RNA–Protein interactions for RNA: ENST00000326828.5

CHRNA3-201, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRNA3, Length 3,202 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-201ENST00000326828 NISCHQ9Y2I1 1504 aa27.27■■□□□ 1.96
CHRNA3-201ENST00000326828 SHROOM4Q9ULL8 1493 aa24.68■■□□□ 1.54
CHRNA3-201ENST00000326828 SUPT5HO00267 1087 aaKnown RBP24.51■■□□□ 1.51
CHRNA3-201ENST00000326828 HRCP23327 699 aa23.94■■□□□ 1.42
CHRNA3-201ENST00000326828 PCGF6Q9BYE7 350 aa23.92■■□□□ 1.42
CHRNA3-201ENST00000326828 PPARGC1BQ86YN6 1023 aaKnown RBP23.83■■□□□ 1.4
CHRNA3-201ENST00000326828 MYO15BQ96JP2 1530 aa23.68■■□□□ 1.38
CHRNA3-201ENST00000326828 DCAF8L2P0C7V8 631 aa23.68■■□□□ 1.38
CHRNA3-201ENST00000326828 CHIC1Q5VXU3 224 aa23.65■■□□□ 1.38
CHRNA3-201ENST00000326828 LOC105371045A0A1W2PR82 267 aa23.37■■□□□ 1.33
CHRNA3-201ENST00000326828 ZCCHC6Q5VYS8 1495 aaKnown RBP23.08■■□□□ 1.29
CHRNA3-201ENST00000326828 EHMT2Q96KQ7 1210 aa22.95■■□□□ 1.27
CHRNA3-201ENST00000326828 TRIM26Q12899 539 aaPredicted RBP22.91■■□□□ 1.26
CHRNA3-201ENST00000326828 DCAF1Q9Y4B6 1507 aa22.81■■□□□ 1.24
CHRNA3-201ENST00000326828 FAM9AQ8IZU1 332 aaPredicted RBP22.79■■□□□ 1.24
CHRNA3-201ENST00000326828 SCAF1Q9H7N4 1312 aaKnown RBP22.61■■□□□ 1.21
CHRNA3-201ENST00000326828 ZEB1P37275 1124 aaPredicted RBP22.5■■□□□ 1.19
CHRNA3-201ENST00000326828 TRIM41Q8WV44 630 aa22.5■■□□□ 1.19
CHRNA3-201ENST00000326828 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
CHRNA3-201ENST00000326828 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
CHRNA3-201ENST00000326828 TTBK1Q5TCY1 1321 aaPredicted RBP22.29■■□□□ 1.16
CHRNA3-201ENST00000326828 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.28■■□□□ 1.16
CHRNA3-201ENST00000326828 CCER1Q8TC90 406 aaPredicted RBP22.18■■□□□ 1.14
CHRNA3-201ENST00000326828 NEUROD1Q13562 356 aa22.15■■□□□ 1.14
CHRNA3-201ENST00000326828 ACIN1Q9UKV3 1341 aaKnown RBP22.07■■□□□ 1.12
CHRNA3-201ENST00000326828 GTF3C3Q9Y5Q9 886 aa22.05■■□□□ 1.12
CHRNA3-201ENST00000326828 RSF1Q96T23 1441 aaPredicted RBP22■■□□□ 1.11
CHRNA3-201ENST00000326828 DIEXFQ68CQ4 756 aaKnown RBP21.96■■□□□ 1.11
CHRNA3-201ENST00000326828 YTHDC1Q96MU7 727 aaKnown RBP21.91■■□□□ 1.1
CHRNA3-201ENST00000326828 RB1CC1Q8TDY2 1594 aa21.89■■□□□ 1.1
CHRNA3-201ENST00000326828 SCRIBQ14160 1630 aa21.88■■□□□ 1.09
CHRNA3-201ENST00000326828 CENPBP07199 599 aaPredicted RBP21.87■■□□□ 1.09
CHRNA3-201ENST00000326828 ABCC9O60706 1549 aa21.87■■□□□ 1.09
CHRNA3-201ENST00000326828 CECR2Q9BXF3 1484 aa21.58■■□□□ 1.05
CHRNA3-201ENST00000326828 ZNF316A6NFI3 1004 aaPredicted RBP21.5■■□□□ 1.03
CHRNA3-201ENST00000326828 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
CHRNA3-201ENST00000326828 HNRNPUL2Q1KMD3 747 aaKnown RBP21.49■■□□□ 1.03
CHRNA3-201ENST00000326828 MIER1Q8N108 512 aa21.46■■□□□ 1.03
CHRNA3-201ENST00000326828 MROH2BQ7Z745 1585 aa21.43■■□□□ 1.02
CHRNA3-201ENST00000326828 RANGAP1P46060 587 aaPredicted RBP21.4■■□□□ 1.02
CHRNA3-201ENST00000326828 MYT1Q01538 1121 aa21.38■■□□□ 1.01
CHRNA3-201ENST00000326828 WIZO95785 1651 aa21.34■■□□□ 1.01
CHRNA3-201ENST00000326828 CEP162Q5TB80 1403 aa21.32■■□□□ 1
CHRNA3-201ENST00000326828 ABCC8Q09428 1581 aa21.28■■□□□ 1
CHRNA3-201ENST00000326828 CCDC88BA6NC98 1476 aa21.26■□□□□ 0.99
CHRNA3-201ENST00000326828 SOGA1O94964 1423 aa21.25■□□□□ 0.99
CHRNA3-201ENST00000326828 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
CHRNA3-201ENST00000326828 RUSC2Q8N2Y8 1516 aa21.12■□□□□ 0.97
CHRNA3-201ENST00000326828 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
CHRNA3-201ENST00000326828 APLP2Q06481 763 aa21.07■□□□□ 0.96
CHRNA3-201ENST00000326828 TNIKQ9UKE5 1360 aa21.06■□□□□ 0.96
CHRNA3-201ENST00000326828 BAZ1AQ9NRL2 1556 aaPredicted RBP20.95■□□□□ 0.94
CHRNA3-201ENST00000326828 SUPT16HQ9Y5B9 1047 aaKnown RBP20.93■□□□□ 0.94
CHRNA3-201ENST00000326828 BCANQ96GW7 911 aa20.91■□□□□ 0.94
CHRNA3-201ENST00000326828 PABPN1Q86U42 306 aaKnown RBP eCLIP20.89■□□□□ 0.93
CHRNA3-201ENST00000326828 EIF4G1Q04637 1599 aaKnown RBP20.88■□□□□ 0.93
CHRNA3-201ENST00000326828 ITGAEP38570 1179 aa20.86■□□□□ 0.93
CHRNA3-201ENST00000326828 GOLGA3Q08378 1498 aa20.85■□□□□ 0.93
CHRNA3-201ENST00000326828 NACADO15069 1562 aa20.83■□□□□ 0.93
CHRNA3-201ENST00000326828 CLIP1P30622 1438 aa20.82■□□□□ 0.92
CHRNA3-201ENST00000326828 KCNH8Q96L42 1107 aa20.78■□□□□ 0.92
CHRNA3-201ENST00000326828 TOP2AP11388 1531 aaKnown RBP20.75■□□□□ 0.91
CHRNA3-201ENST00000326828 TSHZ2Q9NRE2 1034 aa20.75■□□□□ 0.91
CHRNA3-201ENST00000326828 SMARCA2P51531 1590 aa20.74■□□□□ 0.91
CHRNA3-201ENST00000326828 EEA1Q15075 1411 aa20.73■□□□□ 0.91
CHRNA3-201ENST00000326828 VPS8Q8N3P4 1428 aa20.65■□□□□ 0.9
CHRNA3-201ENST00000326828 KANK4Q5T7N3 995 aaPredicted RBP20.63■□□□□ 0.89
CHRNA3-201ENST00000326828 CEP164Q9UPV0 1460 aa20.63■□□□□ 0.89
CHRNA3-201ENST00000326828 DHX57Q6P158 1386 aaKnown RBP20.61■□□□□ 0.89
CHRNA3-201ENST00000326828 SMARCA4P51532 1647 aa20.61■□□□□ 0.89
CHRNA3-201ENST00000326828 ANP32EQ9BTT0 268 aa20.61■□□□□ 0.89
CHRNA3-201ENST00000326828 RAPGEF2Q9Y4G8 1499 aa20.6■□□□□ 0.89
CHRNA3-201ENST00000326828 FKBP8Q14318 412 aa20.6■□□□□ 0.89
CHRNA3-201ENST00000326828 HIRIP3Q9BW71 556 aaPredicted RBP20.56■□□□□ 0.88
CHRNA3-201ENST00000326828 DDX10Q13206 875 aaKnown RBP20.54■□□□□ 0.88
CHRNA3-201ENST00000326828 CLSPNQ9HAW4 1339 aa20.49■□□□□ 0.87
CHRNA3-201ENST00000326828 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
CHRNA3-201ENST00000326828 TRIM52Q96A61 297 aa20.48■□□□□ 0.87
CHRNA3-201ENST00000326828 BCL11AQ9H165 835 aa20.46■□□□□ 0.87
CHRNA3-201ENST00000326828 KIF21BO75037 1637 aa20.45■□□□□ 0.86
CHRNA3-201ENST00000326828 NEFLP07196 543 aa20.4■□□□□ 0.86
CHRNA3-201ENST00000326828 SIN3AQ96ST3 1273 aa20.4■□□□□ 0.86
CHRNA3-201ENST00000326828 ATP1B4Q9UN42 357 aaPredicted RBP20.38■□□□□ 0.85
CHRNA3-201ENST00000326828 RBM19Q9Y4C8 960 aaKnown RBP20.33■□□□□ 0.84
CHRNA3-201ENST00000326828 FAM50AQ14320 339 aaKnown RBP20.32■□□□□ 0.84
CHRNA3-201ENST00000326828 IRX6P78412 446 aaPredicted RBP20.3■□□□□ 0.84
CHRNA3-201ENST00000326828 BAZ1BQ9UIG0 1483 aaKnown RBP20.28■□□□□ 0.84
CHRNA3-201ENST00000326828 CCNB3Q8WWL7 1395 aa20.28■□□□□ 0.84
CHRNA3-201ENST00000326828 RAB3GAP2Q9H2M9 1393 aa20.26■□□□□ 0.83
CHRNA3-201ENST00000326828 ARAP1Q96P48 1450 aa20.24■□□□□ 0.83
CHRNA3-201ENST00000326828 P3H3Q8IVL6 736 aa20.22■□□□□ 0.83
CHRNA3-201ENST00000326828 ANP32CO43423 234 aa20.19■□□□□ 0.82
CHRNA3-201ENST00000326828 UNC13AQ9UPW8 1703 aa20.15■□□□□ 0.82
CHRNA3-201ENST00000326828 RRBP1Q9P2E9 1410 aaKnown RBP20.13■□□□□ 0.81
CHRNA3-201ENST00000326828 ERICH6Q7L0X2 663 aa20.13■□□□□ 0.81
CHRNA3-201ENST00000326828 WDR97A6NE52 1622 aa20.1■□□□□ 0.81
CHRNA3-201ENST00000326828 MSH5O43196 834 aa20.1■□□□□ 0.81
CHRNA3-201ENST00000326828 PPP1R15AO75807 674 aaPredicted RBP20.09■□□□□ 0.81
CHRNA3-201ENST00000326828 HNRNPUQ00839 825 aaKnown RBP eCLIP20.08■□□□□ 0.81
CHRNA3-201ENST00000326828 ATAD2BQ9ULI0 1458 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms