RNA–Protein interactions for RNA: ENST00000599589.5

ARHGEF1-218, Transcript of Rho guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best)

Gene ARHGEF1, Length 2,636 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF1-218ENST00000599589 NISCHQ9Y2I1 1504 aa39.39■■■■□ 3.9
ARHGEF1-218ENST00000599589 CCDC180Q9P1Z9 1646 aa33.89■■■■□ 3.02
ARHGEF1-218ENST00000599589 ZCCHC6Q5VYS8 1495 aaKnown RBP33.21■■■□□ 2.91
ARHGEF1-218ENST00000599589 SHROOM4Q9ULL8 1493 aa32.85■■■□□ 2.85
ARHGEF1-218ENST00000599589 SUPT5HO00267 1087 aaKnown RBP32.58■■■□□ 2.81
ARHGEF1-218ENST00000599589 DCAF8L2P0C7V8 631 aa32.55■■■□□ 2.8
ARHGEF1-218ENST00000599589 DCAF1Q9Y4B6 1507 aa32.5■■■□□ 2.79
ARHGEF1-218ENST00000599589 HRCP23327 699 aa32.48■■■□□ 2.79
ARHGEF1-218ENST00000599589 MYO15BQ96JP2 1530 aa32.17■■■□□ 2.74
ARHGEF1-218ENST00000599589 CHIC1Q5VXU3 224 aa31.99■■■□□ 2.71
ARHGEF1-218ENST00000599589 PCGF6Q9BYE7 350 aa31.97■■■□□ 2.71
ARHGEF1-218ENST00000599589 PPARGC1BQ86YN6 1023 aaKnown RBP31.82■■■□□ 2.69
ARHGEF1-218ENST00000599589 ABCC9O60706 1549 aa31.63■■■□□ 2.65
ARHGEF1-218ENST00000599589 NACADO15069 1562 aa31.47■■■□□ 2.63
ARHGEF1-218ENST00000599589 SCRIBQ14160 1630 aa31.41■■■□□ 2.62
ARHGEF1-218ENST00000599589 LOC105371045A0A1W2PR82 267 aa31.2■■■□□ 2.58
ARHGEF1-218ENST00000599589 TRIM26Q12899 539 aaPredicted RBP31.05■■■□□ 2.56
ARHGEF1-218ENST00000599589 RB1CC1Q8TDY2 1594 aa31.04■■■□□ 2.56
ARHGEF1-218ENST00000599589 RSF1Q96T23 1441 aaPredicted RBP30.89■■■□□ 2.54
ARHGEF1-218ENST00000599589 PELP1Q8IZL8 1130 aaKnown RBP30.81■■■□□ 2.52
ARHGEF1-218ENST00000599589 ZEB1P37275 1124 aaPredicted RBP30.68■■■□□ 2.5
ARHGEF1-218ENST00000599589 CECR2Q9BXF3 1484 aa30.62■■■□□ 2.49
ARHGEF1-218ENST00000599589 SCAF1Q9H7N4 1312 aaKnown RBP30.55■■■□□ 2.48
ARHGEF1-218ENST00000599589 MROH2BQ7Z745 1585 aa30.5■■■□□ 2.47
ARHGEF1-218ENST00000599589 UNC13AQ9UPW8 1703 aa30.41■■■□□ 2.46
ARHGEF1-218ENST00000599589 BAZ1AQ9NRL2 1556 aaPredicted RBP30.34■■■□□ 2.45
ARHGEF1-218ENST00000599589 WIZO95785 1651 aa30.27■■■□□ 2.44
ARHGEF1-218ENST00000599589 TRIM41Q8WV44 630 aa30.19■■■□□ 2.42
ARHGEF1-218ENST00000599589 FAM9AQ8IZU1 332 aaPredicted RBP30.12■■■□□ 2.41
ARHGEF1-218ENST00000599589 BICRAQ9NZM4 1560 aa30.12■■■□□ 2.41
ARHGEF1-218ENST00000599589 SMARCA4P51532 1647 aa30.1■■■□□ 2.41
ARHGEF1-218ENST00000599589 PABPN1Q86U42 306 aaKnown RBP eCLIP30.06■■■□□ 2.49e-7■■■□□ 16.6
ARHGEF1-218ENST00000599589 EHMT2Q96KQ7 1210 aa29.97■■■□□ 2.39
ARHGEF1-218ENST00000599589 TOP2AP11388 1531 aaKnown RBP29.93■■■□□ 2.38
ARHGEF1-218ENST00000599589 ACIN1Q9UKV3 1341 aaKnown RBP29.91■■■□□ 2.38
ARHGEF1-218ENST00000599589 NEUROD1Q13562 356 aa29.84■■■□□ 2.37
ARHGEF1-218ENST00000599589 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.75■■■□□ 2.35
ARHGEF1-218ENST00000599589 CCDC88BA6NC98 1476 aa29.72■■■□□ 2.35
ARHGEF1-218ENST00000599589 SMARCA2P51531 1590 aa29.69■■■□□ 2.34
ARHGEF1-218ENST00000599589 CCER1Q8TC90 406 aaPredicted RBP29.69■■■□□ 2.34
ARHGEF1-218ENST00000599589 EIF4G1Q04637 1599 aaKnown RBP29.68■■■□□ 2.34
ARHGEF1-218ENST00000599589 PEG3Q9GZU2 1588 aa29.67■■■□□ 2.34
ARHGEF1-218ENST00000599589 GTF3C3Q9Y5Q9 886 aa29.64■■■□□ 2.34
ARHGEF1-218ENST00000599589 DIEXFQ68CQ4 756 aaKnown RBP29.58■■■□□ 2.33
ARHGEF1-218ENST00000599589 CENPBP07199 599 aaPredicted RBP29.56■■■□□ 2.32
ARHGEF1-218ENST00000599589 MYT1Q01538 1121 aa29.5■■■□□ 2.31
ARHGEF1-218ENST00000599589 ATAD2BQ9ULI0 1458 aa29.49■■■□□ 2.31
ARHGEF1-218ENST00000599589 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
ARHGEF1-218ENST00000599589 ABCC8Q09428 1581 aa29.32■■■□□ 2.28
ARHGEF1-218ENST00000599589 TTBK1Q5TCY1 1321 aaPredicted RBP29.21■■■□□ 2.27
ARHGEF1-218ENST00000599589 WRNQ14191 1432 aaPredicted RBP eCLIP29.1■■■□□ 2.25
ARHGEF1-218ENST00000599589 NCAPD3P42695 1498 aa29.09■■■□□ 2.25
ARHGEF1-218ENST00000599589 ZNF316A6NFI3 1004 aaPredicted RBP29.09■■■□□ 2.25
ARHGEF1-218ENST00000599589 HMGXB3Q12766 1538 aa29.05■■■□□ 2.24
ARHGEF1-218ENST00000599589 YTHDC1Q96MU7 727 aaKnown RBP29.05■■■□□ 2.24
ARHGEF1-218ENST00000599589 CEP162Q5TB80 1403 aa28.99■■■□□ 2.23
ARHGEF1-218ENST00000599589 SOGA1O94964 1423 aa28.97■■■□□ 2.23
ARHGEF1-218ENST00000599589 EEA1Q15075 1411 aa28.97■■■□□ 2.23
ARHGEF1-218ENST00000599589 SYNJ1O43426 1573 aa28.86■■■□□ 2.21
ARHGEF1-218ENST00000599589 MIER1Q8N108 512 aa28.85■■■□□ 2.21
ARHGEF1-218ENST00000599589 CSRNP3Q8WYN3 585 aa28.85■■■□□ 2.21
ARHGEF1-218ENST00000599589 TNIKQ9UKE5 1360 aa28.82■■■□□ 2.2
ARHGEF1-218ENST00000599589 RUSC2Q8N2Y8 1516 aa28.81■■■□□ 2.2
ARHGEF1-218ENST00000599589 UBTFP17480 764 aaKnown RBP28.67■■■□□ 2.18
ARHGEF1-218ENST00000599589 TOP2BQ02880 1626 aa28.66■■■□□ 2.18
ARHGEF1-218ENST00000599589 CFTRP13569 1480 aa28.66■■■□□ 2.18
ARHGEF1-218ENST00000599589 GOLGA3Q08378 1498 aa28.63■■■□□ 2.17
ARHGEF1-218ENST00000599589 HNRNPUL2Q1KMD3 747 aaKnown RBP28.6■■■□□ 2.17
ARHGEF1-218ENST00000599589 BIVM-ERCC5R4GMW8 1640 aa28.58■■■□□ 2.17
ARHGEF1-218ENST00000599589 CC2D2AQ9P2K1 1620 aa28.56■■■□□ 2.16
ARHGEF1-218ENST00000599589 CEP164Q9UPV0 1460 aa28.55■■■□□ 2.16
ARHGEF1-218ENST00000599589 KIF21BO75037 1637 aa28.51■■■□□ 2.16
ARHGEF1-218ENST00000599589 CUX1P39880 1505 aa28.45■■■□□ 2.15
ARHGEF1-218ENST00000599589 CADPSQ9ULU8 1353 aa28.44■■■□□ 2.14
ARHGEF1-218ENST00000599589 PRDM2Q13029 1718 aa28.4■■■□□ 2.14
ARHGEF1-218ENST00000599589 RAPGEF2Q9Y4G8 1499 aa28.32■■■□□ 2.12
ARHGEF1-218ENST00000599589 SUPT16HQ9Y5B9 1047 aaKnown RBP28.3■■■□□ 2.12
ARHGEF1-218ENST00000599589 CLSPNQ9HAW4 1339 aa28.26■■■□□ 2.11
ARHGEF1-218ENST00000599589 CLIP1P30622 1438 aa28.26■■■□□ 2.11
ARHGEF1-218ENST00000599589 KIF27Q86VH2 1401 aa28.25■■■□□ 2.11
ARHGEF1-218ENST00000599589 PRXQ9BXM0 1461 aa28.22■■■□□ 2.11
ARHGEF1-218ENST00000599589 VPS8Q8N3P4 1428 aa28.21■■■□□ 2.11
ARHGEF1-218ENST00000599589 ERICH3Q5RHP9 1530 aa28.2■■■□□ 2.1
ARHGEF1-218ENST00000599589 APLP2Q06481 763 aa28.18■■■□□ 2.1
ARHGEF1-218ENST00000599589 FANCD2Q9BXW9 1451 aa28.12■■■□□ 2.09
ARHGEF1-218ENST00000599589 TSHZ2Q9NRE2 1034 aa28.09■■■□□ 2.09
ARHGEF1-218ENST00000599589 DHX57Q6P158 1386 aaKnown RBP28.06■■■□□ 2.08
ARHGEF1-218ENST00000599589 FGD5Q6ZNL6 1462 aa28.05■■■□□ 2.08
ARHGEF1-218ENST00000599589 CUX2O14529 1486 aa28.03■■■□□ 2.08
ARHGEF1-218ENST00000599589 RANGAP1P46060 587 aaPredicted RBP28.03■■■□□ 2.08
ARHGEF1-218ENST00000599589 ANP32EQ9BTT0 268 aa27.99■■■□□ 2.07
ARHGEF1-218ENST00000599589 NESP48681 1621 aa27.98■■■□□ 2.07
ARHGEF1-218ENST00000599589 IGF1RP08069 1367 aa27.96■■■□□ 2.07
ARHGEF1-218ENST00000599589 LAMC3Q9Y6N6 1575 aa27.94■■■□□ 2.06
ARHGEF1-218ENST00000599589 DNMBPQ6XZF7 1577 aa27.94■■■□□ 2.06
ARHGEF1-218ENST00000599589 TOPBP1Q92547 1522 aa27.88■■■□□ 2.05
ARHGEF1-218ENST00000599589 CARMIL1Q5VZK9 1371 aa27.83■■■□□ 2.05
ARHGEF1-218ENST00000599589 ARAP1Q96P48 1450 aa27.82■■■□□ 2.04
ARHGEF1-218ENST00000599589 POLA1P09884 1462 aaPredicted RBP27.81■■■□□ 2.04
ARHGEF1-218ENST00000599589 ABCA10Q8WWZ4 1543 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms