RNA–Protein interactions for RNA: ENST00000619449.1

MALAT1-215, metastasis associated lung adenocarcinoma transcript 1, humanhuman

TSL 3 BASIC

Gene MALAT1, Length 794 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MALAT1-215ENST00000619449 NISCHQ9Y2I1 1504 aa43.9■■■■■ 4.62
MALAT1-215ENST00000619449 CCDC180Q9P1Z9 1646 aa38.89■■■■□ 3.82
MALAT1-215ENST00000619449 ABCC9O60706 1549 aa37.76■■■■□ 3.63
MALAT1-215ENST00000619449 ZCCHC6Q5VYS8 1495 aaKnown RBP36.64■■■■□ 3.46
MALAT1-215ENST00000619449 NACADO15069 1562 aa36.51■■■■□ 3.44
MALAT1-215ENST00000619449 MYO15BQ96JP2 1530 aa36.45■■■■□ 3.43
MALAT1-215ENST00000619449 RB1CC1Q8TDY2 1594 aa36.44■■■■□ 3.42
MALAT1-215ENST00000619449 DCAF1Q9Y4B6 1507 aa36.39■■■■□ 3.42
MALAT1-215ENST00000619449 DCAF8L2P0C7V8 631 aa36.37■■■■□ 3.41
MALAT1-215ENST00000619449 UNC13AQ9UPW8 1703 aa35.67■■■■□ 3.3
MALAT1-215ENST00000619449 SCRIBQ14160 1630 aa35.45■■■■□ 3.27
MALAT1-215ENST00000619449 BICRAQ9NZM4 1560 aa35.44■■■■□ 3.26
MALAT1-215ENST00000619449 PABPN1Q86U42 306 aaKnown RBP eCLIP35.31■■■■□ 3.24
MALAT1-215ENST00000619449 SHROOM4Q9ULL8 1493 aa35.05■■■■□ 3.2
MALAT1-215ENST00000619449 DNAJC5BQ9UF47 199 aa34.52■■■■□ 3.12
MALAT1-215ENST00000619449 EIF4G1Q04637 1599 aaKnown RBP34.42■■■■□ 3.1
MALAT1-215ENST00000619449 CC2D2AQ9P2K1 1620 aa34.2■■■■□ 3.07
MALAT1-215ENST00000619449 CECR2Q9BXF3 1484 aa34.18■■■■□ 3.06
MALAT1-215ENST00000619449 SMARCA4P51532 1647 aa33.99■■■■□ 3.03
MALAT1-215ENST00000619449 BAZ1AQ9NRL2 1556 aaPredicted RBP33.97■■■■□ 3.03
MALAT1-215ENST00000619449 MROH2BQ7Z745 1585 aa33.84■■■■□ 3.01
MALAT1-215ENST00000619449 ATAD2BQ9ULI0 1458 aa33.76■■■■□ 3
MALAT1-215ENST00000619449 NCAPD3P42695 1498 aa33.72■■■□□ 2.99
MALAT1-215ENST00000619449 PEG3Q9GZU2 1588 aa33.72■■■□□ 2.99
MALAT1-215ENST00000619449 SMARCA2P51531 1590 aa33.68■■■□□ 2.98
MALAT1-215ENST00000619449 HMGXB3Q12766 1538 aa33.56■■■□□ 2.96
MALAT1-215ENST00000619449 RSF1Q96T23 1441 aaPredicted RBP33.55■■■□□ 2.96
MALAT1-215ENST00000619449 WIZO95785 1651 aa33.45■■■□□ 2.95
MALAT1-215ENST00000619449 BAZ1BQ9UIG0 1483 aaKnown RBP33.44■■■□□ 2.94
MALAT1-215ENST00000619449 AEBP2Q6ZN18 517 aaPredicted RBP33.24■■■□□ 2.91
MALAT1-215ENST00000619449 TOP2AP11388 1531 aaKnown RBP33.12■■■□□ 2.89
MALAT1-215ENST00000619449 NESP48681 1621 aa32.79■■■□□ 2.84
MALAT1-215ENST00000619449 LAMC3Q9Y6N6 1575 aa32.75■■■□□ 2.83
MALAT1-215ENST00000619449 CCDC88BA6NC98 1476 aa32.74■■■□□ 2.83
MALAT1-215ENST00000619449 SUPT5HO00267 1087 aaKnown RBP32.74■■■□□ 2.83
MALAT1-215ENST00000619449 CADPSQ9ULU8 1353 aa32.71■■■□□ 2.83
MALAT1-215ENST00000619449 CFTRP13569 1480 aa32.61■■■□□ 2.81
MALAT1-215ENST00000619449 PDS5BQ9NTI5 1447 aa32.48■■■□□ 2.79
MALAT1-215ENST00000619449 ERCC6Q03468 1493 aa32.46■■■□□ 2.79
MALAT1-215ENST00000619449 KIF21AQ7Z4S6 1674 aa32.39■■■□□ 2.78
MALAT1-215ENST00000619449 PRDM2Q13029 1718 aa32.33■■■□□ 2.77
MALAT1-215ENST00000619449 FANCD2Q9BXW9 1451 aa32.31■■■□□ 2.76
MALAT1-215ENST00000619449 THOC2Q8NI27 1593 aaKnown RBP32.26■■■□□ 2.75
MALAT1-215ENST00000619449 CEP164Q9UPV0 1460 aa32.23■■■□□ 2.75
MALAT1-215ENST00000619449 MRC2Q9UBG0 1479 aa32.15■■■□□ 2.74
MALAT1-215ENST00000619449 CUX2O14529 1486 aa32.11■■■□□ 2.73
MALAT1-215ENST00000619449 WDR62O43379 1518 aa32.07■■■□□ 2.72
MALAT1-215ENST00000619449 URB2Q14146 1524 aaKnown RBP32.02■■■□□ 2.72
MALAT1-215ENST00000619449 TOPBP1Q92547 1522 aa31.85■■■□□ 2.69
MALAT1-215ENST00000619449 ABCC8Q09428 1581 aa31.83■■■□□ 2.69
MALAT1-215ENST00000619449 DNMBPQ6XZF7 1577 aa31.82■■■□□ 2.68
MALAT1-215ENST00000619449 CUX1P39880 1505 aa31.73■■■□□ 2.67
MALAT1-215ENST00000619449 CHIC1Q5VXU3 224 aa31.62■■■□□ 2.65
MALAT1-215ENST00000619449 POLA1P09884 1462 aaPredicted RBP31.6■■■□□ 2.65
MALAT1-215ENST00000619449 WRNQ14191 1432 aaPredicted RBP eCLIP31.58■■■□□ 2.65
MALAT1-215ENST00000619449 IFT140Q96RY7 1462 aa31.56■■■□□ 2.64
MALAT1-215ENST00000619449 FGD5Q6ZNL6 1462 aa31.54■■■□□ 2.64
MALAT1-215ENST00000619449 TARBP1Q13395 1621 aaKnown RBP31.52■■■□□ 2.64
MALAT1-215ENST00000619449 SYNJ1O43426 1573 aa31.51■■■□□ 2.64
MALAT1-215ENST00000619449 TOP2BQ02880 1626 aa31.51■■■□□ 2.63
MALAT1-215ENST00000619449 BIVM-ERCC5R4GMW8 1640 aa31.51■■■□□ 2.63
MALAT1-215ENST00000619449 RAD54L2Q9Y4B4 1467 aa31.45■■■□□ 2.62
MALAT1-215ENST00000619449 SOGA1O94964 1423 aa31.44■■■□□ 2.62
MALAT1-215ENST00000619449 ZNF608Q9ULD9 1512 aaPredicted RBP31.43■■■□□ 2.62
MALAT1-215ENST00000619449 WDR97A6NE52 1622 aa31.31■■■□□ 2.6
MALAT1-215ENST00000619449 EIF4G3O43432 1585 aaKnown RBP31.29■■■□□ 2.6
MALAT1-215ENST00000619449 ABCA10Q8WWZ4 1543 aa31.29■■■□□ 2.6
MALAT1-215ENST00000619449 AQRO60306 1485 aaKnown RBP eCLIP31.27■■■□□ 2.6
MALAT1-215ENST00000619449 TDRD9Q8NDG6 1382 aaKnown RBP31.23■■■□□ 2.59
MALAT1-215ENST00000619449 ABCA5Q8WWZ7 1642 aa31.13■■■□□ 2.57
MALAT1-215ENST00000619449 GAPVD1Q14C86 1478 aa31.08■■■□□ 2.57
MALAT1-215ENST00000619449 GRIN2BQ13224 1484 aa31.05■■■□□ 2.56
MALAT1-215ENST00000619449 PBRM1Q86U86 1689 aa31■■■□□ 2.55
MALAT1-215ENST00000619449 SNAPC4Q5SXM2 1469 aa30.96■■■□□ 2.55
MALAT1-215ENST00000619449 MAGI1Q96QZ7 1491 aaPredicted RBP30.95■■■□□ 2.54
MALAT1-215ENST00000619449 TRIM41Q8WV44 630 aa30.93■■■□□ 2.54
MALAT1-215ENST00000619449 ERICH3Q5RHP9 1530 aa30.9■■■□□ 2.54
MALAT1-215ENST00000619449 KIF27Q86VH2 1401 aa30.88■■■□□ 2.53
MALAT1-215ENST00000619449 DNAJC5Q9H3Z4 198 aa30.83■■■□□ 2.53
MALAT1-215ENST00000619449 CHD1O14646 1710 aa30.83■■■□□ 2.53
MALAT1-215ENST00000619449 SYNJ2O15056 1496 aa30.82■■■□□ 2.53
MALAT1-215ENST00000619449 ADAMTS12P58397 1594 aa30.8■■■□□ 2.52
MALAT1-215ENST00000619449 IGF1RP08069 1367 aa30.79■■■□□ 2.52
MALAT1-215ENST00000619449 OSCARQ8IYS5 282 aa30.78■■■□□ 2.52
MALAT1-215ENST00000619449 FHAD1B1AJZ9 1412 aa30.74■■■□□ 2.51
MALAT1-215ENST00000619449 RUSC2Q8N2Y8 1516 aa30.74■■■□□ 2.51
MALAT1-215ENST00000619449 FBLN2P98095 1184 aa30.71■■■□□ 2.51
MALAT1-215ENST00000619449 CHMP7Q8WUX9 453 aaPredicted RBP30.71■■■□□ 2.51
MALAT1-215ENST00000619449 GRIN2AQ12879 1464 aa30.67■■■□□ 2.5
MALAT1-215ENST00000619449 CUL7Q14999 1698 aa30.64■■■□□ 2.5
MALAT1-215ENST00000619449 CLASP1Q7Z460 1538 aa30.57■■■□□ 2.48
MALAT1-215ENST00000619449 NUP160Q12769 1436 aa30.56■■■□□ 2.48
MALAT1-215ENST00000619449 CARMIL1Q5VZK9 1371 aa30.56■■■□□ 2.48
MALAT1-215ENST00000619449 CEP170Q5SW79 1584 aa30.52■■■□□ 2.48
MALAT1-215ENST00000619449 EEA1Q15075 1411 aa30.47■■■□□ 2.47
MALAT1-215ENST00000619449 PRXQ9BXM0 1461 aa30.43■■■□□ 2.46
MALAT1-215ENST00000619449 RAPGEF2Q9Y4G8 1499 aa30.41■■■□□ 2.46
MALAT1-215ENST00000619449 CSRNP3Q8WYN3 585 aa30.39■■■□□ 2.46
MALAT1-215ENST00000619449 ARHGEF11O15085 1522 aa30.33■■■□□ 2.45
MALAT1-215ENST00000619449 RIMBP3CA6NJZ7 1639 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 749.5 ms