RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 NISCHQ9Y2I1 1504 aa20.14■□□□□ 0.81
HDAC6-228ENST00000486227 DCAF8L2P0C7V8 631 aa19.66■□□□□ 0.74
HDAC6-228ENST00000486227 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
HDAC6-228ENST00000486227 SHROOM4Q9ULL8 1493 aa18.71■□□□□ 0.59
HDAC6-228ENST00000486227 EHMT2Q96KQ7 1210 aa17.85■□□□□ 0.45
HDAC6-228ENST00000486227 FAM9AQ8IZU1 332 aaPredicted RBP17.59■□□□□ 0.41
HDAC6-228ENST00000486227 TRIM41Q8WV44 630 aa17.37■□□□□ 0.37
HDAC6-228ENST00000486227 PCGF6Q9BYE7 350 aa17.25■□□□□ 0.35
HDAC6-228ENST00000486227 APLP2Q06481 763 aa17.22■□□□□ 0.35
HDAC6-228ENST00000486227 PELP1Q8IZL8 1130 aaKnown RBP17.2■□□□□ 0.34
HDAC6-228ENST00000486227 TTBK1Q5TCY1 1321 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-228ENST00000486227 ABCC9O60706 1549 aa17.11■□□□□ 0.33
HDAC6-228ENST00000486227 RANGAP1P46060 587 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-228ENST00000486227 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
HDAC6-228ENST00000486227 UBTFP17480 764 aaKnown RBP17■□□□□ 0.31
HDAC6-228ENST00000486227 HRCP23327 699 aa16.99■□□□□ 0.31
HDAC6-228ENST00000486227 LOC105371045A0A1W2PR82 267 aa16.9■□□□□ 0.3
HDAC6-228ENST00000486227 ZEB1P37275 1124 aaPredicted RBP16.89■□□□□ 0.3
HDAC6-228ENST00000486227 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.297e-7■■■□□ 16.1
HDAC6-228ENST00000486227 MYT1Q01538 1121 aa16.84■□□□□ 0.29
HDAC6-228ENST00000486227 PPARGC1BQ86YN6 1023 aaKnown RBP16.82■□□□□ 0.28
HDAC6-228ENST00000486227 ATP1B4Q9UN42 357 aaPredicted RBP16.8■□□□□ 0.28
HDAC6-228ENST00000486227 CCER1Q8TC90 406 aaPredicted RBP16.75■□□□□ 0.27
HDAC6-228ENST00000486227 ZCCHC6Q5VYS8 1495 aaKnown RBP16.73■□□□□ 0.27
HDAC6-228ENST00000486227 CENPBP07199 599 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-228ENST00000486227 TRIM26Q12899 539 aaPredicted RBP16.64■□□□□ 0.25
HDAC6-228ENST00000486227 CCDC180Q9P1Z9 1646 aa16.6■□□□□ 0.25
HDAC6-228ENST00000486227 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
HDAC6-228ENST00000486227 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.39■□□□□ 0.21
HDAC6-228ENST00000486227 HNRNPUL2Q1KMD3 747 aaKnown RBP16.39■□□□□ 0.21
HDAC6-228ENST00000486227 ITGAEP38570 1179 aa16.37■□□□□ 0.21
HDAC6-228ENST00000486227 MYT1LQ9UL68 1186 aa16.31■□□□□ 0.2
HDAC6-228ENST00000486227 CSRNP3Q8WYN3 585 aa16.17■□□□□ 0.18
HDAC6-228ENST00000486227 YTHDC1Q96MU7 727 aaKnown RBP16.14■□□□□ 0.18
HDAC6-228ENST00000486227 RSF1Q96T23 1441 aaPredicted RBP16.09■□□□□ 0.17
HDAC6-228ENST00000486227 FBLN2P98095 1184 aa16.08■□□□□ 0.16
HDAC6-228ENST00000486227 RB1CC1Q8TDY2 1594 aa16.08■□□□□ 0.16
HDAC6-228ENST00000486227 NACADO15069 1562 aa16.03■□□□□ 0.16
HDAC6-228ENST00000486227 FAM50AQ14320 339 aaKnown RBP16.02■□□□□ 0.15
HDAC6-228ENST00000486227 DCAF1Q9Y4B6 1507 aa15.99■□□□□ 0.15
HDAC6-228ENST00000486227 ERICH6Q7L0X2 663 aa15.98■□□□□ 0.15
HDAC6-228ENST00000486227 DIEXFQ68CQ4 756 aaKnown RBP15.96■□□□□ 0.15
HDAC6-228ENST00000486227 P3H3Q8IVL6 736 aa15.96■□□□□ 0.14
HDAC6-228ENST00000486227 GTF3C3Q9Y5Q9 886 aa15.92■□□□□ 0.14
HDAC6-228ENST00000486227 ACIN1Q9UKV3 1341 aaKnown RBP15.89■□□□□ 0.13
HDAC6-228ENST00000486227 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
HDAC6-228ENST00000486227 NEFLP07196 543 aa15.88■□□□□ 0.13
HDAC6-228ENST00000486227 CECR2Q9BXF3 1484 aa15.87■□□□□ 0.13
HDAC6-228ENST00000486227 POLR3GLQ9BT43 218 aa15.86■□□□□ 0.13
HDAC6-228ENST00000486227 TRIM52Q96A61 297 aa15.8■□□□□ 0.12
HDAC6-228ENST00000486227 ARID3CA6NKF2 412 aa15.8■□□□□ 0.12
HDAC6-228ENST00000486227 NEUROD1Q13562 356 aa15.8■□□□□ 0.12
HDAC6-228ENST00000486227 CNGB1Q14028 1251 aaPredicted RBP15.76■□□□□ 0.11
HDAC6-228ENST00000486227 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
HDAC6-228ENST00000486227 BAZ1AQ9NRL2 1556 aaPredicted RBP15.72■□□□□ 0.11
HDAC6-228ENST00000486227 BAZ1BQ9UIG0 1483 aaKnown RBP15.71■□□□□ 0.11
HDAC6-228ENST00000486227 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
HDAC6-228ENST00000486227 MROH2BQ7Z745 1585 aa15.65■□□□□ 0.1
HDAC6-228ENST00000486227 NPM1P06748 294 aaKnown RBP eCLIP15.61■□□□□ 0.09
HDAC6-228ENST00000486227 ZNF316A6NFI3 1004 aaPredicted RBP15.61■□□□□ 0.09
HDAC6-228ENST00000486227 CLIP1P30622 1438 aa15.61■□□□□ 0.09
HDAC6-228ENST00000486227 CDK11AQ9UQ88 783 aaPredicted RBP15.6■□□□□ 0.09
HDAC6-228ENST00000486227 EEA1Q15075 1411 aa15.59■□□□□ 0.09
HDAC6-228ENST00000486227 SLC4A1APQ9BWU0 796 aaKnown RBP15.58■□□□□ 0.08
HDAC6-228ENST00000486227 ZNF777Q9ULD5 760 aaPredicted RBP15.57■□□□□ 0.08
HDAC6-228ENST00000486227 ZNF326Q5BKZ1 582 aaKnown RBP15.56■□□□□ 0.08
HDAC6-228ENST00000486227 CEP162Q5TB80 1403 aa15.56■□□□□ 0.08
HDAC6-228ENST00000486227 GOLGA3Q08378 1498 aa15.54■□□□□ 0.08
HDAC6-228ENST00000486227 CHMP7Q8WUX9 453 aaPredicted RBP15.5■□□□□ 0.07
HDAC6-228ENST00000486227 CCDC88BA6NC98 1476 aa15.49■□□□□ 0.07
HDAC6-228ENST00000486227 TNIKQ9UKE5 1360 aa15.48■□□□□ 0.07
HDAC6-228ENST00000486227 SOGA1O94964 1423 aa15.46■□□□□ 0.07
HDAC6-228ENST00000486227 KIF27Q86VH2 1401 aa15.46■□□□□ 0.07
HDAC6-228ENST00000486227 ESF1Q9H501 851 aaKnown RBP15.46■□□□□ 0.06
HDAC6-228ENST00000486227 CLSPNQ9HAW4 1339 aa15.45■□□□□ 0.06
HDAC6-228ENST00000486227 CHIC2Q9UKJ5 165 aa15.43■□□□□ 0.06
HDAC6-228ENST00000486227 CEP164Q9UPV0 1460 aa15.43■□□□□ 0.06
HDAC6-228ENST00000486227 ANP32CO43423 234 aa15.43■□□□□ 0.06
HDAC6-228ENST00000486227 MTUS2Q5JR59 1369 aa15.41■□□□□ 0.06
HDAC6-228ENST00000486227 WIZO95785 1651 aa15.4■□□□□ 0.06
HDAC6-228ENST00000486227 BCANQ96GW7 911 aa15.4■□□□□ 0.06
HDAC6-228ENST00000486227 ABCC8Q09428 1581 aa15.39■□□□□ 0.05
HDAC6-228ENST00000486227 TONSLQ96HA7 1378 aa15.34■□□□□ 0.05
HDAC6-228ENST00000486227 ERCC6Q03468 1493 aa15.33■□□□□ 0.05
HDAC6-228ENST00000486227 SMARCA2P51531 1590 aa15.32■□□□□ 0.04
HDAC6-228ENST00000486227 TOP2AP11388 1531 aaKnown RBP15.31■□□□□ 0.04
HDAC6-228ENST00000486227 CUX2O14529 1486 aa15.29■□□□□ 0.04
HDAC6-228ENST00000486227 CARMIL1Q5VZK9 1371 aa15.26■□□□□ 0.03
HDAC6-228ENST00000486227 DDX10Q13206 875 aaKnown RBP15.25■□□□□ 0.03
HDAC6-228ENST00000486227 RRP7BPQ9NSQ0 103 aa15.25■□□□□ 0.03
HDAC6-228ENST00000486227 STAG3Q9UJ98 1225 aa15.25■□□□□ 0.03
HDAC6-228ENST00000486227 PLPPR3Q6T4P5 718 aa15.25■□□□□ 0.03
HDAC6-228ENST00000486227 ATAD2BQ9ULI0 1458 aa15.24■□□□□ 0.03
HDAC6-228ENST00000486227 TSPY4P0CV99 314 aa15.23■□□□□ 0.03
HDAC6-228ENST00000486227 TSPY10P0CW01 314 aa15.23■□□□□ 0.03
HDAC6-228ENST00000486227 RTL5Q5HYW3 569 aaPredicted RBP15.22■□□□□ 0.03
HDAC6-228ENST00000486227 SMARCA4P51532 1647 aa15.21■□□□□ 0.03
HDAC6-228ENST00000486227 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.21■□□□□ 0.039e-7■■■■□ 20.8
HDAC6-228ENST00000486227 CHGAP10645 457 aaKnown RBP15.2■□□□□ 0.02
HDAC6-228ENST00000486227 PLEKHD1A6NEE1 506 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms