RNA–Protein interactions for RNA: ENST00000460231.5

PCNP-202, Transcript of PEST proteolytic signal containing nuclear protein, humanhuman

TSL 1 (best)

Gene PCNP, Length 2,165 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNP-202ENST00000460231 NISCHQ9Y2I1 1504 aa33.09■■■□□ 2.89
PCNP-202ENST00000460231 CCDC180Q9P1Z9 1646 aa28.77■■■□□ 2.2
PCNP-202ENST00000460231 ZCCHC6Q5VYS8 1495 aaKnown RBP27.75■■■□□ 2.03
PCNP-202ENST00000460231 ABCC9O60706 1549 aa27.7■■■□□ 2.02
PCNP-202ENST00000460231 DCAF8L2P0C7V8 631 aa27.58■■■□□ 2
PCNP-202ENST00000460231 DCAF1Q9Y4B6 1507 aa27.18■■□□□ 1.94
PCNP-202ENST00000460231 SHROOM4Q9ULL8 1493 aa27.14■■□□□ 1.94
PCNP-202ENST00000460231 MYO15BQ96JP2 1530 aa26.89■■□□□ 1.89
PCNP-202ENST00000460231 NACADO15069 1562 aa26.86■■□□□ 1.89
PCNP-202ENST00000460231 RB1CC1Q8TDY2 1594 aa26.7■■□□□ 1.87
PCNP-202ENST00000460231 SCRIBQ14160 1630 aa26.7■■□□□ 1.86
PCNP-202ENST00000460231 UNC13AQ9UPW8 1703 aa26.37■■□□□ 1.81
PCNP-202ENST00000460231 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
PCNP-202ENST00000460231 BICRAQ9NZM4 1560 aa26.11■■□□□ 1.77
PCNP-202ENST00000460231 SUPT5HO00267 1087 aaKnown RBP25.93■■□□□ 1.74
PCNP-202ENST00000460231 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
PCNP-202ENST00000460231 MROH2BQ7Z745 1585 aa25.68■■□□□ 1.7
PCNP-202ENST00000460231 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
PCNP-202ENST00000460231 BAZ1AQ9NRL2 1556 aaPredicted RBP25.48■■□□□ 1.67
PCNP-202ENST00000460231 SMARCA4P51532 1647 aa25.48■■□□□ 1.67
PCNP-202ENST00000460231 WIZO95785 1651 aa25.47■■□□□ 1.67
PCNP-202ENST00000460231 EIF4G1Q04637 1599 aaKnown RBP25.27■■□□□ 1.64
PCNP-202ENST00000460231 ATAD2BQ9ULI0 1458 aa25.13■■□□□ 1.61
PCNP-202ENST00000460231 PEG3Q9GZU2 1588 aa25.09■■□□□ 1.61
PCNP-202ENST00000460231 TOP2AP11388 1531 aaKnown RBP25.03■■□□□ 1.6
PCNP-202ENST00000460231 CC2D2AQ9P2K1 1620 aa24.98■■□□□ 1.59
PCNP-202ENST00000460231 SMARCA2P51531 1590 aa24.97■■□□□ 1.59
PCNP-202ENST00000460231 BAZ1BQ9UIG0 1483 aaKnown RBP24.93■■□□□ 1.58
PCNP-202ENST00000460231 CCDC88BA6NC98 1476 aa24.89■■□□□ 1.57
PCNP-202ENST00000460231 NCAPD3P42695 1498 aa24.87■■□□□ 1.57
PCNP-202ENST00000460231 DNAJC5BQ9UF47 199 aa24.8■■□□□ 1.56
PCNP-202ENST00000460231 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
PCNP-202ENST00000460231 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
PCNP-202ENST00000460231 ABCC8Q09428 1581 aa24.4■■□□□ 1.5
PCNP-202ENST00000460231 NESP48681 1621 aa24.32■■□□□ 1.48
PCNP-202ENST00000460231 CFTRP13569 1480 aa24.3■■□□□ 1.48
PCNP-202ENST00000460231 CADPSQ9ULU8 1353 aa24.25■■□□□ 1.47
PCNP-202ENST00000460231 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
PCNP-202ENST00000460231 SYNJ1O43426 1573 aa24.11■■□□□ 1.45
PCNP-202ENST00000460231 WRNQ14191 1432 aaPredicted RBP eCLIP24.09■■□□□ 1.45
PCNP-202ENST00000460231 PRDM2Q13029 1718 aa24.06■■□□□ 1.44
PCNP-202ENST00000460231 FANCD2Q9BXW9 1451 aa24.02■■□□□ 1.44
PCNP-202ENST00000460231 FAM9AQ8IZU1 332 aaPredicted RBP24.01■■□□□ 1.43
PCNP-202ENST00000460231 LAMC3Q9Y6N6 1575 aa24■■□□□ 1.43
PCNP-202ENST00000460231 CUX1P39880 1505 aa23.99■■□□□ 1.43
PCNP-202ENST00000460231 KIF21AQ7Z4S6 1674 aa23.91■■□□□ 1.42
PCNP-202ENST00000460231 TOP2BQ02880 1626 aa23.9■■□□□ 1.42
PCNP-202ENST00000460231 SOGA1O94964 1423 aa23.9■■□□□ 1.42
PCNP-202ENST00000460231 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.42
PCNP-202ENST00000460231 LOC105371045A0A1W2PR82 267 aa23.87■■□□□ 1.41
PCNP-202ENST00000460231 BIVM-ERCC5R4GMW8 1640 aa23.86■■□□□ 1.41
PCNP-202ENST00000460231 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
PCNP-202ENST00000460231 EHMT2Q96KQ7 1210 aa23.82■■□□□ 1.4
PCNP-202ENST00000460231 PDS5BQ9NTI5 1447 aa23.82■■□□□ 1.4
PCNP-202ENST00000460231 URB2Q14146 1524 aaKnown RBP23.8■■□□□ 1.4
PCNP-202ENST00000460231 TOPBP1Q92547 1522 aa23.75■■□□□ 1.39
PCNP-202ENST00000460231 FGD5Q6ZNL6 1462 aa23.72■■□□□ 1.39
PCNP-202ENST00000460231 DNMBPQ6XZF7 1577 aa23.69■■□□□ 1.38
PCNP-202ENST00000460231 RAD54L2Q9Y4B4 1467 aa23.66■■□□□ 1.38
PCNP-202ENST00000460231 POLA1P09884 1462 aaPredicted RBP23.64■■□□□ 1.38
PCNP-202ENST00000460231 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
PCNP-202ENST00000460231 MRC2Q9UBG0 1479 aa23.58■■□□□ 1.37
PCNP-202ENST00000460231 CSRNP3Q8WYN3 585 aa23.54■■□□□ 1.36
PCNP-202ENST00000460231 THOC2Q8NI27 1593 aaKnown RBP23.52■■□□□ 1.36
PCNP-202ENST00000460231 CUX2O14529 1486 aa23.52■■□□□ 1.36
PCNP-202ENST00000460231 WDR62O43379 1518 aa23.48■■□□□ 1.35
PCNP-202ENST00000460231 EEA1Q15075 1411 aa23.44■■□□□ 1.34
PCNP-202ENST00000460231 TDRD9Q8NDG6 1382 aaKnown RBP23.43■■□□□ 1.34
PCNP-202ENST00000460231 KIF27Q86VH2 1401 aa23.43■■□□□ 1.34
PCNP-202ENST00000460231 ABCA10Q8WWZ4 1543 aa23.43■■□□□ 1.34
PCNP-202ENST00000460231 TARBP1Q13395 1621 aaKnown RBP23.42■■□□□ 1.34
PCNP-202ENST00000460231 WDR97A6NE52 1622 aa23.41■■□□□ 1.34
PCNP-202ENST00000460231 IGF1RP08069 1367 aa23.37■■□□□ 1.33
PCNP-202ENST00000460231 RAPGEF2Q9Y4G8 1499 aa23.37■■□□□ 1.33
PCNP-202ENST00000460231 ZNF608Q9ULD9 1512 aaPredicted RBP23.35■■□□□ 1.33
PCNP-202ENST00000460231 AQRO60306 1485 aaKnown RBP eCLIP23.32■■□□□ 1.327e-14■■■■□ 21.5
PCNP-202ENST00000460231 PRXQ9BXM0 1461 aa23.3■■□□□ 1.32
PCNP-202ENST00000460231 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
PCNP-202ENST00000460231 KIF21BO75037 1637 aa23.28■■□□□ 1.32
PCNP-202ENST00000460231 UBTFP17480 764 aaKnown RBP23.25■■□□□ 1.31
PCNP-202ENST00000460231 GOLGA3Q08378 1498 aa23.24■■□□□ 1.31
PCNP-202ENST00000460231 GAPVD1Q14C86 1478 aa23.24■■□□□ 1.31
PCNP-202ENST00000460231 IFT140Q96RY7 1462 aa23.23■■□□□ 1.31
PCNP-202ENST00000460231 CARMIL1Q5VZK9 1371 aa23.19■■□□□ 1.3
PCNP-202ENST00000460231 RANGAP1P46060 587 aaPredicted RBP23.17■■□□□ 1.3
PCNP-202ENST00000460231 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
PCNP-202ENST00000460231 EIF4G3O43432 1585 aaKnown RBP23.15■■□□□ 1.3
PCNP-202ENST00000460231 PBRM1Q86U86 1689 aa23.13■■□□□ 1.29
PCNP-202ENST00000460231 ERICH3Q5RHP9 1530 aa23.12■■□□□ 1.29
PCNP-202ENST00000460231 CEP162Q5TB80 1403 aa23.1■■□□□ 1.29
PCNP-202ENST00000460231 GRIN2BQ13224 1484 aa23.04■■□□□ 1.28
PCNP-202ENST00000460231 CUL7Q14999 1698 aa23.03■■□□□ 1.28
PCNP-202ENST00000460231 SNAPC4Q5SXM2 1469 aa23.02■■□□□ 1.28
PCNP-202ENST00000460231 ADAMTS12P58397 1594 aa23■■□□□ 1.27
PCNP-202ENST00000460231 FHAD1B1AJZ9 1412 aa22.93■■□□□ 1.26
PCNP-202ENST00000460231 CLIP1P30622 1438 aa22.93■■□□□ 1.26
PCNP-202ENST00000460231 FBLN2P98095 1184 aa22.87■■□□□ 1.25
PCNP-202ENST00000460231 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
PCNP-202ENST00000460231 MAGI1Q96QZ7 1491 aaPredicted RBP22.83■■□□□ 1.25
PCNP-202ENST00000460231 ARHGAP35Q9NRY4 1499 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms