RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 NISCHQ9Y2I1 1504 aa27.49■■□□□ 1.99
HDAC6-220ENST00000477528 DCAF8L2P0C7V8 631 aa25.55■■□□□ 1.68
HDAC6-220ENST00000477528 SUPT5HO00267 1087 aaKnown RBP24.85■■□□□ 1.57
HDAC6-220ENST00000477528 SHROOM4Q9ULL8 1493 aa24.85■■□□□ 1.57
HDAC6-220ENST00000477528 EHMT2Q96KQ7 1210 aa23.31■■□□□ 1.32
HDAC6-220ENST00000477528 FAM9AQ8IZU1 332 aaPredicted RBP23.19■■□□□ 1.3
HDAC6-220ENST00000477528 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
HDAC6-220ENST00000477528 PCGF6Q9BYE7 350 aa23.15■■□□□ 1.3
HDAC6-220ENST00000477528 CHIC1Q5VXU3 224 aa23.05■■□□□ 1.28
HDAC6-220ENST00000477528 ZCCHC6Q5VYS8 1495 aaKnown RBP22.99■■□□□ 1.27
HDAC6-220ENST00000477528 CCDC180Q9P1Z9 1646 aa22.96■■□□□ 1.27
HDAC6-220ENST00000477528 APLP2Q06481 763 aa22.74■■□□□ 1.23
HDAC6-220ENST00000477528 ABCC9O60706 1549 aa22.68■■□□□ 1.22
HDAC6-220ENST00000477528 ZEB1P37275 1124 aaPredicted RBP22.65■■□□□ 1.22
HDAC6-220ENST00000477528 LOC105371045A0A1W2PR82 267 aa22.62■■□□□ 1.21
HDAC6-220ENST00000477528 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
HDAC6-220ENST00000477528 TTBK1Q5TCY1 1321 aaPredicted RBP22.54■■□□□ 1.2
HDAC6-220ENST00000477528 UBTFP17480 764 aaKnown RBP22.49■■□□□ 1.19
HDAC6-220ENST00000477528 HRCP23327 699 aa22.48■■□□□ 1.19
HDAC6-220ENST00000477528 CCER1Q8TC90 406 aaPredicted RBP22.37■■□□□ 1.17
HDAC6-220ENST00000477528 RANGAP1P46060 587 aaPredicted RBP22.32■■□□□ 1.16
HDAC6-220ENST00000477528 SCRIBQ14160 1630 aa22.28■■□□□ 1.16
HDAC6-220ENST00000477528 PPARGC1BQ86YN6 1023 aaKnown RBP22.24■■□□□ 1.15
HDAC6-220ENST00000477528 DCAF1Q9Y4B6 1507 aa22.14■■□□□ 1.13
HDAC6-220ENST00000477528 PABPN1Q86U42 306 aaKnown RBP eCLIP22.13■■□□□ 1.137e-7■■■□□ 16.1
HDAC6-220ENST00000477528 CENPBP07199 599 aaPredicted RBP21.93■■□□□ 1.1
HDAC6-220ENST00000477528 ATP1B4Q9UN42 357 aaPredicted RBP21.91■■□□□ 1.1
HDAC6-220ENST00000477528 RSF1Q96T23 1441 aaPredicted RBP21.88■■□□□ 1.09
HDAC6-220ENST00000477528 NACADO15069 1562 aa21.85■■□□□ 1.09
HDAC6-220ENST00000477528 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.09
HDAC6-220ENST00000477528 PELP1Q8IZL8 1130 aaKnown RBP21.82■■□□□ 1.08
HDAC6-220ENST00000477528 RB1CC1Q8TDY2 1594 aa21.78■■□□□ 1.08
HDAC6-220ENST00000477528 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.7■■□□□ 1.06
HDAC6-220ENST00000477528 HNRNPUL2Q1KMD3 747 aaKnown RBP21.7■■□□□ 1.06
HDAC6-220ENST00000477528 CSRNP3Q8WYN3 585 aa21.68■■□□□ 1.06
HDAC6-220ENST00000477528 ITGAEP38570 1179 aa21.52■■□□□ 1.04
HDAC6-220ENST00000477528 YTHDC1Q96MU7 727 aaKnown RBP21.49■■□□□ 1.03
HDAC6-220ENST00000477528 CECR2Q9BXF3 1484 aa21.46■■□□□ 1.03
HDAC6-220ENST00000477528 BAZ1AQ9NRL2 1556 aaPredicted RBP21.43■■□□□ 1.02
HDAC6-220ENST00000477528 DIEXFQ68CQ4 756 aaKnown RBP21.39■■□□□ 1.01
HDAC6-220ENST00000477528 MROH2BQ7Z745 1585 aa21.28■■□□□ 1
HDAC6-220ENST00000477528 EEA1Q15075 1411 aa21.28■■□□□ 1
HDAC6-220ENST00000477528 FAM50AQ14320 339 aaKnown RBP21.2■□□□□ 0.98
HDAC6-220ENST00000477528 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.98
HDAC6-220ENST00000477528 BAZ1BQ9UIG0 1483 aaKnown RBP21.14■□□□□ 0.98
HDAC6-220ENST00000477528 CEP162Q5TB80 1403 aa21.12■□□□□ 0.97
HDAC6-220ENST00000477528 GOLGA3Q08378 1498 aa21.12■□□□□ 0.97
HDAC6-220ENST00000477528 ZNF316A6NFI3 1004 aaPredicted RBP21.12■□□□□ 0.97
HDAC6-220ENST00000477528 NEFLP07196 543 aa21.12■□□□□ 0.97
HDAC6-220ENST00000477528 TNIKQ9UKE5 1360 aa21.08■□□□□ 0.96
HDAC6-220ENST00000477528 CLIP1P30622 1438 aa21.07■□□□□ 0.96
HDAC6-220ENST00000477528 WIZO95785 1651 aa21.03■□□□□ 0.96
HDAC6-220ENST00000477528 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
HDAC6-220ENST00000477528 P3H3Q8IVL6 736 aa21■□□□□ 0.95
HDAC6-220ENST00000477528 CEP164Q9UPV0 1460 aa20.97■□□□□ 0.95
HDAC6-220ENST00000477528 TOP2AP11388 1531 aaKnown RBP20.97■□□□□ 0.95
HDAC6-220ENST00000477528 NEUROD1Q13562 356 aa20.94■□□□□ 0.94
HDAC6-220ENST00000477528 SOGA1O94964 1423 aa20.91■□□□□ 0.94
HDAC6-220ENST00000477528 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
HDAC6-220ENST00000477528 TRIM52Q96A61 297 aa20.85■□□□□ 0.93
HDAC6-220ENST00000477528 KIF27Q86VH2 1401 aa20.83■□□□□ 0.92
HDAC6-220ENST00000477528 ACIN1Q9UKV3 1341 aaKnown RBP20.82■□□□□ 0.92
HDAC6-220ENST00000477528 SMARCA4P51532 1647 aa20.82■□□□□ 0.92
HDAC6-220ENST00000477528 GTF3C3Q9Y5Q9 886 aa20.81■□□□□ 0.92
HDAC6-220ENST00000477528 SMARCA2P51531 1590 aa20.81■□□□□ 0.92
HDAC6-220ENST00000477528 POLR3GLQ9BT43 218 aa20.75■□□□□ 0.91
HDAC6-220ENST00000477528 ERICH6Q7L0X2 663 aa20.73■□□□□ 0.91
HDAC6-220ENST00000477528 FBLN2P98095 1184 aa20.69■□□□□ 0.9
HDAC6-220ENST00000477528 ANP32CO43423 234 aa20.65■□□□□ 0.9
HDAC6-220ENST00000477528 ATAD2BQ9ULI0 1458 aa20.63■□□□□ 0.89
HDAC6-220ENST00000477528 MYT1Q01538 1121 aa20.63■□□□□ 0.89
HDAC6-220ENST00000477528 MYT1LQ9UL68 1186 aa20.63■□□□□ 0.89
HDAC6-220ENST00000477528 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
HDAC6-220ENST00000477528 CDK11AQ9UQ88 783 aaPredicted RBP20.61■□□□□ 0.89
HDAC6-220ENST00000477528 VPS8Q8N3P4 1428 aa20.59■□□□□ 0.89
HDAC6-220ENST00000477528 MTUS2Q5JR59 1369 aa20.56■□□□□ 0.88
HDAC6-220ENST00000477528 CNGB1Q14028 1251 aaPredicted RBP20.54■□□□□ 0.88
HDAC6-220ENST00000477528 TONSLQ96HA7 1378 aa20.54■□□□□ 0.88
HDAC6-220ENST00000477528 CUX2O14529 1486 aa20.51■□□□□ 0.87
HDAC6-220ENST00000477528 CARMIL1Q5VZK9 1371 aa20.48■□□□□ 0.87
HDAC6-220ENST00000477528 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.86
HDAC6-220ENST00000477528 ZNF326Q5BKZ1 582 aaKnown RBP20.44■□□□□ 0.86
HDAC6-220ENST00000477528 MIER1Q8N108 512 aa20.44■□□□□ 0.86
HDAC6-220ENST00000477528 RUSC2Q8N2Y8 1516 aa20.44■□□□□ 0.86
HDAC6-220ENST00000477528 ZNF777Q9ULD5 760 aaPredicted RBP20.44■□□□□ 0.86
HDAC6-220ENST00000477528 FHAD1B1AJZ9 1412 aa20.41■□□□□ 0.86
HDAC6-220ENST00000477528 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
HDAC6-220ENST00000477528 CCNB3Q8WWL7 1395 aa20.4■□□□□ 0.86
HDAC6-220ENST00000477528 CHIC2Q9UKJ5 165 aa20.38■□□□□ 0.85
HDAC6-220ENST00000477528 DDX10Q13206 875 aaKnown RBP20.38■□□□□ 0.85
HDAC6-220ENST00000477528 RAPGEF2Q9Y4G8 1499 aa20.37■□□□□ 0.85
HDAC6-220ENST00000477528 BCANQ96GW7 911 aa20.33■□□□□ 0.85
HDAC6-220ENST00000477528 CADPSQ9ULU8 1353 aa20.33■□□□□ 0.85
HDAC6-220ENST00000477528 KANK4Q5T7N3 995 aaPredicted RBP20.31■□□□□ 0.84
HDAC6-220ENST00000477528 CHMP7Q8WUX9 453 aaPredicted RBP20.3■□□□□ 0.84
HDAC6-220ENST00000477528 RRP7BPQ9NSQ0 103 aa20.24■□□□□ 0.83
HDAC6-220ENST00000477528 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
HDAC6-220ENST00000477528 PDS5BQ9NTI5 1447 aa20.17■□□□□ 0.82
HDAC6-220ENST00000477528 SETD5Q9C0A6 1442 aa20.15■□□□□ 0.82
HDAC6-220ENST00000477528 TSPY4P0CV99 314 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms