Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SOX2P48431 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.26□□□□□ -0.29
SOX2P48431 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.26□□□□□ -0.29
SOX2P48431 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.25□□□□□ -0.29
SOX2P48431 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX2P48431 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX2P48431 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX2P48431 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC13.25□□□□□ -0.29
SOX2P48431 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.25□□□□□ -0.29
SOX2P48431 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX2P48431 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 AP001059.3-201ENST00000619053 235 ntBASIC13.25□□□□□ -0.29
SOX2P48431 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC13.25□□□□□ -0.29
SOX2P48431 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 MST1P2-201ENST00000457982 2291 ntBASIC13.25□□□□□ -0.29
SOX2P48431 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 AL354702.1-201ENST00000442006 1960 ntBASIC13.25□□□□□ -0.29
SOX2P48431 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC13.25□□□□□ -0.29
SOX2P48431 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.25□□□□□ -0.29
SOX2P48431 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.25□□□□□ -0.29
SOX2P48431 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
SOX2P48431 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 GOLGA6L17P-202ENST00000614358 1398 ntBASIC13.24□□□□□ -0.29
SOX2P48431 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX2P48431 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 AC004066.1-201ENST00000502488 802 ntBASIC13.24□□□□□ -0.29
SOX2P48431 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX2P48431 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.24□□□□□ -0.29
SOX2P48431 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.24□□□□□ -0.29
SOX2P48431 AC051619.7-201ENST00000568314 623 ntBASIC13.24□□□□□ -0.29
SOX2P48431 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
SOX2P48431 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.24□□□□□ -0.29
SOX2P48431 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms