RNA–Protein interactions for RNA: ENST00000376619.6

HDAC6-203, Transcript of histone deacetylase 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC6, Length 4,179 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-203ENST00000376619 NISCHQ9Y2I1 1504 aa21.39■■□□□ 1.01
HDAC6-203ENST00000376619 DCAF8L2P0C7V8 631 aa20.34■□□□□ 0.85
HDAC6-203ENST00000376619 SHROOM4Q9ULL8 1493 aa19.79■□□□□ 0.76
HDAC6-203ENST00000376619 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
HDAC6-203ENST00000376619 EHMT2Q96KQ7 1210 aa18.97■□□□□ 0.63
HDAC6-203ENST00000376619 ABCC9O60706 1549 aa18.96■□□□□ 0.63
HDAC6-203ENST00000376619 FAM9AQ8IZU1 332 aaPredicted RBP18.49■□□□□ 0.55
HDAC6-203ENST00000376619 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
HDAC6-203ENST00000376619 PCGF6Q9BYE7 350 aa18.23■□□□□ 0.51
HDAC6-203ENST00000376619 TTBK1Q5TCY1 1321 aaPredicted RBP18.2■□□□□ 0.5
HDAC6-203ENST00000376619 PABPN1Q86U42 306 aaKnown RBP eCLIP18.16■□□□□ 0.57e-7■■■□□ 16.1
HDAC6-203ENST00000376619 LOC105371045A0A1W2PR82 267 aa18.08■□□□□ 0.49
HDAC6-203ENST00000376619 PPARGC1BQ86YN6 1023 aaKnown RBP18.01■□□□□ 0.47
HDAC6-203ENST00000376619 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
HDAC6-203ENST00000376619 TRIM41Q8WV44 630 aa17.94■□□□□ 0.46
HDAC6-203ENST00000376619 RANGAP1P46060 587 aaPredicted RBP17.93■□□□□ 0.46
HDAC6-203ENST00000376619 RB1CC1Q8TDY2 1594 aa17.74■□□□□ 0.43
HDAC6-203ENST00000376619 ZCCHC6Q5VYS8 1495 aaKnown RBP17.71■□□□□ 0.43
HDAC6-203ENST00000376619 SCRIBQ14160 1630 aa17.6■□□□□ 0.41
HDAC6-203ENST00000376619 NACADO15069 1562 aa17.6■□□□□ 0.41
HDAC6-203ENST00000376619 UBTFP17480 764 aaKnown RBP17.49■□□□□ 0.39
HDAC6-203ENST00000376619 HRCP23327 699 aa17.32■□□□□ 0.36
HDAC6-203ENST00000376619 CCER1Q8TC90 406 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-203ENST00000376619 APLP2Q06481 763 aa17.28■□□□□ 0.36
HDAC6-203ENST00000376619 ATP1B4Q9UN42 357 aaPredicted RBP17.25■□□□□ 0.35
HDAC6-203ENST00000376619 TRIM26Q12899 539 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-203ENST00000376619 MYO15BQ96JP2 1530 aa17.24■□□□□ 0.35
HDAC6-203ENST00000376619 DCAF1Q9Y4B6 1507 aa17.22■□□□□ 0.35
HDAC6-203ENST00000376619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-203ENST00000376619 DNAJC5BQ9UF47 199 aa17.11■□□□□ 0.33
HDAC6-203ENST00000376619 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.33
HDAC6-203ENST00000376619 ITGAEP38570 1179 aa17.07■□□□□ 0.32
HDAC6-203ENST00000376619 YTHDC1Q96MU7 727 aaKnown RBP16.97■□□□□ 0.31
HDAC6-203ENST00000376619 CECR2Q9BXF3 1484 aa16.91■□□□□ 0.3
HDAC6-203ENST00000376619 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-203ENST00000376619 BICRAQ9NZM4 1560 aa16.84■□□□□ 0.29
HDAC6-203ENST00000376619 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
HDAC6-203ENST00000376619 UNC13AQ9UPW8 1703 aa16.78■□□□□ 0.28
HDAC6-203ENST00000376619 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
HDAC6-203ENST00000376619 P3H3Q8IVL6 736 aa16.7■□□□□ 0.26
HDAC6-203ENST00000376619 EIF4G1Q04637 1599 aaKnown RBP16.69■□□□□ 0.26
HDAC6-203ENST00000376619 BAZ1BQ9UIG0 1483 aaKnown RBP16.65■□□□□ 0.26
HDAC6-203ENST00000376619 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
HDAC6-203ENST00000376619 BAZ1AQ9NRL2 1556 aaPredicted RBP16.62■□□□□ 0.25
HDAC6-203ENST00000376619 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
HDAC6-203ENST00000376619 ARID3CA6NKF2 412 aa16.6■□□□□ 0.25
HDAC6-203ENST00000376619 CNGB1Q14028 1251 aaPredicted RBP16.57■□□□□ 0.24
HDAC6-203ENST00000376619 ATAD2BQ9ULI0 1458 aa16.52■□□□□ 0.23
HDAC6-203ENST00000376619 DIEXFQ68CQ4 756 aaKnown RBP16.52■□□□□ 0.23
HDAC6-203ENST00000376619 ERCC6Q03468 1493 aa16.5■□□□□ 0.23
HDAC6-203ENST00000376619 FAM50AQ14320 339 aaKnown RBP16.5■□□□□ 0.23
HDAC6-203ENST00000376619 CENPBP07199 599 aaPredicted RBP16.46■□□□□ 0.23
HDAC6-203ENST00000376619 SMARCA4P51532 1647 aa16.46■□□□□ 0.23
HDAC6-203ENST00000376619 SMARCA2P51531 1590 aa16.45■□□□□ 0.22
HDAC6-203ENST00000376619 NEUROD1Q13562 356 aa16.44■□□□□ 0.22
HDAC6-203ENST00000376619 WIZO95785 1651 aa16.4■□□□□ 0.22
HDAC6-203ENST00000376619 SOGA1O94964 1423 aa16.37■□□□□ 0.21
HDAC6-203ENST00000376619 FBLN2P98095 1184 aa16.36■□□□□ 0.21
HDAC6-203ENST00000376619 POLR3GLQ9BT43 218 aa16.34■□□□□ 0.21
HDAC6-203ENST00000376619 NCAPD3P42695 1498 aa16.33■□□□□ 0.21
HDAC6-203ENST00000376619 ABCC8Q09428 1581 aa16.33■□□□□ 0.2
HDAC6-203ENST00000376619 CCDC88BA6NC98 1476 aa16.27■□□□□ 0.19
HDAC6-203ENST00000376619 NESP48681 1621 aa16.26■□□□□ 0.19
HDAC6-203ENST00000376619 CEP162Q5TB80 1403 aa16.23■□□□□ 0.19
HDAC6-203ENST00000376619 GTF3C3Q9Y5Q9 886 aa16.22■□□□□ 0.19
HDAC6-203ENST00000376619 CADPSQ9ULU8 1353 aa16.21■□□□□ 0.19
HDAC6-203ENST00000376619 HIRIP3Q9BW71 556 aaPredicted RBP16.21■□□□□ 0.19
HDAC6-203ENST00000376619 WRNQ14191 1432 aaPredicted RBP eCLIP16.19■□□□□ 0.18
HDAC6-203ENST00000376619 PDS5BQ9NTI5 1447 aa16.19■□□□□ 0.18
HDAC6-203ENST00000376619 ZNF316A6NFI3 1004 aaPredicted RBP16.17■□□□□ 0.18
HDAC6-203ENST00000376619 TRIM52Q96A61 297 aa16.17■□□□□ 0.18
HDAC6-203ENST00000376619 RUSC2Q8N2Y8 1516 aa16.16■□□□□ 0.18
HDAC6-203ENST00000376619 CLIP1P30622 1438 aa16.14■□□□□ 0.17
HDAC6-203ENST00000376619 TOP2AP11388 1531 aaKnown RBP16.12■□□□□ 0.17
HDAC6-203ENST00000376619 CHIC2Q9UKJ5 165 aa16.1■□□□□ 0.17
HDAC6-203ENST00000376619 ZNF326Q5BKZ1 582 aaKnown RBP16.09■□□□□ 0.17
HDAC6-203ENST00000376619 BCANQ96GW7 911 aa16.08■□□□□ 0.17
HDAC6-203ENST00000376619 HMGXB3Q12766 1538 aa16.07■□□□□ 0.16
HDAC6-203ENST00000376619 MYT1LQ9UL68 1186 aa16.07■□□□□ 0.16
HDAC6-203ENST00000376619 MIER1Q8N108 512 aa16.04■□□□□ 0.16
HDAC6-203ENST00000376619 ZNF777Q9ULD5 760 aaPredicted RBP16.04■□□□□ 0.16
HDAC6-203ENST00000376619 KANK4Q5T7N3 995 aaPredicted RBP16.03■□□□□ 0.16
HDAC6-203ENST00000376619 FANCD2Q9BXW9 1451 aa16.03■□□□□ 0.16
HDAC6-203ENST00000376619 SCAF1Q9H7N4 1312 aaKnown RBP16.01■□□□□ 0.15
HDAC6-203ENST00000376619 CEP164Q9UPV0 1460 aa16.01■□□□□ 0.15
HDAC6-203ENST00000376619 ACIN1Q9UKV3 1341 aaKnown RBP15.99■□□□□ 0.15
HDAC6-203ENST00000376619 TNIKQ9UKE5 1360 aa15.98■□□□□ 0.15
HDAC6-203ENST00000376619 DDX10Q13206 875 aaKnown RBP15.97■□□□□ 0.15
HDAC6-203ENST00000376619 GOLGA3Q08378 1498 aa15.96■□□□□ 0.15
HDAC6-203ENST00000376619 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
HDAC6-203ENST00000376619 SENP3-EIF4A1A0A087X0R7 540 aa15.94■□□□□ 0.14
HDAC6-203ENST00000376619 PELP1Q8IZL8 1130 aaKnown RBP15.94■□□□□ 0.14
HDAC6-203ENST00000376619 SIN3AQ96ST3 1273 aa15.91■□□□□ 0.14
HDAC6-203ENST00000376619 TDRD9Q8NDG6 1382 aaKnown RBP15.91■□□□□ 0.14
HDAC6-203ENST00000376619 RRP7BPQ9NSQ0 103 aa15.89■□□□□ 0.13
HDAC6-203ENST00000376619 NEFLP07196 543 aa15.88■□□□□ 0.13
HDAC6-203ENST00000376619 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
HDAC6-203ENST00000376619 CFTRP13569 1480 aa15.87■□□□□ 0.13
HDAC6-203ENST00000376619 RAPGEF2Q9Y4G8 1499 aa15.82■□□□□ 0.12
HDAC6-203ENST00000376619 LAMC3Q9Y6N6 1575 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms