Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
LRRC40Q9H9A6 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
LRRC40Q9H9A6 AP002365.1-201ENST00000603448 772 ntBASIC28.24■■■□□ 2.11
LRRC40Q9H9A6 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
LRRC40Q9H9A6 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.22■■■□□ 2.11
LRRC40Q9H9A6 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
LRRC40Q9H9A6 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
LRRC40Q9H9A6 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.21■■■□□ 2.11
LRRC40Q9H9A6 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.2■■■□□ 2.1
LRRC40Q9H9A6 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC28.18■■■□□ 2.1
LRRC40Q9H9A6 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
LRRC40Q9H9A6 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.17■■■□□ 2.1
LRRC40Q9H9A6 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.17■■■□□ 2.1
LRRC40Q9H9A6 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.16■■■□□ 2.1
LRRC40Q9H9A6 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
LRRC40Q9H9A6 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.16■■■□□ 2.1
LRRC40Q9H9A6 AL031258.1-201ENST00000623562 325 ntBASIC28.16■■■□□ 2.1
LRRC40Q9H9A6 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
LRRC40Q9H9A6 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
LRRC40Q9H9A6 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
LRRC40Q9H9A6 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
LRRC40Q9H9A6 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
LRRC40Q9H9A6 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
LRRC40Q9H9A6 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.13■■■□□ 2.09
LRRC40Q9H9A6 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.13■■■□□ 2.09
LRRC40Q9H9A6 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.11■■■□□ 2.09
LRRC40Q9H9A6 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC28.11■■■□□ 2.09
LRRC40Q9H9A6 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
LRRC40Q9H9A6 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
LRRC40Q9H9A6 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
LRRC40Q9H9A6 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
LRRC40Q9H9A6 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.07■■■□□ 2.08
LRRC40Q9H9A6 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
LRRC40Q9H9A6 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.06■■■□□ 2.08
LRRC40Q9H9A6 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
LRRC40Q9H9A6 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
LRRC40Q9H9A6 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
LRRC40Q9H9A6 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.04■■■□□ 2.08
LRRC40Q9H9A6 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.03■■■□□ 2.08
LRRC40Q9H9A6 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.03■■■□□ 2.08
LRRC40Q9H9A6 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
LRRC40Q9H9A6 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
LRRC40Q9H9A6 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC28.01■■■□□ 2.07
LRRC40Q9H9A6 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
LRRC40Q9H9A6 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
LRRC40Q9H9A6 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC27.97■■■□□ 2.07
LRRC40Q9H9A6 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
LRRC40Q9H9A6 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
LRRC40Q9H9A6 AC120057.4-201ENST00000624722 1615 ntBASIC27.96■■■□□ 2.07
LRRC40Q9H9A6 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC27.96■■■□□ 2.07
LRRC40Q9H9A6 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
LRRC40Q9H9A6 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC27.95■■■□□ 2.06
LRRC40Q9H9A6 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.95■■■□□ 2.06
LRRC40Q9H9A6 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC27.94■■■□□ 2.06
LRRC40Q9H9A6 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC27.93■■■□□ 2.06
LRRC40Q9H9A6 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
LRRC40Q9H9A6 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
LRRC40Q9H9A6 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC27.92■■■□□ 2.06
LRRC40Q9H9A6 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC27.92■■■□□ 2.06
LRRC40Q9H9A6 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
LRRC40Q9H9A6 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
LRRC40Q9H9A6 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
LRRC40Q9H9A6 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
LRRC40Q9H9A6 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC27.91■■■□□ 2.06
LRRC40Q9H9A6 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC27.87■■■□□ 2.05
LRRC40Q9H9A6 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC27.87■■■□□ 2.05
LRRC40Q9H9A6 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
LRRC40Q9H9A6 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
LRRC40Q9H9A6 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
LRRC40Q9H9A6 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
LRRC40Q9H9A6 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC27.81■■■□□ 2.04
LRRC40Q9H9A6 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
LRRC40Q9H9A6 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
LRRC40Q9H9A6 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
LRRC40Q9H9A6 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC27.78■■■□□ 2.04
LRRC40Q9H9A6 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC27.78■■■□□ 2.04
LRRC40Q9H9A6 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
LRRC40Q9H9A6 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.76■■■□□ 2.03
LRRC40Q9H9A6 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
LRRC40Q9H9A6 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
LRRC40Q9H9A6 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.74■■■□□ 2.03
LRRC40Q9H9A6 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC27.73■■■□□ 2.03
LRRC40Q9H9A6 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
LRRC40Q9H9A6 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.73■■■□□ 2.03
LRRC40Q9H9A6 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
LRRC40Q9H9A6 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
LRRC40Q9H9A6 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
LRRC40Q9H9A6 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
LRRC40Q9H9A6 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
LRRC40Q9H9A6 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC27.7■■■□□ 2.02
LRRC40Q9H9A6 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
LRRC40Q9H9A6 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
LRRC40Q9H9A6 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC27.67■■■□□ 2.02
LRRC40Q9H9A6 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
LRRC40Q9H9A6 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.67■■■□□ 2.02
LRRC40Q9H9A6 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
LRRC40Q9H9A6 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC27.66■■■□□ 2.02
LRRC40Q9H9A6 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
LRRC40Q9H9A6 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC27.64■■■□□ 2.01
LRRC40Q9H9A6 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms