RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 NISCHQ9Y2I1 1504 aa32.04■■■□□ 2.72
CDH1-213ENST00000612417 CCDC180Q9P1Z9 1646 aa27.85■■■□□ 2.05
CDH1-213ENST00000612417 ZCCHC6Q5VYS8 1495 aaKnown RBP26.9■■□□□ 1.9
CDH1-213ENST00000612417 DCAF8L2P0C7V8 631 aa26.69■■□□□ 1.86
CDH1-213ENST00000612417 ABCC9O60706 1549 aa26.41■■□□□ 1.82
CDH1-213ENST00000612417 DCAF1Q9Y4B6 1507 aa26.41■■□□□ 1.82
CDH1-213ENST00000612417 SHROOM4Q9ULL8 1493 aa26.39■■□□□ 1.81
CDH1-213ENST00000612417 MYO15BQ96JP2 1530 aa26.04■■□□□ 1.76
CDH1-213ENST00000612417 NACADO15069 1562 aa25.95■■□□□ 1.74
CDH1-213ENST00000612417 SCRIBQ14160 1630 aa25.74■■□□□ 1.71
CDH1-213ENST00000612417 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
CDH1-213ENST00000612417 SUPT5HO00267 1087 aaKnown RBP25.45■■□□□ 1.66
CDH1-213ENST00000612417 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
CDH1-213ENST00000612417 PABPN1Q86U42 306 aaKnown RBP eCLIP24.98■■□□□ 1.59
CDH1-213ENST00000612417 BICRAQ9NZM4 1560 aa24.94■■□□□ 1.58
CDH1-213ENST00000612417 CECR2Q9BXF3 1484 aa24.93■■□□□ 1.58
CDH1-213ENST00000612417 RSF1Q96T23 1441 aaPredicted RBP24.91■■□□□ 1.58
CDH1-213ENST00000612417 MROH2BQ7Z745 1585 aa24.79■■□□□ 1.56
CDH1-213ENST00000612417 CHIC1Q5VXU3 224 aa24.74■■□□□ 1.55
CDH1-213ENST00000612417 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
CDH1-213ENST00000612417 SMARCA4P51532 1647 aa24.62■■□□□ 1.53
CDH1-213ENST00000612417 WIZO95785 1651 aa24.62■■□□□ 1.53
CDH1-213ENST00000612417 TOP2AP11388 1531 aaKnown RBP24.3■■□□□ 1.48
CDH1-213ENST00000612417 PEG3Q9GZU2 1588 aa24.24■■□□□ 1.47
CDH1-213ENST00000612417 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.46
CDH1-213ENST00000612417 ATAD2BQ9ULI0 1458 aa24.19■■□□□ 1.46
CDH1-213ENST00000612417 SMARCA2P51531 1590 aa24.18■■□□□ 1.46
CDH1-213ENST00000612417 CCDC88BA6NC98 1476 aa24.1■■□□□ 1.45
CDH1-213ENST00000612417 BAZ1BQ9UIG0 1483 aaKnown RBP24.1■■□□□ 1.45
CDH1-213ENST00000612417 NCAPD3P42695 1498 aa23.94■■□□□ 1.42
CDH1-213ENST00000612417 HMGXB3Q12766 1538 aa23.9■■□□□ 1.42
CDH1-213ENST00000612417 TRIM41Q8WV44 630 aa23.88■■□□□ 1.41
CDH1-213ENST00000612417 HRCP23327 699 aa23.87■■□□□ 1.41
CDH1-213ENST00000612417 LOC105371045A0A1W2PR82 267 aa23.85■■□□□ 1.41
CDH1-213ENST00000612417 CC2D2AQ9P2K1 1620 aa23.85■■□□□ 1.41
CDH1-213ENST00000612417 PCGF6Q9BYE7 350 aa23.77■■□□□ 1.4
CDH1-213ENST00000612417 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
CDH1-213ENST00000612417 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.35
CDH1-213ENST00000612417 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
CDH1-213ENST00000612417 WRNQ14191 1432 aaPredicted RBP eCLIP23.46■■□□□ 1.35
CDH1-213ENST00000612417 CFTRP13569 1480 aa23.45■■□□□ 1.34
CDH1-213ENST00000612417 CADPSQ9ULU8 1353 aa23.39■■□□□ 1.33
CDH1-213ENST00000612417 SYNJ1O43426 1573 aa23.35■■□□□ 1.33
CDH1-213ENST00000612417 PRDM2Q13029 1718 aa23.35■■□□□ 1.33
CDH1-213ENST00000612417 DNAJC5BQ9UF47 199 aa23.29■■□□□ 1.32
CDH1-213ENST00000612417 EHMT2Q96KQ7 1210 aa23.26■■□□□ 1.31
CDH1-213ENST00000612417 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
CDH1-213ENST00000612417 SOGA1O94964 1423 aa23.23■■□□□ 1.31
CDH1-213ENST00000612417 NESP48681 1621 aa23.19■■□□□ 1.3
CDH1-213ENST00000612417 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
CDH1-213ENST00000612417 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
CDH1-213ENST00000612417 CUX1P39880 1505 aa23.17■■□□□ 1.3
CDH1-213ENST00000612417 FANCD2Q9BXW9 1451 aa23.14■■□□□ 1.3
CDH1-213ENST00000612417 RUSC2Q8N2Y8 1516 aa23.14■■□□□ 1.29
CDH1-213ENST00000612417 LAMC3Q9Y6N6 1575 aa23.13■■□□□ 1.29
CDH1-213ENST00000612417 EEA1Q15075 1411 aa23.13■■□□□ 1.29
CDH1-213ENST00000612417 CSRNP3Q8WYN3 585 aa23.09■■□□□ 1.29
CDH1-213ENST00000612417 ZEB1P37275 1124 aaPredicted RBP23.02■■□□□ 1.28
CDH1-213ENST00000612417 PDS5BQ9NTI5 1447 aa22.99■■□□□ 1.27
CDH1-213ENST00000612417 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
CDH1-213ENST00000612417 DNMBPQ6XZF7 1577 aa22.92■■□□□ 1.26
CDH1-213ENST00000612417 FGD5Q6ZNL6 1462 aa22.91■■□□□ 1.26
CDH1-213ENST00000612417 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
CDH1-213ENST00000612417 UBTFP17480 764 aaKnown RBP22.89■■□□□ 1.25
CDH1-213ENST00000612417 TOPBP1Q92547 1522 aa22.89■■□□□ 1.25
CDH1-213ENST00000612417 KIF27Q86VH2 1401 aa22.87■■□□□ 1.25
CDH1-213ENST00000612417 GOLGA3Q08378 1498 aa22.86■■□□□ 1.25
CDH1-213ENST00000612417 URB2Q14146 1524 aaKnown RBP22.83■■□□□ 1.25
CDH1-213ENST00000612417 KIF21BO75037 1637 aa22.83■■□□□ 1.24
CDH1-213ENST00000612417 TNIKQ9UKE5 1360 aa22.83■■□□□ 1.24
CDH1-213ENST00000612417 CUX2O14529 1486 aa22.81■■□□□ 1.24
CDH1-213ENST00000612417 CEP162Q5TB80 1403 aa22.8■■□□□ 1.24
CDH1-213ENST00000612417 POLA1P09884 1462 aaPredicted RBP22.78■■□□□ 1.24
CDH1-213ENST00000612417 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
CDH1-213ENST00000612417 RAPGEF2Q9Y4G8 1499 aa22.74■■□□□ 1.23
CDH1-213ENST00000612417 PRXQ9BXM0 1461 aa22.69■■□□□ 1.22
CDH1-213ENST00000612417 MRC2Q9UBG0 1479 aa22.67■■□□□ 1.22
CDH1-213ENST00000612417 ABCA10Q8WWZ4 1543 aa22.67■■□□□ 1.22
CDH1-213ENST00000612417 IGF1RP08069 1367 aa22.65■■□□□ 1.22
CDH1-213ENST00000612417 ERICH3Q5RHP9 1530 aa22.65■■□□□ 1.22
CDH1-213ENST00000612417 ERCC6Q03468 1493 aa22.65■■□□□ 1.22
CDH1-213ENST00000612417 PELP1Q8IZL8 1130 aaKnown RBP22.58■■□□□ 1.21
CDH1-213ENST00000612417 WDR97A6NE52 1622 aa22.57■■□□□ 1.2
CDH1-213ENST00000612417 RANGAP1P46060 587 aaPredicted RBP22.57■■□□□ 1.2
CDH1-213ENST00000612417 CARMIL1Q5VZK9 1371 aa22.56■■□□□ 1.2
CDH1-213ENST00000612417 TDRD9Q8NDG6 1382 aaKnown RBP22.55■■□□□ 1.2
CDH1-213ENST00000612417 CLIP1P30622 1438 aa22.52■■□□□ 1.2
CDH1-213ENST00000612417 WDR62O43379 1518 aa22.52■■□□□ 1.2
CDH1-213ENST00000612417 TARBP1Q13395 1621 aaKnown RBP22.51■■□□□ 1.19
CDH1-213ENST00000612417 GAPVD1Q14C86 1478 aa22.48■■□□□ 1.19
CDH1-213ENST00000612417 ABCA5Q8WWZ7 1642 aa22.48■■□□□ 1.19
CDH1-213ENST00000612417 CUL7Q14999 1698 aa22.44■■□□□ 1.18
CDH1-213ENST00000612417 THOC2Q8NI27 1593 aaKnown RBP22.43■■□□□ 1.18
CDH1-213ENST00000612417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.42■■□□□ 1.18
CDH1-213ENST00000612417 IFT140Q96RY7 1462 aa22.4■■□□□ 1.18
CDH1-213ENST00000612417 CCER1Q8TC90 406 aaPredicted RBP22.4■■□□□ 1.18
CDH1-213ENST00000612417 AQRO60306 1485 aaKnown RBP eCLIP22.38■■□□□ 1.17
CDH1-213ENST00000612417 PBRM1Q86U86 1689 aa22.34■■□□□ 1.17
CDH1-213ENST00000612417 VPS8Q8N3P4 1428 aa22.34■■□□□ 1.17
CDH1-213ENST00000612417 ZNF608Q9ULD9 1512 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms