Protein–RNA interactions for Protein: Q07955

SRSF1, Serine/arginine-rich splicing factor 1, humanhuman

Known RBP eCLIP

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1Q07955 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.21□□□□□ -0.454e-6■■■■□ 20.2
SRSF1Q07955 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.454e-6■■■■□ 20.2
SRSF1Q07955 PCNP-202ENST00000460231 2165 ntTSL 1 (best)12.18□□□□□ -0.464e-6■■■■□ 20.2
SRSF1Q07955 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.564e-6■■■■□ 20.2
SRSF1Q07955 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC11.05□□□□□ -0.644e-6■■■■□ 20.2
SRSF1Q07955 PCNP-204ENST00000469941 2028 ntTSL 1 (best) BASIC10.48□□□□□ -0.734e-6■■■■□ 20.2
SRSF1Q07955 CASC3-210ENST00000584997 543 ntTSL 310.43□□□□□ -0.744e-6■■■■□ 20.2
SRSF1Q07955 SUCO-209ENST00000610051 2925 ntTSL 2 BASIC9.98□□□□□ -0.814e-6■■■■□ 20.2
SRSF1Q07955 FAM177A1-201ENST00000280987 2927 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.854e-6■■■■□ 20.2
SRSF1Q07955 LRRD1-202ENST00000422722 3511 ntTSL 29.43□□□□□ -0.94e-6■■■■□ 20.2
SRSF1Q07955 FAM177A1-203ENST00000396472 3254 ntAPPRIS ALT2 TSL 5 BASIC9.08□□□□□ -0.964e-6■■■■□ 20.2
SRSF1Q07955 PCNP-206ENST00000486406 742 ntTSL 27.25□□□□□ -1.254e-6■■■■□ 20.2
SRSF1Q07955 TMEM165-208ENST00000511710 731 ntTSL 36.66□□□□□ -1.344e-6■■■■□ 20.2
SRSF1Q07955 RNF149-206ENST00000490553 592 ntTSL 46.46□□□□□ -1.384e-6■■■■□ 20.2
SRSF1Q07955 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC6.45□□□□□ -1.384e-6■■■■□ 20.2
SRSF1Q07955 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.464e-6■■■■□ 20.2
SRSF1Q07955 DDX42-218ENST00000584261 510 ntTSL 35.58□□□□□ -1.523e-6■■■■□ 20.2
SRSF1Q07955 TMEM165-202ENST00000502797 639 ntTSL 35.06□□□□□ -1.64e-6■■■■□ 20.2
SRSF1Q07955 DDX42-206ENST00000578137 857 ntTSL 34.82□□□□□ -1.643e-6■■■■□ 20.2
SRSF1Q07955 FAM177A1-208ENST00000554794 499 ntAPPRIS ALT2 TSL 23.98□□□□□ -1.774e-6■■■■□ 20.2
SRSF1Q07955 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.98□□□□□ -1.774e-6■■■■□ 20.2
SRSF1Q07955 DDX42-211ENST00000580108 545 ntTSL 33.8□□□□□ -1.83e-6■■■■□ 20.2
SRSF1Q07955 RNF149-203ENST00000463726 622 ntTSL 43.35□□□□□ -1.874e-6■■■■□ 20.2
SRSF1Q07955 CYP51A1-203ENST00000435873 556 ntTSL 43.14□□□□□ -1.914e-6■■■■□ 20.2
SRSF1Q07955 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.46■□□□□ 0.234e-83■■■■□ 20.2
SRSF1Q07955 CCDC142-203ENST00000454193 2309 ntTSL 214.73□□□□□ -0.051e-6■■■■□ 20.2
SRSF1Q07955 COL7A1-210ENST00000487017 5807 ntTSL 513.56□□□□□ -0.241e-6■■■■□ 20.2
SRSF1Q07955 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.451e-6■■■■□ 20.2
SRSF1Q07955 METTL3-210ENST00000543235 2124 ntTSL 510.9□□□□□ -0.671e-6■■■■□ 20.2
SRSF1Q07955 METTL3-201ENST00000298717 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.731e-6■■■■□ 20.2
SRSF1Q07955 METTL3-206ENST00000537163 2030 ntTSL 510.24□□□□□ -0.771e-6■■■■□ 20.2
SRSF1Q07955 MTR-202ENST00000366577 10529 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.912e-6■■■■□ 20.1
SRSF1Q07955 MTR-205ENST00000535889 10405 ntTSL 1 (best) BASIC9.1□□□□□ -0.952e-6■■■■□ 20.1
SRSF1Q07955 MTR-203ENST00000463959 1972 ntTSL 57.71□□□□□ -1.182e-6■■■■□ 20.1
SRSF1Q07955 TRIT1-209ENST00000486825 850 ntTSL 514.56□□□□□ -0.086e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-212ENST00000492612 983 ntTSL 512.03□□□□□ -0.486e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.35□□□□□ -0.596e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC10.82□□□□□ -0.686e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-201ENST00000316891 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.696e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-215ENST00000541099 545 ntTSL 1 (best) BASIC10.72□□□□□ -0.696e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-205ENST00000462797 2000 ntTSL 510.42□□□□□ -0.746e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-213ENST00000495175 1156 ntTSL 1 (best)10.02□□□□□ -0.816e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-203ENST00000441669 1851 ntTSL 1 (best) BASIC9.07□□□□□ -0.966e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-211ENST00000491865 738 ntTSL 58.72□□□□□ -1.016e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-210ENST00000489945 861 ntTSL 57.16□□□□□ -1.266e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-208ENST00000469476 773 ntTSL 54.8□□□□□ -1.646e-7■■■■□ 20.1
SRSF1Q07955 TRIT1-206ENST00000465417 499 ntTSL 54.57□□□□□ -1.686e-7■■■■□ 20.1
SRSF1Q07955 LIG1-221ENST00000613670 3949 ntTSL 1 (best) BASIC9.88□□□□□ -0.834e-6■■■■□ 20.1
SRSF1Q07955 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.746e-10■■■■□ 20.1
SRSF1Q07955 TRIM26-269ENST00000480999 3114 ntTSL 29.03□□□□□ -0.966e-10■■■■□ 20.1
SRSF1Q07955 TRIM26-268ENST00000454678 3478 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.026e-10■■■■□ 20.1
SRSF1Q07955 TRIM26-266ENST00000437089 3250 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.096e-10■■■■□ 20.1
SRSF1Q07955 MAFG-203ENST00000574686 570 ntTSL 521.13■□□□□ 0.977e-7■■■■□ 20.1
SRSF1Q07955 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.237e-7■■■■□ 20.1
SRSF1Q07955 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.037e-7■■■■□ 20.1
SRSF1Q07955 PSME4-208ENST00000481518 886 ntTSL 521.82■■□□□ 1.084e-7■■■■□ 20.1
SRSF1Q07955 PSME4-201ENST00000389993 6581 ntTSL 1 (best)11.58□□□□□ -0.564e-7■■■■□ 20.1
SRSF1Q07955 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.664e-7■■■■□ 20.1
SRSF1Q07955 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.78□□□□□ -0.041e-6■■■■□ 20.1
SRSF1Q07955 PRPF31-207ENST00000466404 1837 ntTSL 214.06□□□□□ -0.161e-6■■■■□ 20.1
SRSF1Q07955 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.341e-6■■■■□ 20.1
SRSF1Q07955 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.93□□□□□ -0.341e-6■■■■□ 20.1
SRSF1Q07955 GIGYF1-203ENST00000471340 478 ntTSL 516.12■□□□□ 0.177e-7■■■■□ 20.1
SRSF1Q07955 MALAT1-203ENST00000544868 480 ntTSL 3 BASIC9.82□□□□□ -0.843e-49■■■■□ 20.1
SRSF1Q07955 MAN2C1-230ENST00000566099 1316 ntTSL 520.22■□□□□ 0.839e-7■■■■□ 20
SRSF1Q07955 MAN2C1-219ENST00000564570 803 ntTSL 519.98■□□□□ 0.799e-7■■■■□ 20
SRSF1Q07955 MAN2C1-235ENST00000567163 1356 ntTSL 519.95■□□□□ 0.799e-7■■■■□ 20
SRSF1Q07955 MAN2C1-211ENST00000563368 755 ntTSL 318.72■□□□□ 0.599e-7■■■■□ 20
SRSF1Q07955 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.7■□□□□ 0.589e-7■■■■□ 20
SRSF1Q07955 MAN2C1-240ENST00000569176 966 ntTSL 218.21■□□□□ 0.519e-7■■■■□ 20
SRSF1Q07955 MAN2C1-212ENST00000563441 2664 ntTSL 1 (best)11.68□□□□□ -0.549e-7■■■■□ 20
SRSF1Q07955 MAN2C1-220ENST00000564785 4820 ntTSL 511.05□□□□□ -0.649e-7■■■■□ 20
SRSF1Q07955 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC10.63□□□□□ -0.719e-7■■■■□ 20
SRSF1Q07955 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC10.31□□□□□ -0.769e-7■■■■□ 20
SRSF1Q07955 MAN2C1-201ENST00000267978 3284 ntAPPRIS P1 TSL 1 (best) BASIC9.69□□□□□ -0.869e-7■■■■□ 20
SRSF1Q07955 MAN2C1-224ENST00000565683 3300 ntTSL 1 (best) BASIC9.37□□□□□ -0.919e-7■■■■□ 20
SRSF1Q07955 ARHGEF1-210ENST00000594521 826 ntTSL 516.93■□□□□ 0.35e-7■■■■□ 20
SRSF1Q07955 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)15.03■□□□□ -05e-7■■■■□ 20
SRSF1Q07955 IRF3-214ENST00000596788 447 ntTSL 318.15■□□□□ 0.59e-7■■■■□ 20
SRSF1Q07955 STX16-213ENST00000467096 942 ntTSL 1 (best)11.86□□□□□ -0.519e-7■■■■□ 20
SRSF1Q07955 STX16-219ENST00000496003 815 ntTSL 511.65□□□□□ -0.549e-7■■■■□ 20
SRSF1Q07955 STX16-218ENST00000493301 597 ntTSL 39.31□□□□□ -0.929e-7■■■■□ 20
SRSF1Q07955 STX16-214ENST00000468590 691 ntTSL 59.31□□□□□ -0.929e-7■■■■□ 20
SRSF1Q07955 STX16-206ENST00000371132 4552 ntTSL 1 (best) BASIC7.92□□□□□ -1.149e-7■■■■□ 20
SRSF1Q07955 STX16-203ENST00000358029 4329 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.169e-7■■■■□ 20
SRSF1Q07955 STX16-212ENST00000464640 812 ntTSL 26.92□□□□□ -1.39e-7■■■■□ 20
SRSF1Q07955 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.18■□□□□ 0.181e-6■■■■□ 20
SRSF1Q07955 SSR1-208ENST00000483409 570 ntTSL 412.32□□□□□ -0.441e-6■■■■□ 20
SRSF1Q07955 SSR1-203ENST00000462112 1094 ntTSL 4 BASIC7.36□□□□□ -1.231e-6■■■■□ 20
SRSF1Q07955 SSR1-210ENST00000489567 1893 ntTSL 3 BASIC7.18□□□□□ -1.261e-6■■■■□ 20
SRSF1Q07955 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC6.99□□□□□ -1.291e-6■■■■□ 20
SRSF1Q07955 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.431e-6■■■■□ 20
SRSF1Q07955 SSR1-209ENST00000488834 585 ntTSL 44.38□□□□□ -1.711e-6■■■■□ 20
SRSF1Q07955 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC3.97□□□□□ -1.771e-6■■■■□ 20
SRSF1Q07955 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC8.66□□□□□ -1.027e-6■■■■□ 20
SRSF1Q07955 TIMELESS-205ENST00000557589 2784 ntTSL 27.93□□□□□ -1.147e-6■■■■□ 20
SRSF1Q07955 TIMELESS-201ENST00000229201 4376 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.197e-6■■■■□ 20
SRSF1Q07955 APLP2-213ENST00000529701 573 ntTSL 520.38■□□□□ 0.855e-13■■■■□ 20
SRSF1Q07955 APLP2-208ENST00000526330 582 ntTSL 320.38■□□□□ 0.855e-13■■■■□ 20
SRSF1Q07955 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.93■□□□□ 0.465e-13■■■■□ 20
Retrieved 100 of 14,836 protein–RNA pairs in 162.5 ms