Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
LRRC40Q9H9A6 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
LRRC40Q9H9A6 AL356512.1-201ENST00000607453 1739 ntBASIC33.65■■■□□ 2.98
LRRC40Q9H9A6 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.52■■■□□ 2.96
LRRC40Q9H9A6 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.42■■■□□ 2.94
LRRC40Q9H9A6 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.26■■■□□ 2.91
LRRC40Q9H9A6 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.24■■■□□ 2.91
LRRC40Q9H9A6 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
LRRC40Q9H9A6 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.09■■■□□ 2.89
LRRC40Q9H9A6 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.78■■■□□ 2.84
LRRC40Q9H9A6 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.71■■■□□ 2.83
LRRC40Q9H9A6 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.54■■■□□ 2.8
LRRC40Q9H9A6 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC32.54■■■□□ 2.8
LRRC40Q9H9A6 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
LRRC40Q9H9A6 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.13■■■□□ 2.73
LRRC40Q9H9A6 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
LRRC40Q9H9A6 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.86■■■□□ 2.69
LRRC40Q9H9A6 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
LRRC40Q9H9A6 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.83■■■□□ 2.69
LRRC40Q9H9A6 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC31.8■■■□□ 2.68
LRRC40Q9H9A6 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
LRRC40Q9H9A6 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC31.62■■■□□ 2.65
LRRC40Q9H9A6 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
LRRC40Q9H9A6 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
LRRC40Q9H9A6 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
LRRC40Q9H9A6 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
LRRC40Q9H9A6 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
LRRC40Q9H9A6 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.36■■■□□ 2.61
LRRC40Q9H9A6 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
LRRC40Q9H9A6 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
LRRC40Q9H9A6 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.24■■■□□ 2.59
LRRC40Q9H9A6 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
LRRC40Q9H9A6 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
LRRC40Q9H9A6 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.17■■■□□ 2.58
LRRC40Q9H9A6 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
LRRC40Q9H9A6 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.06■■■□□ 2.56
LRRC40Q9H9A6 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC31.05■■■□□ 2.56
LRRC40Q9H9A6 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
LRRC40Q9H9A6 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.96■■■□□ 2.55
LRRC40Q9H9A6 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
LRRC40Q9H9A6 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
LRRC40Q9H9A6 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
LRRC40Q9H9A6 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.69■■■□□ 2.5
LRRC40Q9H9A6 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.68■■■□□ 2.5
LRRC40Q9H9A6 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
LRRC40Q9H9A6 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
LRRC40Q9H9A6 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.41■■■□□ 2.46
LRRC40Q9H9A6 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
LRRC40Q9H9A6 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.37■■■□□ 2.45
LRRC40Q9H9A6 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.35■■■□□ 2.45
LRRC40Q9H9A6 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
LRRC40Q9H9A6 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
LRRC40Q9H9A6 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
LRRC40Q9H9A6 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
LRRC40Q9H9A6 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
LRRC40Q9H9A6 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
LRRC40Q9H9A6 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
LRRC40Q9H9A6 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
LRRC40Q9H9A6 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC30.14■■■□□ 2.42
LRRC40Q9H9A6 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
LRRC40Q9H9A6 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
LRRC40Q9H9A6 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
LRRC40Q9H9A6 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC30.08■■■□□ 2.41
LRRC40Q9H9A6 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.07■■■□□ 2.4
LRRC40Q9H9A6 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.04■■■□□ 2.4
LRRC40Q9H9A6 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
LRRC40Q9H9A6 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
LRRC40Q9H9A6 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.91■■■□□ 2.38
LRRC40Q9H9A6 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
LRRC40Q9H9A6 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC29.9■■■□□ 2.38
LRRC40Q9H9A6 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
LRRC40Q9H9A6 AC015813.7-201ENST00000623294 581 ntBASIC29.82■■■□□ 2.36
LRRC40Q9H9A6 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
LRRC40Q9H9A6 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
LRRC40Q9H9A6 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
LRRC40Q9H9A6 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
LRRC40Q9H9A6 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.67■■■□□ 2.34
LRRC40Q9H9A6 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
LRRC40Q9H9A6 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.65■■■□□ 2.34
LRRC40Q9H9A6 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
LRRC40Q9H9A6 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
LRRC40Q9H9A6 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
LRRC40Q9H9A6 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
LRRC40Q9H9A6 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.55■■■□□ 2.32
LRRC40Q9H9A6 AC145285.7-201ENST00000614819 1539 ntBASIC29.53■■■□□ 2.32
LRRC40Q9H9A6 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
LRRC40Q9H9A6 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC29.47■■■□□ 2.31
LRRC40Q9H9A6 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
LRRC40Q9H9A6 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
LRRC40Q9H9A6 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
LRRC40Q9H9A6 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
LRRC40Q9H9A6 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
LRRC40Q9H9A6 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC29.34■■■□□ 2.29
LRRC40Q9H9A6 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
LRRC40Q9H9A6 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.31■■■□□ 2.28
LRRC40Q9H9A6 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
LRRC40Q9H9A6 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
LRRC40Q9H9A6 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
LRRC40Q9H9A6 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
LRRC40Q9H9A6 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.18■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms