2P98095 1184 aa36■■■■□ 3.35
SPIRE1-202ENST00000409402 TRIM52Q96A61 297 aa35.91■■■■□ 3.34
SPIRE1-202ENST00000409402 DAXXQ9UER7 740 aaPredicted RBP35.9■■■■□ 3.34
SPIRE1-202ENST00000409402 HRCP23327 699 aa35.88■■■■□ 3.33
SPIRE1-202ENST00000409402 NEUROD1Q13562 356 aa35.51■■■■□ 3.27
SPIRE1-202ENST00000409402 ZNF326Q5BKZ1 582 aaKnown RBP35.41■■■■□ 3.26
SPIRE1-202ENST00000409402 P3H3Q8IVL6 736 aa35.31■■■■□ 3.24
SPIRE1-202ENST00000409402 CLSPNQ9HAW4 1339 aa35.31■■■■□ 3.24
SPIRE1-202ENST00000409402 ARID3CA6NKF2 412 aa35.29■■■■□ 3.24
SPIRE1-202ENST00000409402 BCANQ96GW7 911 aa35.27■■■■□ 3.24
SPIRE1-202ENST00000409402 DIEXFQ68CQ4 756 aaKnown RBP35.22■■■■□ 3.23
SPIRE1-202ENST00000409402 CDK11AQ9UQ88 783 aaPredicted RBP35.17■■■■□ 3.22
SPIRE1-202ENST00000409402 CSRNP3Q8WYN3 585 aa35.17■■■■□ 3.22
SPIRE1-202ENST00000409402 SCRIBQ14160 1630 aa35.16■■■■□ 3.22
SPIRE1-202ENST00000409402 ZNF777Q9ULD5 760 aaPredicted RBP35.13■■■■□ 3.21
SPIRE1-202ENST00000409402 ESF1Q9H501 851 aaKnown RBP35.05■■■■□ 3.2
SPIRE1-202ENST00000409402 ZNF316A6NFI3 1004 aaPredicted RBP35.04■■■■□ 3.2
SPIRE1-202ENST00000409402 ANP32CO43423 234 aa35.02■■■■□ 3.2
SPIRE1-202ENST00000409402 NPM1P06748 294 aaKnown RBP eCLIP34.96■■■■□ 3.19
SPIRE1-202ENST00000409402 MYT1Q01538 1121 aa34.95■■■■□ 3.19
SPIRE1-202ENST00000409402 ZBTB47Q9UFB7 747 aaPredicted RBP34.94■■■■□ 3.18
SPIRE1-202ENST00000409402 SLC24A1O60721 1099 aa34.93■■■■□ 3.18
SPIRE1-202ENST00000409402 NEFMP07197 916 aa34.92■■■■□ 3.18
SPIRE1-202ENST00000409402 STAG3Q9UJ98 1225 aa34.75■■■■□ 3.15
SPIRE1-202ENST00000409402 CANXP27824 592 aaKnown RBP34.71■■■■□ 3.15
SPIRE1-202ENST00000409402 RTL5Q5HYW3 569 aaPredicted RBP34.7■■■■□ 3.14
SPIRE1-202ENST00000409402 CHGAP10645 457 aaKnown RBP34.65■■■■□ 3.14
SPIRE1-202ENST00000409402 ZCCHC6Q5VYS8 1495 aaKnown RBP34.65■■■■□ 3.14
SPIRE1-202ENST00000409402 PLPPR3Q6T4P5 718 aa34.6■■■■□ 3.13
SPIRE1-202ENST00000409402 CHMP7Q8WUX9 453 aaPredicted RBP34.47■■■■□ 3.11
SPIRE1-202ENST00000409402 BCL11AQ9H165 835 aa34.46■■■■□ 3.11
SPIRE1-202ENST00000409402 CCDC180Q9P1Z9 1646 aa34.44■■■■□ 3.1
SPIRE1-202ENST00000409402 TONSLQ96HA7 1378 aa34.38■■■■□ 3.09
SPIRE1-202ENST00000409402 RB1CC1Q8TDY2 1594 aa34.36■■■■□ 3.09
SPIRE1-202ENST00000409402 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.32■■■■□ 3.08
SPIRE1-202ENST00000409402 TSPY4P0CV99 314 aa34.28■■■■□ 3.08
SPIRE1-202ENST00000409402 TSPY10P0CW01 314 aa34.28■■■■□ 3.08
SPIRE1-202ENST00000409402 CHIC2Q9UKJ5 165 aa34.25■■■■□ 3.07
SPIRE1-202ENST00000409402 MTUS2Q5JR59 1369 aa34.16■■■■□ 3.06
SPIRE1-202ENST00000409402 GTF3C3Q9Y5Q9 886 aa34.07■■■■□ 3.04
SPIRE1-202ENST00000409402 KCNH8Q96L42 1107 aa33.95■■■■□ 3.03
SPIRE1-202ENST00000409402 KDM2AQ9Y2K7 1162 aa33.92■■■■□ 3.02
SPIRE1-202ENST00000409402 PLEKHD1A6NEE1 506 aa33.91■■■■□ 3.02
SPIRE1-202ENST00000409402 SCAF1Q9H7N4 1312 aaKnown RBP33.88■■■■□ 3.01
SPIRE1-202ENST00000409402 CLIP1P30622 1438 aa33.86■■■■□ 3.01
SPIRE1-202ENST00000409402 NACADO15069 1562 aa33.85■■■■□ 3.01
SPIRE1-202ENST00000409402 BAZ1BQ9UIG0 1483 aaKnown RBP33.84■■■■□ 3.01
SPIRE1-202ENST00000409402 PPP1R15AO75807 674 aaPredicted RBP33.82■■■■□ 3
SPIRE1-202ENST00000409402 FAM9BQ8IZU0 186 aa33.81■■■■□ 3
SPIRE1-202ENST00000409402 RSF1Q96T23 1441 aaPredicted RBP33.81■■■■□ 3
SPIRE1-202ENST00000409402 DDX10Q13206 875 aaKnown RBP33.8■■■■□ 3
SPIRE1-202ENST00000409402 ANP32AP39687 249 aaKnown RBP33.79■■■■□ 3
SPIRE1-202ENST00000409402 TMC1Q8TDI8 760 aa33.77■■■■□ 3
SPIRE1-202ENST00000409402 WDR43Q15061 677 aaKnown RBP eCLIP33.77■■■■□ 3
SPIRE1-202ENST00000409402 HNRNPUQ00839 825 aaKnown RBP eCLIP33.76■■■■□ 3
SPIRE1-202ENST00000409402 ERCC6Q03468 1493 aa33.74■■■□□ 2.99
SPIRE1-202ENST00000409402 DCAF1Q9Y4B6 1507 aa33.73■■■□□ 2.99
SPIRE1-202ENST00000409402 SALL2Q9Y467 1007 aaPredicted RBP33.71■■■□□ 2.99
SPIRE1-202ENST00000409402 RRP7BPQ9NSQ0 103 aa33.7■■■□□ 2.99
SPIRE1-202ENST00000409402 EEA1Q15075 1411 aa33.69■■■□□ 2.98
SPIRE1-202ENST00000409402 ARID4BQ4LE39 1312 aaPredicted RBP33.69■■■□□ 2.98
SPIRE1-202ENST00000409402 C14orf37Q86TY3 774 aa33.66■■■□□ 2.98
SPIRE1-202ENST00000409402 NPM2Q86SE8 214 aaKnown RBP33.65■■■□□ 2.98
SPIRE1-202ENST00000409402 GOLGA3Q08378 1498 aa33.63■■■□□ 2.97
SPIRE1-202ENST00000409402 WRNQ14191 1432 aaPredicted RBP eCLIP33.63■■■□□ 2.97
SPIRE1-202ENST00000409402 GOLGA6L2Q8N9W4 650 aaPredicted RBP33.63■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms