RNA–Protein interactions for RNA: ENST00000397511.6

SSR1-202, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 5 BASIC

Gene SSR1, Length 3,248 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-202ENST00000397511 NISCHQ9Y2I1 1504 aa9.99□□□□□ -0.81
SSR1-202ENST00000397511 AEBP2Q6ZN18 517 aaPredicted RBP9.86□□□□□ -0.83
SSR1-202ENST00000397511 CHIC1Q5VXU3 224 aa9.09□□□□□ -0.95
SSR1-202ENST00000397511 SHROOM4Q9ULL8 1493 aa8.88□□□□□ -0.99
SSR1-202ENST00000397511 SUPT5HO00267 1087 aaKnown RBP8.72□□□□□ -1.01
SSR1-202ENST00000397511 DCAF8L2P0C7V8 631 aa8.7□□□□□ -1.02
SSR1-202ENST00000397511 CCDC180Q9P1Z9 1646 aa8.63□□□□□ -1.03
SSR1-202ENST00000397511 PELP1Q8IZL8 1130 aaKnown RBP8.46□□□□□ -1.06
SSR1-202ENST00000397511 ZCCHC6Q5VYS8 1495 aaKnown RBP8.42□□□□□ -1.06
SSR1-202ENST00000397511 SENP3Q9H4L4 574 aaPredicted RBP8.34□□□□□ -1.07
SSR1-202ENST00000397511 HRCP23327 699 aa8.31□□□□□ -1.08
SSR1-202ENST00000397511 MYO15BQ96JP2 1530 aa8.31□□□□□ -1.08
SSR1-202ENST00000397511 SLC24A1O60721 1099 aa8.3□□□□□ -1.08
SSR1-202ENST00000397511 PHF23Q9BUL5 403 aaPredicted RBP8.3□□□□□ -1.08
SSR1-202ENST00000397511 PCGF6Q9BYE7 350 aa8.24□□□□□ -1.09
SSR1-202ENST00000397511 MYT1Q01538 1121 aa8.24□□□□□ -1.09
SSR1-202ENST00000397511 LOC105371045A0A1W2PR82 267 aa8.23□□□□□ -1.09
SSR1-202ENST00000397511 DCAF1Q9Y4B6 1507 aa8.22□□□□□ -1.09
SSR1-202ENST00000397511 EHMT2Q96KQ7 1210 aa8.19□□□□□ -1.1
SSR1-202ENST00000397511 PPARGC1BQ86YN6 1023 aaKnown RBP8.12□□□□□ -1.11
SSR1-202ENST00000397511 FAM9AQ8IZU1 332 aaPredicted RBP8.12□□□□□ -1.11
SSR1-202ENST00000397511 SCRIBQ14160 1630 aa8.07□□□□□ -1.12
SSR1-202ENST00000397511 ABCC9O60706 1549 aa8.03□□□□□ -1.12
SSR1-202ENST00000397511 POTEDQ86YR6 584 aa8.02□□□□□ -1.13
SSR1-202ENST00000397511 TRIM41Q8WV44 630 aa8.02□□□□□ -1.13
SSR1-202ENST00000397511 NACADO15069 1562 aa7.99□□□□□ -1.13
SSR1-202ENST00000397511 RSF1Q96T23 1441 aaPredicted RBP7.97□□□□□ -1.13
SSR1-202ENST00000397511 SCAF1Q9H7N4 1312 aaKnown RBP7.95□□□□□ -1.14
SSR1-202ENST00000397511 FOXD1Q16676 465 aa7.93□□□□□ -1.14
SSR1-202ENST00000397511 RB1CC1Q8TDY2 1594 aa7.92□□□□□ -1.14
SSR1-202ENST00000397511 TRIM26Q12899 539 aaPredicted RBP7.92□□□□□ -1.14
SSR1-202ENST00000397511 CECR2Q9BXF3 1484 aa7.91□□□□□ -1.14
SSR1-202ENST00000397511 TTBK1Q5TCY1 1321 aaPredicted RBP7.89□□□□□ -1.15
SSR1-202ENST00000397511 MROH2BQ7Z745 1585 aa7.84□□□□□ -1.15
SSR1-202ENST00000397511 WIZO95785 1651 aa7.82□□□□□ -1.16
SSR1-202ENST00000397511 ZEB1P37275 1124 aaPredicted RBP7.8□□□□□ -1.16
SSR1-202ENST00000397511 PABPN1Q86U42 306 aaKnown RBP eCLIP7.78□□□□□ -1.16
SSR1-202ENST00000397511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.75□□□□□ -1.17
SSR1-202ENST00000397511 ACIN1Q9UKV3 1341 aaKnown RBP7.73□□□□□ -1.17
SSR1-202ENST00000397511 ABCC8Q09428 1581 aa7.71□□□□□ -1.17
SSR1-202ENST00000397511 RANGAP1P46060 587 aaPredicted RBP7.71□□□□□ -1.18
SSR1-202ENST00000397511 CCER1Q8TC90 406 aaPredicted RBP7.69□□□□□ -1.18
SSR1-202ENST00000397511 UBTFP17480 764 aaKnown RBP7.69□□□□□ -1.18
SSR1-202ENST00000397511 UNC13AQ9UPW8 1703 aa7.68□□□□□ -1.18
SSR1-202ENST00000397511 CCDC88BA6NC98 1476 aa7.67□□□□□ -1.18
SSR1-202ENST00000397511 DAXXQ9UER7 740 aaPredicted RBP7.66□□□□□ -1.18
SSR1-202ENST00000397511 GTF3C3Q9Y5Q9 886 aa7.66□□□□□ -1.18
SSR1-202ENST00000397511 CENPBP07199 599 aaPredicted RBP7.66□□□□□ -1.18
SSR1-202ENST00000397511 NEUROD1Q13562 356 aa7.66□□□□□ -1.18
SSR1-202ENST00000397511 BAZ1AQ9NRL2 1556 aaPredicted RBP7.65□□□□□ -1.18
SSR1-202ENST00000397511 SOGA1O94964 1423 aa7.65□□□□□ -1.19
SSR1-202ENST00000397511 RUSC2Q8N2Y8 1516 aa7.62□□□□□ -1.19
SSR1-202ENST00000397511 SMARCA4P51532 1647 aa7.6□□□□□ -1.19
SSR1-202ENST00000397511 CSRNP3Q8WYN3 585 aa7.59□□□□□ -1.19
SSR1-202ENST00000397511 BICRAQ9NZM4 1560 aa7.58□□□□□ -1.2
SSR1-202ENST00000397511 TOP2AP11388 1531 aaKnown RBP7.58□□□□□ -1.2
SSR1-202ENST00000397511 SMARCA2P51531 1590 aa7.58□□□□□ -1.2
SSR1-202ENST00000397511 CEP162Q5TB80 1403 aa7.57□□□□□ -1.2
SSR1-202ENST00000397511 HNRNPUL2Q1KMD3 747 aaKnown RBP7.57□□□□□ -1.2
SSR1-202ENST00000397511 EIF4G1Q04637 1599 aaKnown RBP7.56□□□□□ -1.2
SSR1-202ENST00000397511 BCL11AQ9H165 835 aa7.55□□□□□ -1.2
SSR1-202ENST00000397511 DIEXFQ68CQ4 756 aaKnown RBP7.52□□□□□ -1.21
SSR1-202ENST00000397511 PEG3Q9GZU2 1588 aa7.51□□□□□ -1.21
SSR1-202ENST00000397511 WRNQ14191 1432 aaPredicted RBP eCLIP7.51□□□□□ -1.21
SSR1-202ENST00000397511 YTHDC1Q96MU7 727 aaKnown RBP7.5□□□□□ -1.21
SSR1-202ENST00000397511 TNIKQ9UKE5 1360 aa7.49□□□□□ -1.21
SSR1-202ENST00000397511 APLP2Q06481 763 aa7.48□□□□□ -1.21
SSR1-202ENST00000397511 SYNJ1O43426 1573 aa7.45□□□□□ -1.22
SSR1-202ENST00000397511 GOLGA3Q08378 1498 aa7.45□□□□□ -1.22
SSR1-202ENST00000397511 BAZ1BQ9UIG0 1483 aaKnown RBP7.44□□□□□ -1.22
SSR1-202ENST00000397511 NCBP3Q53F19 620 aaKnown RBP7.44□□□□□ -1.22
SSR1-202ENST00000397511 ANP32EQ9BTT0 268 aa7.43□□□□□ -1.22
SSR1-202ENST00000397511 CLIP1P30622 1438 aa7.43□□□□□ -1.22
SSR1-202ENST00000397511 ATAD2BQ9ULI0 1458 aa7.43□□□□□ -1.22
SSR1-202ENST00000397511 ITGAEP38570 1179 aa7.43□□□□□ -1.22
SSR1-202ENST00000397511 RAPGEF2Q9Y4G8 1499 aa7.43□□□□□ -1.22
SSR1-202ENST00000397511 PIAS4Q8N2W9 510 aaPredicted RBP7.42□□□□□ -1.22
SSR1-202ENST00000397511 PRKCSHP14314 528 aaPredicted RBP7.41□□□□□ -1.22
SSR1-202ENST00000397511 EEA1Q15075 1411 aa7.41□□□□□ -1.22
SSR1-202ENST00000397511 MSH5O43196 834 aa7.4□□□□□ -1.22
SSR1-202ENST00000397511 CEP164Q9UPV0 1460 aa7.4□□□□□ -1.23
SSR1-202ENST00000397511 ZNF316A6NFI3 1004 aaPredicted RBP7.39□□□□□ -1.23
SSR1-202ENST00000397511 KANK4Q5T7N3 995 aaPredicted RBP7.37□□□□□ -1.23
SSR1-202ENST00000397511 MIER1Q8N108 512 aa7.37□□□□□ -1.23
SSR1-202ENST00000397511 HMGXB3Q12766 1538 aa7.36□□□□□ -1.23
SSR1-202ENST00000397511 ATP1B4Q9UN42 357 aaPredicted RBP7.36□□□□□ -1.23
SSR1-202ENST00000397511 ERICH6Q7L0X2 663 aa7.35□□□□□ -1.23
SSR1-202ENST00000397511 VPS8Q8N3P4 1428 aa7.35□□□□□ -1.23
SSR1-202ENST00000397511 PLPPR3Q6T4P5 718 aa7.34□□□□□ -1.23
SSR1-202ENST00000397511 NCAPD3P42695 1498 aa7.34□□□□□ -1.23
SSR1-202ENST00000397511 P3H3Q8IVL6 736 aa7.34□□□□□ -1.23
SSR1-202ENST00000397511 RTN4Q9NQC3 1192 aaKnown RBP7.33□□□□□ -1.24
SSR1-202ENST00000397511 CLSPNQ9HAW4 1339 aa7.32□□□□□ -1.24
SSR1-202ENST00000397511 KIF21BO75037 1637 aa7.32□□□□□ -1.24
SSR1-202ENST00000397511 TOP2BQ02880 1626 aa7.29□□□□□ -1.24
SSR1-202ENST00000397511 ARAP1Q96P48 1450 aa7.27□□□□□ -1.25
SSR1-202ENST00000397511 CUX1P39880 1505 aa7.27□□□□□ -1.25
SSR1-202ENST00000397511 TSHZ2Q9NRE2 1034 aa7.27□□□□□ -1.25
SSR1-202ENST00000397511 KIF27Q86VH2 1401 aa7.26□□□□□ -1.25
SSR1-202ENST00000397511 FAM50AQ14320 339 aaKnown RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms