RNA–Protein interactions for RNA: ENST00000483409.1

SSR1-208, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 4

Gene SSR1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-208ENST00000483409 NISCHQ9Y2I1 1504 aa32.56■■■□□ 2.8
SSR1-208ENST00000483409 CCDC180Q9P1Z9 1646 aa28.98■■■□□ 2.23
SSR1-208ENST00000483409 ABCC9O60706 1549 aa28.33■■■□□ 2.13
SSR1-208ENST00000483409 RB1CC1Q8TDY2 1594 aa27.25■■□□□ 1.95
SSR1-208ENST00000483409 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
SSR1-208ENST00000483409 NACADO15069 1562 aa27.2■■□□□ 1.94
SSR1-208ENST00000483409 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
SSR1-208ENST00000483409 MYO15BQ96JP2 1530 aa27■■□□□ 1.91
SSR1-208ENST00000483409 DCAF1Q9Y4B6 1507 aa26.9■■□□□ 1.9
SSR1-208ENST00000483409 UNC13AQ9UPW8 1703 aa26.74■■□□□ 1.87
SSR1-208ENST00000483409 SCRIBQ14160 1630 aa26.48■■□□□ 1.83
SSR1-208ENST00000483409 PABPN1Q86U42 306 aaKnown RBP eCLIP26.47■■□□□ 1.83
SSR1-208ENST00000483409 BICRAQ9NZM4 1560 aa26.44■■□□□ 1.82
SSR1-208ENST00000483409 SHROOM4Q9ULL8 1493 aa26.09■■□□□ 1.77
SSR1-208ENST00000483409 DNAJC5BQ9UF47 199 aa25.96■■□□□ 1.75
SSR1-208ENST00000483409 EIF4G1Q04637 1599 aaKnown RBP25.73■■□□□ 1.71
SSR1-208ENST00000483409 CC2D2AQ9P2K1 1620 aa25.65■■□□□ 1.7
SSR1-208ENST00000483409 CECR2Q9BXF3 1484 aa25.44■■□□□ 1.66
SSR1-208ENST00000483409 SMARCA4P51532 1647 aa25.3■■□□□ 1.64
SSR1-208ENST00000483409 BAZ1AQ9NRL2 1556 aaPredicted RBP25.24■■□□□ 1.63
SSR1-208ENST00000483409 MROH2BQ7Z745 1585 aa25.12■■□□□ 1.61
SSR1-208ENST00000483409 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
SSR1-208ENST00000483409 SMARCA2P51531 1590 aa25.1■■□□□ 1.61
SSR1-208ENST00000483409 NCAPD3P42695 1498 aa25.06■■□□□ 1.6
SSR1-208ENST00000483409 PEG3Q9GZU2 1588 aa25.01■■□□□ 1.59
SSR1-208ENST00000483409 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
SSR1-208ENST00000483409 BAZ1BQ9UIG0 1483 aaKnown RBP24.92■■□□□ 1.58
SSR1-208ENST00000483409 WIZO95785 1651 aa24.89■■□□□ 1.58
SSR1-208ENST00000483409 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
SSR1-208ENST00000483409 TOP2AP11388 1531 aaKnown RBP24.58■■□□□ 1.53
SSR1-208ENST00000483409 NESP48681 1621 aa24.53■■□□□ 1.52
SSR1-208ENST00000483409 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
SSR1-208ENST00000483409 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
SSR1-208ENST00000483409 CADPSQ9ULU8 1353 aa24.34■■□□□ 1.49
SSR1-208ENST00000483409 KIF21AQ7Z4S6 1674 aa24.3■■□□□ 1.48
SSR1-208ENST00000483409 CCDC88BA6NC98 1476 aa24.27■■□□□ 1.48
SSR1-208ENST00000483409 PDS5BQ9NTI5 1447 aa24.25■■□□□ 1.47
SSR1-208ENST00000483409 CFTRP13569 1480 aa24.21■■□□□ 1.47
SSR1-208ENST00000483409 SUPT5HO00267 1087 aaKnown RBP24.21■■□□□ 1.47
SSR1-208ENST00000483409 THOC2Q8NI27 1593 aaKnown RBP24.17■■□□□ 1.46
SSR1-208ENST00000483409 PRDM2Q13029 1718 aa24.16■■□□□ 1.46
SSR1-208ENST00000483409 CUX2O14529 1486 aa24.12■■□□□ 1.45
SSR1-208ENST00000483409 FANCD2Q9BXW9 1451 aa24.1■■□□□ 1.45
SSR1-208ENST00000483409 CEP164Q9UPV0 1460 aa24.08■■□□□ 1.45
SSR1-208ENST00000483409 MRC2Q9UBG0 1479 aa24.03■■□□□ 1.44
SSR1-208ENST00000483409 WDR62O43379 1518 aa23.96■■□□□ 1.43
SSR1-208ENST00000483409 URB2Q14146 1524 aaKnown RBP23.88■■□□□ 1.41
SSR1-208ENST00000483409 TOPBP1Q92547 1522 aa23.73■■□□□ 1.39
SSR1-208ENST00000483409 DNMBPQ6XZF7 1577 aa23.71■■□□□ 1.39
SSR1-208ENST00000483409 ABCC8Q09428 1581 aa23.68■■□□□ 1.38
SSR1-208ENST00000483409 CUX1P39880 1505 aa23.57■■□□□ 1.36
SSR1-208ENST00000483409 IFT140Q96RY7 1462 aa23.55■■□□□ 1.36
SSR1-208ENST00000483409 POLA1P09884 1462 aaPredicted RBP23.52■■□□□ 1.36
SSR1-208ENST00000483409 TARBP1Q13395 1621 aaKnown RBP23.48■■□□□ 1.35
SSR1-208ENST00000483409 FGD5Q6ZNL6 1462 aa23.48■■□□□ 1.35
SSR1-208ENST00000483409 ZNF608Q9ULD9 1512 aaPredicted RBP23.48■■□□□ 1.35
SSR1-208ENST00000483409 RAD54L2Q9Y4B4 1467 aa23.43■■□□□ 1.34
SSR1-208ENST00000483409 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
SSR1-208ENST00000483409 SOGA1O94964 1423 aa23.4■■□□□ 1.34
SSR1-208ENST00000483409 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
SSR1-208ENST00000483409 SYNJ1O43426 1573 aa23.39■■□□□ 1.33
SSR1-208ENST00000483409 BIVM-ERCC5R4GMW8 1640 aa23.38■■□□□ 1.33
SSR1-208ENST00000483409 TOP2BQ02880 1626 aa23.37■■□□□ 1.33
SSR1-208ENST00000483409 WDR97A6NE52 1622 aa23.33■■□□□ 1.33
SSR1-208ENST00000483409 AQRO60306 1485 aaKnown RBP eCLIP23.33■■□□□ 1.332e-16■■■■■ 36.7
SSR1-208ENST00000483409 DNAJC5Q9H3Z4 198 aa23.33■■□□□ 1.33
SSR1-208ENST00000483409 TDRD9Q8NDG6 1382 aaKnown RBP23.27■■□□□ 1.32
SSR1-208ENST00000483409 ABCA10Q8WWZ4 1543 aa23.23■■□□□ 1.31
SSR1-208ENST00000483409 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
SSR1-208ENST00000483409 ABCA5Q8WWZ7 1642 aa23.18■■□□□ 1.3
SSR1-208ENST00000483409 CHD1O14646 1710 aa23.16■■□□□ 1.3
SSR1-208ENST00000483409 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
SSR1-208ENST00000483409 SNAPC4Q5SXM2 1469 aa23.14■■□□□ 1.29
SSR1-208ENST00000483409 GRIN2BQ13224 1484 aa23.13■■□□□ 1.29
SSR1-208ENST00000483409 OSCARQ8IYS5 282 aa23.1■■□□□ 1.29
SSR1-208ENST00000483409 MAGI1Q96QZ7 1491 aaPredicted RBP23.08■■□□□ 1.29
SSR1-208ENST00000483409 FBLN2P98095 1184 aa23.05■■□□□ 1.28
SSR1-208ENST00000483409 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
SSR1-208ENST00000483409 CHMP7Q8WUX9 453 aaPredicted RBP22.96■■□□□ 1.27
SSR1-208ENST00000483409 ERICH3Q5RHP9 1530 aa22.96■■□□□ 1.27
SSR1-208ENST00000483409 ADAMTS12P58397 1594 aa22.96■■□□□ 1.27
SSR1-208ENST00000483409 KIF27Q86VH2 1401 aa22.89■■□□□ 1.25
SSR1-208ENST00000483409 FHAD1B1AJZ9 1412 aa22.86■■□□□ 1.25
SSR1-208ENST00000483409 GRIN2AQ12879 1464 aa22.85■■□□□ 1.25
SSR1-208ENST00000483409 CLASP1Q7Z460 1538 aa22.84■■□□□ 1.25
SSR1-208ENST00000483409 TRIM41Q8WV44 630 aa22.83■■□□□ 1.25
SSR1-208ENST00000483409 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
SSR1-208ENST00000483409 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
SSR1-208ENST00000483409 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
SSR1-208ENST00000483409 CUL7Q14999 1698 aa22.79■■□□□ 1.24
SSR1-208ENST00000483409 ARHGEF11O15085 1522 aa22.78■■□□□ 1.24
SSR1-208ENST00000483409 IGF1RP08069 1367 aa22.77■■□□□ 1.24
SSR1-208ENST00000483409 CEP170Q5SW79 1584 aa22.77■■□□□ 1.24
SSR1-208ENST00000483409 RUSC2Q8N2Y8 1516 aa22.73■■□□□ 1.23
SSR1-208ENST00000483409 NUP160Q12769 1436 aa22.73■■□□□ 1.23
SSR1-208ENST00000483409 CARMIL1Q5VZK9 1371 aa22.66■■□□□ 1.22
SSR1-208ENST00000483409 ARAP1Q96P48 1450 aa22.6■■□□□ 1.21
SSR1-208ENST00000483409 SHROOM2Q13796 1616 aa22.6■■□□□ 1.21
SSR1-208ENST00000483409 CHIC1Q5VXU3 224 aa22.57■■□□□ 1.2
SSR1-208ENST00000483409 ERCC6L2Q5T890 1561 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms