Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC13.86□□□□□ -0.197e-6■■■■□ 21.1
LSM11P83369 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.82□□□□□ -0.21e-10■■■■□ 21.1
LSM11P83369 C7orf50-205ENST00000444428 507 ntAPPRIS ALT2 TSL 313.65□□□□□ -0.227e-6■■■■□ 21.1
LSM11P83369 SEPT5-205ENST00000412544 1108 ntTSL 513.54□□□□□ -0.247e-6■■■■□ 21.1
LSM11P83369 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.265e-7■■■■□ 21.1
LSM11P83369 KLHDC4-218ENST00000567298 4572 ntTSL 513.32□□□□□ -0.287e-6■■■■□ 21.1
LSM11P83369 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.15□□□□□ -0.32e-6■■■■□ 21.1
LSM11P83369 KLHDC4-208ENST00000562261 1065 ntTSL 313.14□□□□□ -0.317e-6■■■■□ 21.1
LSM11P83369 CORO7-227ENST00000575714 2978 ntTSL 513.08□□□□□ -0.327e-6■■■■□ 21.1
LSM11P83369 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.347e-6■■■■□ 21.1
LSM11P83369 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.353e-6■■■■□ 21.1
LSM11P83369 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.353e-6■■■■□ 21.1
LSM11P83369 CENPT-233ENST00000569862 2957 ntTSL 212.63□□□□□ -0.396e-7■■■■□ 21.1
LSM11P83369 CENPT-218ENST00000565157 2133 ntTSL 212.62□□□□□ -0.396e-7■■■■□ 21.1
LSM11P83369 UBE2I-209ENST00000562470 433 ntTSL 212.38□□□□□ -0.437e-6■■■■□ 21.1
LSM11P83369 KIF22-202ENST00000400751 2493 ntTSL 2 BASIC12.02□□□□□ -0.481e-10■■■■□ 21.1
LSM11P83369 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.497e-6■■■■□ 21.1
LSM11P83369 CENPT-234ENST00000574569 897 ntTSL 211.93□□□□□ -0.57e-7■■■■□ 21.1
LSM11P83369 PAM16-213ENST00000575942 806 ntTSL 311.78□□□□□ -0.527e-6■■■■□ 21.1
LSM11P83369 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC11.25□□□□□ -0.617e-6■■■■□ 21.1
LSM11P83369 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC11.24□□□□□ -0.617e-6■■■■□ 21.1
LSM11P83369 CENPT-227ENST00000568495 1098 ntTSL 511.08□□□□□ -0.646e-7■■■■□ 21.1
LSM11P83369 GAK-204ENST00000504435 4346 ntTSL 210.83□□□□□ -0.687e-6■■■■□ 21.1
LSM11P83369 C19orf48-215ENST00000641539 717 nt10.57□□□□□ -0.727e-6■■■■□ 21.1
LSM11P83369 KIF22-207ENST00000568312 781 ntTSL 310.44□□□□□ -0.741e-10■■■■□ 21.1
LSM11P83369 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.27■□□□□ 0.514e-13■■■■□ 21.1
LSM11P83369 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.394e-13■■■■□ 21.1
LSM11P83369 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.87■□□□□ 0.134e-13■■■■□ 21.1
LSM11P83369 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.75■□□□□ 0.114e-13■■■■□ 21.1
LSM11P83369 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.01□□□□□ -0.014e-13■■■■□ 21.1
LSM11P83369 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.87□□□□□ -0.034e-13■■■■□ 21.1
LSM11P83369 SLC3A2-222ENST00000546253 582 ntTSL 413.28□□□□□ -0.284e-13■■■■□ 21.1
LSM11P83369 SLC3A2-220ENST00000542922 2174 ntTSL 212.94□□□□□ -0.344e-13■■■■□ 21.1
LSM11P83369 SLC3A2-212ENST00000538682 1368 ntTSL 1 (best)12.92□□□□□ -0.344e-13■■■■□ 21.1
LSM11P83369 SLC3A2-205ENST00000457660 873 ntTSL 510.97□□□□□ -0.654e-13■■■■□ 21.1
LSM11P83369 SLC3A2-223ENST00000546312 564 ntTSL 29.78□□□□□ -0.844e-13■■■■□ 21.1
LSM11P83369 SLC3A2-217ENST00000541425 595 ntTSL 59.66□□□□□ -0.864e-13■■■■□ 21.1
LSM11P83369 SLC3A2-215ENST00000539891 1300 ntTSL 1 (best)9.39□□□□□ -0.914e-13■■■■□ 21.1
LSM11P83369 SLC3A2-209ENST00000537508 583 ntTSL 28.13□□□□□ -1.114e-13■■■■□ 21.1
LSM11P83369 TMEM74B-203ENST00000481747 582 ntTSL 224.52■■□□□ 1.523e-6■■■■□ 21
LSM11P83369 TSC2-226ENST00000569930 2621 ntTSL 217.63■□□□□ 0.415e-6■■■■□ 21
LSM11P83369 TSC2-225ENST00000569110 1687 ntTSL 515.2■□□□□ 0.025e-6■■■■□ 21
LSM11P83369 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 05e-6■■■■□ 21
LSM11P83369 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.045e-6■■■■□ 21
LSM11P83369 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.065e-6■■■■□ 21
LSM11P83369 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.125e-6■■■■□ 21
LSM11P83369 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.145e-6■■■■□ 21
LSM11P83369 TSC2-206ENST00000439117 5073 ntTSL 1 (best)13.13□□□□□ -0.315e-6■■■■□ 21
LSM11P83369 TSC2-216ENST00000497886 3248 ntTSL 213.01□□□□□ -0.335e-6■■■■□ 21
LSM11P83369 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.345e-6■■■■□ 21
LSM11P83369 RNF166-209ENST00000567844 633 ntTSL 5 BASIC22.24■■□□□ 1.152e-6■■■■□ 21
LSM11P83369 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.142e-6■■■■□ 21
LSM11P83369 DCAF6-206ENST00000455334 796 ntTSL 516.85■□□□□ 0.294e-8■■■■□ 21
LSM11P83369 DCAF6-208ENST00000470721 2803 ntTSL 216.34■□□□□ 0.214e-8■■■■□ 21
LSM11P83369 DCAF6-205ENST00000450548 724 ntTSL 315.82■□□□□ 0.124e-8■■■■□ 21
LSM11P83369 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.394e-8■■■■□ 21
LSM11P83369 DCAF6-203ENST00000367843 3302 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.434e-8■■■■□ 21
LSM11P83369 DCAF6-209ENST00000470919 827 ntTSL 212.15□□□□□ -0.464e-8■■■■□ 21
LSM11P83369 DCAF6-204ENST00000432587 3522 ntTSL 2 BASIC12.07□□□□□ -0.484e-8■■■■□ 21
LSM11P83369 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.144e-8■■■■□ 21
LSM11P83369 ZNF276-206ENST00000563983 3403 ntTSL 211.44□□□□□ -0.581e-9■■■■□ 20.9
LSM11P83369 CCDC68-205ENST00000592040 708 ntTSL 317.55■□□□□ 0.44e-12■■■■□ 20.9
LSM11P83369 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.134e-12■■■■□ 20.9
LSM11P83369 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC10.02□□□□□ -0.814e-12■■■■□ 20.9
LSM11P83369 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.034e-12■■■■□ 20.9
LSM11P83369 GET4-207ENST00000483469 370 ntTSL 216.32■□□□□ 0.22e-9■■■■□ 20.9
LSM11P83369 GET4-203ENST00000412734 873 ntTSL 213.05□□□□□ -0.322e-9■■■■□ 20.9
LSM11P83369 GET4-204ENST00000426056 502 ntTSL 49.89□□□□□ -0.832e-9■■■■□ 20.9
LSM11P83369 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.32■□□□□ 0.361e-6■■■■□ 20.9
LSM11P83369 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.011e-6■■■■□ 20.9
LSM11P83369 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.68□□□□□ -0.061e-6■■■■□ 20.9
LSM11P83369 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.24□□□□□ -0.131e-6■■■■□ 20.9
LSM11P83369 GSE1-213ENST00000568080 289 ntTSL 512.84□□□□□ -0.353e-6■■■■□ 20.9
LSM11P83369 HDAC6-220ENST00000477528 4832 ntTSL 1 (best)13.32□□□□□ -0.282e-7■■■■□ 20.9
LSM11P83369 HDAC6-230ENST00000488543 2484 ntTSL 211.23□□□□□ -0.612e-7■■■■□ 20.9
LSM11P83369 HDAC6-201ENST00000334136 4190 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.72e-7■■■■□ 20.9
LSM11P83369 HDAC6-203ENST00000376619 4179 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.732e-7■■■■□ 20.9
LSM11P83369 HDAC6-228ENST00000486227 4718 ntTSL 29.94□□□□□ -0.822e-7■■■■□ 20.9
LSM11P83369 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -08e-7■■■■□ 20.8
LSM11P83369 SKI-202ENST00000478223 294 ntTSL 310.22□□□□□ -0.773e-6■■■■□ 20.8
LSM11P83369 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.98■■■□□ 2.232e-7■■■■□ 20.8
LSM11P83369 CYHR1-207ENST00000528558 907 ntTSL 219.1■□□□□ 0.652e-7■■■■□ 20.8
LSM11P83369 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.02■□□□□ 0.643e-7■■■■□ 20.8
LSM11P83369 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.43e-7■■■■□ 20.8
LSM11P83369 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.323e-7■■■■□ 20.8
LSM11P83369 DVL1-203ENST00000472445 639 ntTSL 215.62■□□□□ 0.093e-6■■■■□ 20.8
LSM11P83369 ATXN7L3-210ENST00000591295 3017 ntTSL 512.23□□□□□ -0.457e-11■■■■□ 20.8
LSM11P83369 ATXN7L3-202ENST00000454077 3523 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.717e-11■■■■□ 20.8
LSM11P83369 ATXN7L3-201ENST00000389384 3811 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.827e-11■■■■□ 20.8
LSM11P83369 LPIN3-201ENST00000373257 4363 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.642e-9■■■■□ 20.8
LSM11P83369 EGFL7-206ENST00000492002 654 ntTSL 520.27■□□□□ 0.844e-8■■■■□ 20.8
LSM11P83369 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.69■□□□□ 0.425e-7■■■■□ 20.7
LSM11P83369 LMNB1-204ENST00000463908 557 ntTSL 416.87■□□□□ 0.295e-7■■■■□ 20.7
LSM11P83369 LMNB1-206ENST00000492190 738 ntTSL 315.61■□□□□ 0.095e-7■■■■□ 20.7
LSM11P83369 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.025e-7■■■■□ 20.7
LSM11P83369 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)14.47□□□□□ -0.095e-7■■■■□ 20.7
LSM11P83369 LMNB1-205ENST00000472034 730 ntTSL 36.82□□□□□ -1.325e-7■■■■□ 20.7
LSM11P83369 LMNB1-208ENST00000504788 1801 ntTSL 25.15□□□□□ -1.595e-7■■■■□ 20.7
LSM11P83369 PKD1P6-201ENST00000343738 4769 ntBASIC19.14■□□□□ 0.651e-6■■■■□ 20.7
LSM11P83369 UBE2J2-209ENST00000461142 837 ntTSL 319.43■□□□□ 0.77e-7■■■■□ 20.7
Retrieved 100 of 11,495 protein–RNA pairs in 64.8 ms