RNA–Protein interactions for RNA: ENST00000474597.5

SSR1-204, Transcript of signal sequence receptor subunit 1, humanhuman

TSL 5 BASIC

Gene SSR1, Length 1,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1-204ENST00000474597 NISCHQ9Y2I1 1504 aa44.65■■■■■ 4.74
SSR1-204ENST00000474597 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
SSR1-204ENST00000474597 ZCCHC6Q5VYS8 1495 aaKnown RBP37.51■■■■□ 3.6
SSR1-204ENST00000474597 DCAF8L2P0C7V8 631 aa36.99■■■■□ 3.51
SSR1-204ENST00000474597 DCAF1Q9Y4B6 1507 aa36.9■■■■□ 3.5
SSR1-204ENST00000474597 ABCC9O60706 1549 aa36.82■■■■□ 3.48
SSR1-204ENST00000474597 SHROOM4Q9ULL8 1493 aa36.52■■■■□ 3.44
SSR1-204ENST00000474597 MYO15BQ96JP2 1530 aa36.45■■■■□ 3.43
SSR1-204ENST00000474597 NACADO15069 1562 aa36.27■■■■□ 3.4
SSR1-204ENST00000474597 RB1CC1Q8TDY2 1594 aa35.98■■■■□ 3.35
SSR1-204ENST00000474597 SCRIBQ14160 1630 aa35.86■■■■□ 3.33
SSR1-204ENST00000474597 UNC13AQ9UPW8 1703 aa35.26■■■■□ 3.24
SSR1-204ENST00000474597 SUPT5HO00267 1087 aaKnown RBP35.17■■■■□ 3.22
SSR1-204ENST00000474597 BICRAQ9NZM4 1560 aa34.82■■■■□ 3.16
SSR1-204ENST00000474597 PABPN1Q86U42 306 aaKnown RBP eCLIP34.73■■■■□ 3.15
SSR1-204ENST00000474597 CECR2Q9BXF3 1484 aa34.68■■■■□ 3.14
SSR1-204ENST00000474597 RSF1Q96T23 1441 aaPredicted RBP34.64■■■■□ 3.14
SSR1-204ENST00000474597 BAZ1AQ9NRL2 1556 aaPredicted RBP34.51■■■■□ 3.12
SSR1-204ENST00000474597 MROH2BQ7Z745 1585 aa34.5■■■■□ 3.11
SSR1-204ENST00000474597 SMARCA4P51532 1647 aa34.35■■■■□ 3.09
SSR1-204ENST00000474597 WIZO95785 1651 aa34.26■■■■□ 3.07
SSR1-204ENST00000474597 TOP2AP11388 1531 aaKnown RBP33.89■■■■□ 3.02
SSR1-204ENST00000474597 PEG3Q9GZU2 1588 aa33.88■■■■□ 3.01
SSR1-204ENST00000474597 EIF4G1Q04637 1599 aaKnown RBP33.81■■■■□ 3
SSR1-204ENST00000474597 SMARCA2P51531 1590 aa33.78■■■■□ 3
SSR1-204ENST00000474597 ATAD2BQ9ULI0 1458 aa33.75■■■□□ 2.99
SSR1-204ENST00000474597 CHIC1Q5VXU3 224 aa33.62■■■□□ 2.97
SSR1-204ENST00000474597 BAZ1BQ9UIG0 1483 aaKnown RBP33.61■■■□□ 2.97
SSR1-204ENST00000474597 CCDC88BA6NC98 1476 aa33.53■■■□□ 2.96
SSR1-204ENST00000474597 NCAPD3P42695 1498 aa33.43■■■□□ 2.94
SSR1-204ENST00000474597 HMGXB3Q12766 1538 aa33.42■■■□□ 2.94
SSR1-204ENST00000474597 CC2D2AQ9P2K1 1620 aa33.32■■■□□ 2.92
SSR1-204ENST00000474597 TRIM41Q8WV44 630 aa33.07■■■□□ 2.88
SSR1-204ENST00000474597 ABCC8Q09428 1581 aa32.86■■■□□ 2.85
SSR1-204ENST00000474597 CFTRP13569 1480 aa32.71■■■□□ 2.83
SSR1-204ENST00000474597 WRNQ14191 1432 aaPredicted RBP eCLIP32.65■■■□□ 2.82
SSR1-204ENST00000474597 PRDM2Q13029 1718 aa32.64■■■□□ 2.82
SSR1-204ENST00000474597 CADPSQ9ULU8 1353 aa32.61■■■□□ 2.81
SSR1-204ENST00000474597 SYNJ1O43426 1573 aa32.5■■■□□ 2.79
SSR1-204ENST00000474597 FAM9AQ8IZU1 332 aaPredicted RBP32.47■■■□□ 2.79
SSR1-204ENST00000474597 TOP2BQ02880 1626 aa32.38■■■□□ 2.77
SSR1-204ENST00000474597 DNAJC5BQ9UF47 199 aa32.37■■■□□ 2.77
SSR1-204ENST00000474597 LOC105371045A0A1W2PR82 267 aa32.35■■■□□ 2.77
SSR1-204ENST00000474597 LAMC3Q9Y6N6 1575 aa32.35■■■□□ 2.77
SSR1-204ENST00000474597 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
SSR1-204ENST00000474597 NESP48681 1621 aa32.31■■■□□ 2.76
SSR1-204ENST00000474597 FANCD2Q9BXW9 1451 aa32.27■■■□□ 2.76
SSR1-204ENST00000474597 CUX1P39880 1505 aa32.26■■■□□ 2.75
SSR1-204ENST00000474597 SOGA1O94964 1423 aa32.22■■■□□ 2.75
SSR1-204ENST00000474597 EEA1Q15075 1411 aa32.22■■■□□ 2.75
SSR1-204ENST00000474597 PDS5BQ9NTI5 1447 aa32.1■■■□□ 2.73
SSR1-204ENST00000474597 RUSC2Q8N2Y8 1516 aa32.09■■■□□ 2.73
SSR1-204ENST00000474597 CEP164Q9UPV0 1460 aa32.09■■■□□ 2.73
SSR1-204ENST00000474597 EHMT2Q96KQ7 1210 aa32.05■■■□□ 2.72
SSR1-204ENST00000474597 CSRNP3Q8WYN3 585 aa32.03■■■□□ 2.72
SSR1-204ENST00000474597 DNMBPQ6XZF7 1577 aa31.99■■■□□ 2.71
SSR1-204ENST00000474597 KIF21AQ7Z4S6 1674 aa31.97■■■□□ 2.71
SSR1-204ENST00000474597 FGD5Q6ZNL6 1462 aa31.93■■■□□ 2.7
SSR1-204ENST00000474597 TOPBP1Q92547 1522 aa31.92■■■□□ 2.7
SSR1-204ENST00000474597 KIF27Q86VH2 1401 aa31.84■■■□□ 2.69
SSR1-204ENST00000474597 URB2Q14146 1524 aaKnown RBP31.84■■■□□ 2.69
SSR1-204ENST00000474597 KIF21BO75037 1637 aa31.79■■■□□ 2.68
SSR1-204ENST00000474597 GOLGA3Q08378 1498 aa31.78■■■□□ 2.68
SSR1-204ENST00000474597 POLA1P09884 1462 aaPredicted RBP31.75■■■□□ 2.67
SSR1-204ENST00000474597 CUX2O14529 1486 aa31.75■■■□□ 2.67
SSR1-204ENST00000474597 UBTFP17480 764 aaKnown RBP31.69■■■□□ 2.66
SSR1-204ENST00000474597 MRC2Q9UBG0 1479 aa31.67■■■□□ 2.66
SSR1-204ENST00000474597 TNIKQ9UKE5 1360 aa31.66■■■□□ 2.66
SSR1-204ENST00000474597 RAD54L2Q9Y4B4 1467 aa31.66■■■□□ 2.66
SSR1-204ENST00000474597 ABCA10Q8WWZ4 1543 aa31.63■■■□□ 2.65
SSR1-204ENST00000474597 ERCC6Q03468 1493 aa31.62■■■□□ 2.65
SSR1-204ENST00000474597 RAPGEF2Q9Y4G8 1499 aa31.58■■■□□ 2.65
SSR1-204ENST00000474597 PRXQ9BXM0 1461 aa31.57■■■□□ 2.64
SSR1-204ENST00000474597 ERICH3Q5RHP9 1530 aa31.56■■■□□ 2.64
SSR1-204ENST00000474597 WDR97A6NE52 1622 aa31.54■■■□□ 2.64
SSR1-204ENST00000474597 CEP162Q5TB80 1403 aa31.5■■■□□ 2.63
SSR1-204ENST00000474597 IGF1RP08069 1367 aa31.5■■■□□ 2.63
SSR1-204ENST00000474597 WDR62O43379 1518 aa31.49■■■□□ 2.63
SSR1-204ENST00000474597 TARBP1Q13395 1621 aaKnown RBP31.42■■■□□ 2.62
SSR1-204ENST00000474597 THOC2Q8NI27 1593 aaKnown RBP31.39■■■□□ 2.62
SSR1-204ENST00000474597 CARMIL1Q5VZK9 1371 aa31.39■■■□□ 2.62
SSR1-204ENST00000474597 ABCA5Q8WWZ7 1642 aa31.38■■■□□ 2.61
SSR1-204ENST00000474597 TDRD9Q8NDG6 1382 aaKnown RBP31.35■■■□□ 2.61
SSR1-204ENST00000474597 GAPVD1Q14C86 1478 aa31.34■■■□□ 2.61
SSR1-204ENST00000474597 CUL7Q14999 1698 aa31.33■■■□□ 2.61
SSR1-204ENST00000474597 IFT140Q96RY7 1462 aa31.3■■■□□ 2.6
SSR1-204ENST00000474597 CLIP1P30622 1438 aa31.27■■■□□ 2.6
SSR1-204ENST00000474597 PBRM1Q86U86 1689 aa31.2■■■□□ 2.58
SSR1-204ENST00000474597 RANGAP1P46060 587 aaPredicted RBP31.18■■■□□ 2.58
SSR1-204ENST00000474597 AQRO60306 1485 aaKnown RBP eCLIP31.14■■■□□ 2.587e-15■■■■□ 23.4
SSR1-204ENST00000474597 ZNF608Q9ULD9 1512 aaPredicted RBP31.1■■■□□ 2.57
SSR1-204ENST00000474597 GRIN2BQ13224 1484 aa31.08■■■□□ 2.57
SSR1-204ENST00000474597 EIF4G3O43432 1585 aaKnown RBP31.03■■■□□ 2.56
SSR1-204ENST00000474597 CTTNBP2Q8WZ74 1663 aa31.01■■■□□ 2.55
SSR1-204ENST00000474597 FHAD1B1AJZ9 1412 aa30.99■■■□□ 2.55
SSR1-204ENST00000474597 VPS8Q8N3P4 1428 aa30.99■■■□□ 2.55
SSR1-204ENST00000474597 ADAMTS12P58397 1594 aa30.98■■■□□ 2.55
SSR1-204ENST00000474597 PCGF6Q9BYE7 350 aa30.95■■■□□ 2.55
SSR1-204ENST00000474597 TRIM26Q12899 539 aaPredicted RBP30.94■■■□□ 2.54
SSR1-204ENST00000474597 ARAP1Q96P48 1450 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms