RNA–Protein interactions for RNA: ENST00000478223.2

SKI-202, Transcript of SKI proto-oncogene, humanhuman

TSL 3

Gene SKI, Length 294 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKI-202ENST00000478223 NISCHQ9Y2I1 1504 aa28.98■■■□□ 2.23
SKI-202ENST00000478223 CCDC180Q9P1Z9 1646 aa25.95■■□□□ 1.74
SKI-202ENST00000478223 ABCC9O60706 1549 aa25.43■■□□□ 1.66
SKI-202ENST00000478223 RB1CC1Q8TDY2 1594 aa24.4■■□□□ 1.5
SKI-202ENST00000478223 NACADO15069 1562 aa24.31■■□□□ 1.48
SKI-202ENST00000478223 UNC13AQ9UPW8 1703 aa24.15■■□□□ 1.46
SKI-202ENST00000478223 DCAF8L2P0C7V8 631 aa24.14■■□□□ 1.45
SKI-202ENST00000478223 ZCCHC6Q5VYS8 1495 aaKnown RBP24.13■■□□□ 1.45
SKI-202ENST00000478223 MYO15BQ96JP2 1530 aa24.06■■□□□ 1.44
SKI-202ENST00000478223 DCAF1Q9Y4B6 1507 aa23.94■■□□□ 1.42
SKI-202ENST00000478223 BICRAQ9NZM4 1560 aa23.77■■□□□ 1.4
SKI-202ENST00000478223 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
SKI-202ENST00000478223 SCRIBQ14160 1630 aa23.66■■□□□ 1.38
SKI-202ENST00000478223 DNAJC5BQ9UF47 199 aa23.47■■□□□ 1.35
SKI-202ENST00000478223 SHROOM4Q9ULL8 1493 aa23.31■■□□□ 1.32
SKI-202ENST00000478223 EIF4G1Q04637 1599 aaKnown RBP23.1■■□□□ 1.29
SKI-202ENST00000478223 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.28
SKI-202ENST00000478223 CECR2Q9BXF3 1484 aa22.83■■□□□ 1.25
SKI-202ENST00000478223 SMARCA4P51532 1647 aa22.6■■□□□ 1.21
SKI-202ENST00000478223 BAZ1AQ9NRL2 1556 aaPredicted RBP22.46■■□□□ 1.19
SKI-202ENST00000478223 ATAD2BQ9ULI0 1458 aa22.41■■□□□ 1.18
SKI-202ENST00000478223 NCAPD3P42695 1498 aa22.38■■□□□ 1.17
SKI-202ENST00000478223 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
SKI-202ENST00000478223 MROH2BQ7Z745 1585 aa22.38■■□□□ 1.17
SKI-202ENST00000478223 PEG3Q9GZU2 1588 aa22.33■■□□□ 1.17
SKI-202ENST00000478223 HMGXB3Q12766 1538 aa22.33■■□□□ 1.17
SKI-202ENST00000478223 WIZO95785 1651 aa22.22■■□□□ 1.15
SKI-202ENST00000478223 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
SKI-202ENST00000478223 NESP48681 1621 aa22.02■■□□□ 1.11
SKI-202ENST00000478223 RSF1Q96T23 1441 aaPredicted RBP21.98■■□□□ 1.11
SKI-202ENST00000478223 KIF21AQ7Z4S6 1674 aa21.9■■□□□ 1.1
SKI-202ENST00000478223 LAMC3Q9Y6N6 1575 aa21.9■■□□□ 1.1
SKI-202ENST00000478223 TOP2AP11388 1531 aaKnown RBP21.87■■□□□ 1.09
SKI-202ENST00000478223 ERCC6Q03468 1493 aa21.87■■□□□ 1.09
SKI-202ENST00000478223 THOC2Q8NI27 1593 aaKnown RBP21.78■■□□□ 1.08
SKI-202ENST00000478223 PRDM2Q13029 1718 aa21.7■■□□□ 1.06
SKI-202ENST00000478223 CUX2O14529 1486 aa21.7■■□□□ 1.06
SKI-202ENST00000478223 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
SKI-202ENST00000478223 PDS5BQ9NTI5 1447 aa21.63■■□□□ 1.05
SKI-202ENST00000478223 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.05
SKI-202ENST00000478223 CFTRP13569 1480 aa21.58■■□□□ 1.05
SKI-202ENST00000478223 FANCD2Q9BXW9 1451 aa21.51■■□□□ 1.03
SKI-202ENST00000478223 MRC2Q9UBG0 1479 aa21.5■■□□□ 1.03
SKI-202ENST00000478223 CEP164Q9UPV0 1460 aa21.5■■□□□ 1.03
SKI-202ENST00000478223 WDR62O43379 1518 aa21.5■■□□□ 1.03
SKI-202ENST00000478223 URB2Q14146 1524 aaKnown RBP21.36■■□□□ 1.01
SKI-202ENST00000478223 SUPT5HO00267 1087 aaKnown RBP21.25■□□□□ 0.99
SKI-202ENST00000478223 TOPBP1Q92547 1522 aa21.19■□□□□ 0.98
SKI-202ENST00000478223 DNMBPQ6XZF7 1577 aa21.17■□□□□ 0.98
SKI-202ENST00000478223 DNAJC5Q9H3Z4 198 aa21.15■□□□□ 0.98
SKI-202ENST00000478223 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
SKI-202ENST00000478223 TARBP1Q13395 1621 aaKnown RBP21.04■□□□□ 0.96
SKI-202ENST00000478223 ZNF608Q9ULD9 1512 aaPredicted RBP21.03■□□□□ 0.96
SKI-202ENST00000478223 IFT140Q96RY7 1462 aa21.01■□□□□ 0.95
SKI-202ENST00000478223 EIF4G3O43432 1585 aaKnown RBP21.01■□□□□ 0.95
SKI-202ENST00000478223 CUX1P39880 1505 aa21■□□□□ 0.95
SKI-202ENST00000478223 POLA1P09884 1462 aaPredicted RBP20.99■□□□□ 0.95
SKI-202ENST00000478223 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
SKI-202ENST00000478223 FGD5Q6ZNL6 1462 aa20.92■□□□□ 0.94
SKI-202ENST00000478223 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
SKI-202ENST00000478223 CHD1O14646 1710 aa20.87■□□□□ 0.93
SKI-202ENST00000478223 BIVM-ERCC5R4GMW8 1640 aa20.85■□□□□ 0.93
SKI-202ENST00000478223 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.931e-6■■□□□ 11.6
SKI-202ENST00000478223 SYNJ1O43426 1573 aa20.82■□□□□ 0.92
SKI-202ENST00000478223 SOGA1O94964 1423 aa20.82■□□□□ 0.92
SKI-202ENST00000478223 PBRM1Q86U86 1689 aa20.8■□□□□ 0.92
SKI-202ENST00000478223 TOP2BQ02880 1626 aa20.78■□□□□ 0.92
SKI-202ENST00000478223 TDRD9Q8NDG6 1382 aaKnown RBP20.73■□□□□ 0.91
SKI-202ENST00000478223 ABCA5Q8WWZ7 1642 aa20.73■□□□□ 0.91
SKI-202ENST00000478223 WRNQ14191 1432 aaPredicted RBP eCLIP20.7■□□□□ 0.94e-6■■■■■ 37.9
SKI-202ENST00000478223 ABCA10Q8WWZ4 1543 aa20.68■□□□□ 0.9
SKI-202ENST00000478223 OSCARQ8IYS5 282 aa20.67■□□□□ 0.9
SKI-202ENST00000478223 SNAPC4Q5SXM2 1469 aa20.67■□□□□ 0.9
SKI-202ENST00000478223 GAPVD1Q14C86 1478 aa20.62■□□□□ 0.89
SKI-202ENST00000478223 GRIN2BQ13224 1484 aa20.61■□□□□ 0.89
SKI-202ENST00000478223 RIMBP3CA6NJZ7 1639 aa20.6■□□□□ 0.89
SKI-202ENST00000478223 RIMBP3BA6NNM3 1639 aa20.6■□□□□ 0.89
SKI-202ENST00000478223 RIMBP3Q9UFD9 1639 aa20.6■□□□□ 0.89
SKI-202ENST00000478223 MAGI1Q96QZ7 1491 aaPredicted RBP20.58■□□□□ 0.89
SKI-202ENST00000478223 ADAMTS12P58397 1594 aa20.52■□□□□ 0.88
SKI-202ENST00000478223 FBLN2P98095 1184 aa20.52■□□□□ 0.88
SKI-202ENST00000478223 SYNJ2O15056 1496 aa20.51■□□□□ 0.87
SKI-202ENST00000478223 ARHGEF11O15085 1522 aa20.5■□□□□ 0.87
SKI-202ENST00000478223 CLASP1Q7Z460 1538 aa20.5■□□□□ 0.87
SKI-202ENST00000478223 ERICH3Q5RHP9 1530 aa20.43■□□□□ 0.86
SKI-202ENST00000478223 CHMP7Q8WUX9 453 aaPredicted RBP20.42■□□□□ 0.86
SKI-202ENST00000478223 TRIM41Q8WV44 630 aa20.42■□□□□ 0.86
SKI-202ENST00000478223 GRIN2AQ12879 1464 aa20.39■□□□□ 0.85
SKI-202ENST00000478223 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
SKI-202ENST00000478223 ARAP1Q96P48 1450 aa20.33■□□□□ 0.85
SKI-202ENST00000478223 FHAD1B1AJZ9 1412 aa20.33■□□□□ 0.84
SKI-202ENST00000478223 CUL7Q14999 1698 aa20.29■□□□□ 0.84
SKI-202ENST00000478223 NUP160Q12769 1436 aa20.28■□□□□ 0.84
SKI-202ENST00000478223 SHROOM2Q13796 1616 aa20.27■□□□□ 0.84
SKI-202ENST00000478223 ERCC6L2Q5T890 1561 aa20.27■□□□□ 0.84
SKI-202ENST00000478223 KIF27Q86VH2 1401 aa20.25■□□□□ 0.83
SKI-202ENST00000478223 RUSC2Q8N2Y8 1516 aa20.24■□□□□ 0.83
SKI-202ENST00000478223 CYB5RLQ6IPT4 315 aa20.2■□□□□ 0.82
SKI-202ENST00000478223 IGF1RP08069 1367 aa20.2■□□□□ 0.82
SKI-202ENST00000478223 CARMIL1Q5VZK9 1371 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms