RNA–Protein interactions for RNA: ENST00000488834.5

SSR1-209, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 4

Gene SSR1, Length 585 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-209ENST00000488834 AEBP2Q6ZN18 517 aaPredicted RBP22.48■■□□□ 1.19
SSR1-209ENST00000488834 CHIC1Q5VXU3 224 aa21.47■■□□□ 1.03
SSR1-209ENST00000488834 PHF23Q9BUL5 403 aaPredicted RBP19.03■□□□□ 0.64
SSR1-209ENST00000488834 SENP3Q9H4L4 574 aaPredicted RBP18.81■□□□□ 0.6
SSR1-209ENST00000488834 FOXD1Q16676 465 aa17.69■□□□□ 0.42
SSR1-209ENST00000488834 PLPPR3Q6T4P5 718 aa17.18■□□□□ 0.34
SSR1-209ENST00000488834 PPP6R1Q9UPN7 881 aa16.91■□□□□ 0.3
SSR1-209ENST00000488834 ADRA2BP18089 450 aa16.82■□□□□ 0.28
SSR1-209ENST00000488834 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
SSR1-209ENST00000488834 MSH5O43196 834 aa16.17■□□□□ 0.18
SSR1-209ENST00000488834 POTEDQ86YR6 584 aa15.44■□□□□ 0.06
SSR1-209ENST00000488834 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
SSR1-209ENST00000488834 PPP4R3CPQ6ZMV5 832 aa15.21■□□□□ 0.03
SSR1-209ENST00000488834 DMRT2Q9Y5R5 561 aa15.05■□□□□ -0
SSR1-209ENST00000488834 SCAF1Q9H7N4 1312 aaKnown RBP15□□□□□ -0.01
SSR1-209ENST00000488834 CNKSR2Q8WXI2 1034 aa14.75□□□□□ -0.05
SSR1-209ENST00000488834 KCNA4P22459 653 aa14.65□□□□□ -0.06
SSR1-209ENST00000488834 HOXD11P31277 338 aaPredicted RBP14.62□□□□□ -0.07
SSR1-209ENST00000488834 NCBP3Q53F19 620 aaKnown RBP14.59□□□□□ -0.07
SSR1-209ENST00000488834 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
SSR1-209ENST00000488834 RNF216Q9NWF9 866 aaPredicted RBP14.55□□□□□ -0.08
SSR1-209ENST00000488834 DCAF8L1A6NGE4 600 aa14.37□□□□□ -0.11
SSR1-209ENST00000488834 DNAJC5BQ9UF47 199 aa14.05□□□□□ -0.16
SSR1-209ENST00000488834 RNF39Q9H2S5 420 aa13.99□□□□□ -0.17
SSR1-209ENST00000488834 SLC4A1APQ9BWU0 796 aaKnown RBP13.95□□□□□ -0.18
SSR1-209ENST00000488834 SLC4A2P04920 1241 aa13.91□□□□□ -0.18
SSR1-209ENST00000488834 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.85□□□□□ -0.191e-10■■■□□ 15.2
SSR1-209ENST00000488834 U3KPZ7 1027 aaPredicted RBP13.77□□□□□ -0.21
SSR1-209ENST00000488834 CACNB1Q02641 598 aaPredicted RBP13.74□□□□□ -0.21
SSR1-209ENST00000488834 C1QBPQ07021 282 aaKnown RBP13.66□□□□□ -0.22
SSR1-209ENST00000488834 EHMT2Q96KQ7 1210 aa13.64□□□□□ -0.23
SSR1-209ENST00000488834 ZBTB22O15209 634 aa13.6□□□□□ -0.23
SSR1-209ENST00000488834 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
SSR1-209ENST00000488834 FOXD4L1Q9NU39 408 aa13.43□□□□□ -0.26
SSR1-209ENST00000488834 CSRNP3Q8WYN3 585 aa13.34□□□□□ -0.27
SSR1-209ENST00000488834 MYCNP04198 464 aaPredicted RBP13.32□□□□□ -0.28
SSR1-209ENST00000488834 CAPN15O75808 1086 aa13.3□□□□□ -0.28
SSR1-209ENST00000488834 ATF5Q9Y2D1 282 aaPredicted RBP13.27□□□□□ -0.29
SSR1-209ENST00000488834 DSG3P32926 999 aa13.23□□□□□ -0.29
SSR1-209ENST00000488834 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
SSR1-209ENST00000488834 SAMD1Q6SPF0 538 aaPredicted RBP13.18□□□□□ -0.3
SSR1-209ENST00000488834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
SSR1-209ENST00000488834 ABCB7O75027 752 aa13.15□□□□□ -0.3
SSR1-209ENST00000488834 HNRNPUL2Q1KMD3 747 aaKnown RBP13.15□□□□□ -0.3
SSR1-209ENST00000488834 ZNF219Q9P2Y4 722 aaPredicted RBP13.05□□□□□ -0.32
SSR1-209ENST00000488834 APLP2Q06481 763 aa13.04□□□□□ -0.32
SSR1-209ENST00000488834 ATXN8OSP0DMR3 200 aa12.95□□□□□ -0.34
SSR1-209ENST00000488834 POLA2Q14181 598 aa12.94□□□□□ -0.34
SSR1-209ENST00000488834 MKRN4PQ13434 485 aaPredicted RBP12.65□□□□□ -0.38
SSR1-209ENST00000488834 OSCARQ8IYS5 282 aa12.58□□□□□ -0.4
SSR1-209ENST00000488834 ZBTB12Q9Y330 459 aaPredicted RBP12.47□□□□□ -0.41
SSR1-209ENST00000488834 FBLN2P98095 1184 aa12.41□□□□□ -0.42
SSR1-209ENST00000488834 RBM42Q9BTD8 480 aaKnown RBP12.37□□□□□ -0.43
SSR1-209ENST00000488834 REM2Q8IYK8 340 aaPredicted RBP12.25□□□□□ -0.45
SSR1-209ENST00000488834 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
SSR1-209ENST00000488834 SPDYE2BA6NHP3 402 aa12.23□□□□□ -0.45
SSR1-209ENST00000488834 SPDYE6P0CI01 402 aa12.23□□□□□ -0.45
SSR1-209ENST00000488834 SPDYE2Q495Y8 402 aa12.23□□□□□ -0.45
SSR1-209ENST00000488834 SSUH2Q9Y2M2 353 aa12.22□□□□□ -0.45
SSR1-209ENST00000488834 PITPNM1O00562 1244 aa12.16□□□□□ -0.46
SSR1-209ENST00000488834 ZNF692Q9BU19 519 aaPredicted RBP12.16□□□□□ -0.46
SSR1-209ENST00000488834 FKBP8Q14318 412 aa12.15□□□□□ -0.46
SSR1-209ENST00000488834 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.46
SSR1-209ENST00000488834 SPDYE4A6NLX3 237 aa12.09□□□□□ -0.47
SSR1-209ENST00000488834 POTEHQ6S545 545 aa12.09□□□□□ -0.47
SSR1-209ENST00000488834 PABPN1Q86U42 306 aaKnown RBP eCLIP12.07□□□□□ -0.48
SSR1-209ENST00000488834 PIP4P2Q8N4L2 257 aa12□□□□□ -0.49
SSR1-209ENST00000488834 CLEC11AQ9Y240 323 aa11.94□□□□□ -0.5
SSR1-209ENST00000488834 FXR2P51116 673 aaKnown RBP eCLIP11.93□□□□□ -0.52e-6■■■■□ 20
SSR1-209ENST00000488834 SPDYE1Q8NFV5 336 aaPredicted RBP11.91□□□□□ -0.5
SSR1-209ENST00000488834 PROM2Q8N271 834 aa11.88□□□□□ -0.51
SSR1-209ENST00000488834 CHADLQ6NUI6 762 aa11.83□□□□□ -0.52
SSR1-209ENST00000488834 PRKAR2AP13861 404 aaKnown RBP11.78□□□□□ -0.52
SSR1-209ENST00000488834 PRR29P0C7W0 189 aa11.74□□□□□ -0.53
SSR1-209ENST00000488834 FBXO3Q9UK99 471 aa11.74□□□□□ -0.53
SSR1-209ENST00000488834 EVX2Q03828 476 aa11.73□□□□□ -0.53
SSR1-209ENST00000488834 CREBZFQ9NS37 354 aa11.7□□□□□ -0.54
SSR1-209ENST00000488834 STAG3Q9UJ98 1225 aa11.7□□□□□ -0.54
SSR1-209ENST00000488834 MNX1P50219 401 aaPredicted RBP11.59□□□□□ -0.55
SSR1-209ENST00000488834 HAX1O00165 279 aa11.58□□□□□ -0.56
SSR1-209ENST00000488834 FARP1Q9Y4F1 1045 aaPredicted RBP11.58□□□□□ -0.56
SSR1-209ENST00000488834 C19orf67A6NJJ6 358 aa11.55□□□□□ -0.56
SSR1-209ENST00000488834 VASPP50552 380 aaPredicted RBP11.53□□□□□ -0.56
SSR1-209ENST00000488834 PLCD3Q8N3E9 789 aa11.52□□□□□ -0.57
SSR1-209ENST00000488834 PLEKHG5O94827 1062 aa11.51□□□□□ -0.57
SSR1-209ENST00000488834 MIER1Q8N108 512 aa11.51□□□□□ -0.57
SSR1-209ENST00000488834 SP7Q8TDD2 431 aaPredicted RBP11.48□□□□□ -0.57
SSR1-209ENST00000488834 CD44P16070 742 aaKnown RBP11.41□□□□□ -0.58
SSR1-209ENST00000488834 KLHL34Q8N239 644 aa11.41□□□□□ -0.58
SSR1-209ENST00000488834 ZBTB47Q9UFB7 747 aaPredicted RBP11.38□□□□□ -0.59
SSR1-209ENST00000488834 IFNLR1Q8IU57 520 aaPredicted RBP11.33□□□□□ -0.6
SSR1-209ENST00000488834 RASEFQ8IZ41 740 aa11.31□□□□□ -0.6
SSR1-209ENST00000488834 GABBR2O75899 941 aa11.3□□□□□ -0.6
SSR1-209ENST00000488834 PHF12Q96QT6 1004 aa11.3□□□□□ -0.6
SSR1-209ENST00000488834 ZRANB1Q9UGI0 708 aa11.3□□□□□ -0.6
SSR1-209ENST00000488834 NPM1P06748 294 aaKnown RBP eCLIP11.26□□□□□ -0.61
SSR1-209ENST00000488834 NUBP1P53384 320 aa11.26□□□□□ -0.61
SSR1-209ENST00000488834 ZNF579Q8NAF0 562 aaKnown RBP11.25□□□□□ -0.61
SSR1-209ENST00000488834 SPOCK2Q92563 424 aa11.25□□□□□ -0.61
SSR1-209ENST00000488834 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms