RNA–Protein interactions for RNA: ENST00000334136.9

HDAC6-201, Transcript of histone deacetylase 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC6, Length 4,190 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-201ENST00000334136 NISCHQ9Y2I1 1504 aa24.28■■□□□ 1.48
HDAC6-201ENST00000334136 DCAF8L2P0C7V8 631 aa22.09■■□□□ 1.13
HDAC6-201ENST00000334136 ABCC9O60706 1549 aa20.92■□□□□ 0.94
HDAC6-201ENST00000334136 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
HDAC6-201ENST00000334136 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
HDAC6-201ENST00000334136 SUPT5HO00267 1087 aaKnown RBP20.35■□□□□ 0.85
HDAC6-201ENST00000334136 ZCCHC6Q5VYS8 1495 aaKnown RBP20.18■□□□□ 0.82
HDAC6-201ENST00000334136 PABPN1Q86U42 306 aaKnown RBP eCLIP20.07■□□□□ 0.87e-7■■■□□ 16.1
HDAC6-201ENST00000334136 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
HDAC6-201ENST00000334136 NACADO15069 1562 aa19.86■□□□□ 0.77
HDAC6-201ENST00000334136 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
HDAC6-201ENST00000334136 DCAF1Q9Y4B6 1507 aa19.7■□□□□ 0.74
HDAC6-201ENST00000334136 MYO15BQ96JP2 1530 aa19.49■□□□□ 0.71
HDAC6-201ENST00000334136 TRIM41Q8WV44 630 aa19.05■□□□□ 0.64
HDAC6-201ENST00000334136 EHMT2Q96KQ7 1210 aa19■□□□□ 0.63
HDAC6-201ENST00000334136 CECR2Q9BXF3 1484 aa18.99■□□□□ 0.63
HDAC6-201ENST00000334136 FAM9AQ8IZU1 332 aaPredicted RBP18.97■□□□□ 0.63
HDAC6-201ENST00000334136 RSF1Q96T23 1441 aaPredicted RBP18.93■□□□□ 0.62
HDAC6-201ENST00000334136 BAZ1AQ9NRL2 1556 aaPredicted RBP18.92■□□□□ 0.62
HDAC6-201ENST00000334136 BAZ1BQ9UIG0 1483 aaKnown RBP18.8■□□□□ 0.6
HDAC6-201ENST00000334136 MROH2BQ7Z745 1585 aa18.76■□□□□ 0.59
HDAC6-201ENST00000334136 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
HDAC6-201ENST00000334136 CHIC1Q5VXU3 224 aa18.68■□□□□ 0.58
HDAC6-201ENST00000334136 BICRAQ9NZM4 1560 aa18.65■□□□□ 0.58
HDAC6-201ENST00000334136 SMARCA2P51531 1590 aa18.64■□□□□ 0.57
HDAC6-201ENST00000334136 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
HDAC6-201ENST00000334136 ATAD2BQ9ULI0 1458 aa18.57■□□□□ 0.56
HDAC6-201ENST00000334136 RANGAP1P46060 587 aaPredicted RBP18.56■□□□□ 0.56
HDAC6-201ENST00000334136 EIF4G1Q04637 1599 aaKnown RBP18.55■□□□□ 0.56
HDAC6-201ENST00000334136 UBTFP17480 764 aaKnown RBP18.55■□□□□ 0.56
HDAC6-201ENST00000334136 UNC13AQ9UPW8 1703 aa18.54■□□□□ 0.56
HDAC6-201ENST00000334136 WIZO95785 1651 aa18.51■□□□□ 0.55
HDAC6-201ENST00000334136 TOP2AP11388 1531 aaKnown RBP18.38■□□□□ 0.53
HDAC6-201ENST00000334136 CCDC88BA6NC98 1476 aa18.38■□□□□ 0.53
HDAC6-201ENST00000334136 APLP2Q06481 763 aa18.38■□□□□ 0.53
HDAC6-201ENST00000334136 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
HDAC6-201ENST00000334136 CC2D2AQ9P2K1 1620 aa18.35■□□□□ 0.53
HDAC6-201ENST00000334136 DNAJC5BQ9UF47 199 aa18.34■□□□□ 0.53
HDAC6-201ENST00000334136 ERCC6Q03468 1493 aa18.33■□□□□ 0.53
HDAC6-201ENST00000334136 FBLN2P98095 1184 aa18.29■□□□□ 0.52
HDAC6-201ENST00000334136 ATP1B4Q9UN42 357 aaPredicted RBP18.28■□□□□ 0.52
HDAC6-201ENST00000334136 CADPSQ9ULU8 1353 aa18.26■□□□□ 0.51
HDAC6-201ENST00000334136 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
HDAC6-201ENST00000334136 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
HDAC6-201ENST00000334136 TTBK1Q5TCY1 1321 aaPredicted RBP18.2■□□□□ 0.5
HDAC6-201ENST00000334136 WRNQ14191 1432 aaPredicted RBP eCLIP18.19■□□□□ 0.5
HDAC6-201ENST00000334136 HRCP23327 699 aa18.19■□□□□ 0.5
HDAC6-201ENST00000334136 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
HDAC6-201ENST00000334136 HMGXB3Q12766 1538 aa18.13■□□□□ 0.49
HDAC6-201ENST00000334136 PPARGC1BQ86YN6 1023 aaKnown RBP18.08■□□□□ 0.48
HDAC6-201ENST00000334136 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
HDAC6-201ENST00000334136 CEP164Q9UPV0 1460 aa18.01■□□□□ 0.47
HDAC6-201ENST00000334136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
HDAC6-201ENST00000334136 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
HDAC6-201ENST00000334136 CHMP7Q8WUX9 453 aaPredicted RBP17.98■□□□□ 0.47
HDAC6-201ENST00000334136 PEG3Q9GZU2 1588 aa17.97■□□□□ 0.47
HDAC6-201ENST00000334136 ABCC8Q09428 1581 aa17.96■□□□□ 0.47
HDAC6-201ENST00000334136 NESP48681 1621 aa17.95■□□□□ 0.46
HDAC6-201ENST00000334136 KIF27Q86VH2 1401 aa17.91■□□□□ 0.46
HDAC6-201ENST00000334136 CFTRP13569 1480 aa17.91■□□□□ 0.46
HDAC6-201ENST00000334136 PELP1Q8IZL8 1130 aaKnown RBP17.91■□□□□ 0.46
HDAC6-201ENST00000334136 SOGA1O94964 1423 aa17.88■□□□□ 0.45
HDAC6-201ENST00000334136 ZEB1P37275 1124 aaPredicted RBP17.87■□□□□ 0.45
HDAC6-201ENST00000334136 P3H3Q8IVL6 736 aa17.87■□□□□ 0.45
HDAC6-201ENST00000334136 CUX2O14529 1486 aa17.86■□□□□ 0.45
HDAC6-201ENST00000334136 EEA1Q15075 1411 aa17.83■□□□□ 0.45
HDAC6-201ENST00000334136 TDRD9Q8NDG6 1382 aaKnown RBP17.83■□□□□ 0.44
HDAC6-201ENST00000334136 CCER1Q8TC90 406 aaPredicted RBP17.82■□□□□ 0.44
HDAC6-201ENST00000334136 CENPBP07199 599 aaPredicted RBP17.78■□□□□ 0.44
HDAC6-201ENST00000334136 TRIM26Q12899 539 aaPredicted RBP17.77■□□□□ 0.43
HDAC6-201ENST00000334136 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
HDAC6-201ENST00000334136 CARMIL1Q5VZK9 1371 aa17.7■□□□□ 0.42
HDAC6-201ENST00000334136 FGD5Q6ZNL6 1462 aa17.68■□□□□ 0.42
HDAC6-201ENST00000334136 MRC2Q9UBG0 1479 aa17.68■□□□□ 0.42
HDAC6-201ENST00000334136 ARID3CA6NKF2 412 aa17.67■□□□□ 0.42
HDAC6-201ENST00000334136 YTHDC1Q96MU7 727 aaKnown RBP17.66■□□□□ 0.42
HDAC6-201ENST00000334136 GOLGA3Q08378 1498 aa17.63■□□□□ 0.41
HDAC6-201ENST00000334136 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
HDAC6-201ENST00000334136 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
HDAC6-201ENST00000334136 NPM1P06748 294 aaKnown RBP eCLIP17.57■□□□□ 0.4
HDAC6-201ENST00000334136 MYT1LQ9UL68 1186 aa17.57■□□□□ 0.4
HDAC6-201ENST00000334136 ITGAEP38570 1179 aa17.54■□□□□ 0.4
HDAC6-201ENST00000334136 CLIP1P30622 1438 aa17.53■□□□□ 0.4
HDAC6-201ENST00000334136 GAPVD1Q14C86 1478 aa17.53■□□□□ 0.4
HDAC6-201ENST00000334136 CUX1P39880 1505 aa17.53■□□□□ 0.4
HDAC6-201ENST00000334136 AQRO60306 1485 aaKnown RBP eCLIP17.52■□□□□ 0.43e-9■■■■■ 27.5
HDAC6-201ENST00000334136 CDK11AQ9UQ88 783 aaPredicted RBP17.52■□□□□ 0.4
HDAC6-201ENST00000334136 SYNJ1O43426 1573 aa17.51■□□□□ 0.39
HDAC6-201ENST00000334136 RUSC2Q8N2Y8 1516 aa17.51■□□□□ 0.39
HDAC6-201ENST00000334136 DNMBPQ6XZF7 1577 aa17.5■□□□□ 0.39
HDAC6-201ENST00000334136 POLA1P09884 1462 aaPredicted RBP17.5■□□□□ 0.39
HDAC6-201ENST00000334136 TNIKQ9UKE5 1360 aa17.48■□□□□ 0.39
HDAC6-201ENST00000334136 IFT140Q96RY7 1462 aa17.48■□□□□ 0.39
HDAC6-201ENST00000334136 TOP2BQ02880 1626 aa17.45■□□□□ 0.38
HDAC6-201ENST00000334136 IGF1RP08069 1367 aa17.45■□□□□ 0.38
HDAC6-201ENST00000334136 RAPGEF2Q9Y4G8 1499 aa17.44■□□□□ 0.38
HDAC6-201ENST00000334136 URB2Q14146 1524 aaKnown RBP17.44■□□□□ 0.38
HDAC6-201ENST00000334136 CEP162Q5TB80 1403 aa17.43■□□□□ 0.38
HDAC6-201ENST00000334136 FAM50AQ14320 339 aaKnown RBP17.42■□□□□ 0.38
HDAC6-201ENST00000334136 OSCARQ8IYS5 282 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms