RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 PELP1Q8IZL8 1130 aaKnown RBP23.72■■□□□ 1.39
COL7A1-201ENST00000328333 MYT1Q01538 1121 aa23.04■■□□□ 1.28
COL7A1-201ENST00000328333 DCAF8L2P0C7V8 631 aa22.56■■□□□ 1.2
COL7A1-201ENST00000328333 CCER1Q8TC90 406 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-201ENST00000328333 CENPBP07199 599 aaPredicted RBP22.23■■□□□ 1.15
COL7A1-201ENST00000328333 ERICH6Q7L0X2 663 aa22.2■■□□□ 1.14
COL7A1-201ENST00000328333 ZEB1P37275 1124 aaPredicted RBP22.02■■□□□ 1.12
COL7A1-201ENST00000328333 SUPT5HO00267 1087 aaKnown RBP21.98■■□□□ 1.11
COL7A1-201ENST00000328333 APLP2Q06481 763 aa21.95■■□□□ 1.11
COL7A1-201ENST00000328333 NISCHQ9Y2I1 1504 aa21.84■■□□□ 1.09
COL7A1-201ENST00000328333 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
COL7A1-201ENST00000328333 NEFLP07196 543 aa21.65■■□□□ 1.06
COL7A1-201ENST00000328333 FAM9AQ8IZU1 332 aaPredicted RBP21.62■■□□□ 1.05
COL7A1-201ENST00000328333 TTBK1Q5TCY1 1321 aaPredicted RBP21.4■■□□□ 1.02
COL7A1-201ENST00000328333 PCGF6Q9BYE7 350 aa21.38■■□□□ 1.01
COL7A1-201ENST00000328333 SHROOM4Q9ULL8 1493 aa21.26■□□□□ 0.99
COL7A1-201ENST00000328333 DAXXQ9UER7 740 aaPredicted RBP21.23■□□□□ 0.99
COL7A1-201ENST00000328333 EHMT2Q96KQ7 1210 aa21.08■□□□□ 0.96
COL7A1-201ENST00000328333 RTL5Q5HYW3 569 aaPredicted RBP20.89■□□□□ 0.93
COL7A1-201ENST00000328333 TRIM41Q8WV44 630 aa20.68■□□□□ 0.9
COL7A1-201ENST00000328333 TRIM26Q12899 539 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-201ENST00000328333 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-201ENST00000328333 HRCP23327 699 aa20.58■□□□□ 0.88
COL7A1-201ENST00000328333 UBTFP17480 764 aaKnown RBP20.48■□□□□ 0.87
COL7A1-201ENST00000328333 GLIPR1L2Q4G1C9 344 aa20.33■□□□□ 0.85
COL7A1-201ENST00000328333 CLSPNQ9HAW4 1339 aa20.31■□□□□ 0.84
COL7A1-201ENST00000328333 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
COL7A1-201ENST00000328333 ATP1B4Q9UN42 357 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-201ENST00000328333 DIEXFQ68CQ4 756 aaKnown RBP20.17■□□□□ 0.82
COL7A1-201ENST00000328333 RANGAP1P46060 587 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-201ENST00000328333 CDK11AQ9UQ88 783 aaPredicted RBP20.1■□□□□ 0.81
COL7A1-201ENST00000328333 ANP32BQ92688 251 aaKnown RBP19.99■□□□□ 0.79
COL7A1-201ENST00000328333 ANP32AP39687 249 aaKnown RBP19.98■□□□□ 0.79
COL7A1-201ENST00000328333 ZBTB47Q9UFB7 747 aaPredicted RBP19.91■□□□□ 0.78
COL7A1-201ENST00000328333 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
COL7A1-201ENST00000328333 GTF3C3Q9Y5Q9 886 aa19.82■□□□□ 0.76
COL7A1-201ENST00000328333 ANP32CO43423 234 aa19.79■□□□□ 0.76
COL7A1-201ENST00000328333 EIF5BO60841 1220 aaKnown RBP19.68■□□□□ 0.74
COL7A1-201ENST00000328333 ITGAEP38570 1179 aa19.64■□□□□ 0.73
COL7A1-201ENST00000328333 HNRNPUL2Q1KMD3 747 aaKnown RBP19.63■□□□□ 0.73
COL7A1-201ENST00000328333 PPARGC1BQ86YN6 1023 aaKnown RBP19.62■□□□□ 0.73
COL7A1-201ENST00000328333 UPF2Q9HAU5 1272 aaKnown RBP19.61■□□□□ 0.73
COL7A1-201ENST00000328333 ACIN1Q9UKV3 1341 aaKnown RBP19.61■□□□□ 0.73
COL7A1-201ENST00000328333 NEFMP07197 916 aa19.61■□□□□ 0.73
COL7A1-201ENST00000328333 CANXP27824 592 aaKnown RBP19.59■□□□□ 0.73
COL7A1-201ENST00000328333 SLC4A1APQ9BWU0 796 aaKnown RBP19.56■□□□□ 0.72
COL7A1-201ENST00000328333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.54■□□□□ 0.72
COL7A1-201ENST00000328333 HSP90AA1P07900 732 aaKnown RBP19.51■□□□□ 0.71
COL7A1-201ENST00000328333 TNNT2P45379 298 aaPredicted RBP19.47■□□□□ 0.71
COL7A1-201ENST00000328333 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
COL7A1-201ENST00000328333 ANP32EQ9BTT0 268 aa19.46■□□□□ 0.71
COL7A1-201ENST00000328333 BCANQ96GW7 911 aa19.46■□□□□ 0.71
COL7A1-201ENST00000328333 CNGB1Q14028 1251 aaPredicted RBP19.4■□□□□ 0.7
COL7A1-201ENST00000328333 FAM50AQ14320 339 aaKnown RBP19.31■□□□□ 0.68
COL7A1-201ENST00000328333 LOC105371045A0A1W2PR82 267 aa19.29■□□□□ 0.68
COL7A1-201ENST00000328333 DCAF1Q9Y4B6 1507 aa19.27■□□□□ 0.68
COL7A1-201ENST00000328333 TRIM52Q96A61 297 aa19.24■□□□□ 0.67
COL7A1-201ENST00000328333 TRIM44Q96DX7 344 aaPredicted RBP19.23■□□□□ 0.67
COL7A1-201ENST00000328333 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.2■□□□□ 0.66
COL7A1-201ENST00000328333 NPM2Q86SE8 214 aaKnown RBP19.19■□□□□ 0.66
COL7A1-201ENST00000328333 DDRGK1Q96HY6 314 aa19.18■□□□□ 0.66
COL7A1-201ENST00000328333 NEUROD1Q13562 356 aa19.18■□□□□ 0.66
COL7A1-201ENST00000328333 CCDC180Q9P1Z9 1646 aa19.18■□□□□ 0.66
COL7A1-201ENST00000328333 BECN1Q14457 450 aa19.15■□□□□ 0.66
COL7A1-201ENST00000328333 ERICH6BQ5W0A0 696 aa19.14■□□□□ 0.66
COL7A1-201ENST00000328333 NCLP19338 710 aaKnown RBP19.11■□□□□ 0.65
COL7A1-201ENST00000328333 CDK11BP21127 795 aaKnown RBP19.1■□□□□ 0.65
COL7A1-201ENST00000328333 GOLGA6L22H0YM25 854 aa19.09■□□□□ 0.65
COL7A1-201ENST00000328333 FKBP8Q14318 412 aa19.09■□□□□ 0.65
COL7A1-201ENST00000328333 CCDC136Q96JN2 1154 aa19.07■□□□□ 0.64
COL7A1-201ENST00000328333 TONSLQ96HA7 1378 aa19.05■□□□□ 0.64
COL7A1-201ENST00000328333 ZNF326Q5BKZ1 582 aaKnown RBP19.05■□□□□ 0.64
COL7A1-201ENST00000328333 NBR1Q14596 966 aa19.03■□□□□ 0.64
COL7A1-201ENST00000328333 MYH16Q9H6N6 1097 aa18.97■□□□□ 0.63
COL7A1-201ENST00000328333 HNRNPUQ00839 825 aaKnown RBP eCLIP18.96■□□□□ 0.63
COL7A1-201ENST00000328333 SLC24A1O60721 1099 aa18.93■□□□□ 0.62
COL7A1-201ENST00000328333 PPM1GO15355 546 aaPredicted RBP18.9■□□□□ 0.62
COL7A1-201ENST00000328333 BCL11AQ9H165 835 aa18.86■□□□□ 0.61
COL7A1-201ENST00000328333 GOLGA6L6A8MZA4 724 aa18.84■□□□□ 0.61
COL7A1-201ENST00000328333 ZRSR1Q15695 479 aaKnown RBP18.84■□□□□ 0.61
COL7A1-201ENST00000328333 NRDCO43847 1150 aa18.82■□□□□ 0.6
COL7A1-201ENST00000328333 CHAF1AQ13111 956 aaPredicted RBP18.81■□□□□ 0.6
COL7A1-201ENST00000328333 TMC1Q8TDI8 760 aa18.79■□□□□ 0.6
COL7A1-201ENST00000328333 PTMAP06454 111 aaKnown RBP18.79■□□□□ 0.6
COL7A1-201ENST00000328333 CASC1Q6TDU7 716 aa18.78■□□□□ 0.6
COL7A1-201ENST00000328333 DNTTIP2Q5QJE6 756 aaKnown RBP18.76■□□□□ 0.59
COL7A1-201ENST00000328333 WDR43Q15061 677 aaKnown RBP eCLIP18.74■□□□□ 0.59
COL7A1-201ENST00000328333 NAP1L5Q96NT1 182 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-201ENST00000328333 ARXQ96QS3 562 aa18.72■□□□□ 0.59
COL7A1-201ENST00000328333 SCAF1Q9H7N4 1312 aaKnown RBP18.7■□□□□ 0.58
COL7A1-201ENST00000328333 L1TD1Q5T7N2 865 aaKnown RBP18.68■□□□□ 0.58
COL7A1-201ENST00000328333 FAM9BQ8IZU0 186 aa18.67■□□□□ 0.58
COL7A1-201ENST00000328333 MRS2Q9HD23 443 aa18.64■□□□□ 0.58
COL7A1-201ENST00000328333 CHMP4BQ9H444 224 aaKnown RBP18.64■□□□□ 0.57
COL7A1-201ENST00000328333 PTMSP20962 102 aa18.63■□□□□ 0.57
COL7A1-201ENST00000328333 NOP58Q9Y2X3 529 aaKnown RBP18.62■□□□□ 0.57
COL7A1-201ENST00000328333 MSNP26038 577 aaKnown RBP18.57■□□□□ 0.56
COL7A1-201ENST00000328333 DDX10Q13206 875 aaKnown RBP18.57■□□□□ 0.56
COL7A1-201ENST00000328333 CFAP44Q96MT7 982 aa18.56■□□□□ 0.56
COL7A1-201ENST00000328333 ARID4BQ4LE39 1312 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms