RNA–Protein interactions for RNA: ENST00000588275.2

LINC01842-201, Transcript of long intergenic non-protein coding RNA 1842, humanhuman

TSL 1 (best) BASIC

Gene LINC01842, Length 768 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01842-201ENST00000588275 NISCHQ9Y2I1 1504 aa42.12■■■■■ 4.33
LINC01842-201ENST00000588275 ABCC9O60706 1549 aa37.93■■■■□ 3.66
LINC01842-201ENST00000588275 CCDC180Q9P1Z9 1646 aa37.83■■■■□ 3.65
LINC01842-201ENST00000588275 RB1CC1Q8TDY2 1594 aa36.05■■■■□ 3.36
LINC01842-201ENST00000588275 NACADO15069 1562 aa35.76■■■■□ 3.31
LINC01842-201ENST00000588275 DCAF8L2P0C7V8 631 aa35.69■■■■□ 3.3
LINC01842-201ENST00000588275 DNAJC5BQ9UF47 199 aa35.53■■■■□ 3.28
LINC01842-201ENST00000588275 PABPN1Q86U42 306 aaKnown RBP eCLIP35.31■■■■□ 3.24
LINC01842-201ENST00000588275 UNC13AQ9UPW8 1703 aa35.26■■■■□ 3.24
LINC01842-201ENST00000588275 MYO15BQ96JP2 1530 aa35.17■■■■□ 3.22
LINC01842-201ENST00000588275 BICRAQ9NZM4 1560 aa34.97■■■■□ 3.19
LINC01842-201ENST00000588275 ZCCHC6Q5VYS8 1495 aaKnown RBP34.9■■■■□ 3.18
LINC01842-201ENST00000588275 DCAF1Q9Y4B6 1507 aa34.73■■■■□ 3.15
LINC01842-201ENST00000588275 SCRIBQ14160 1630 aa34.55■■■■□ 3.12
LINC01842-201ENST00000588275 SHROOM4Q9ULL8 1493 aa34.45■■■■□ 3.1
LINC01842-201ENST00000588275 CC2D2AQ9P2K1 1620 aa34.24■■■■□ 3.07
LINC01842-201ENST00000588275 EIF4G1Q04637 1599 aaKnown RBP34.15■■■■□ 3.06
LINC01842-201ENST00000588275 CECR2Q9BXF3 1484 aa34.14■■■■□ 3.06
LINC01842-201ENST00000588275 NCAPD3P42695 1498 aa32.98■■■□□ 2.87
LINC01842-201ENST00000588275 ATAD2BQ9ULI0 1458 aa32.91■■■□□ 2.86
LINC01842-201ENST00000588275 SMARCA4P51532 1647 aa32.91■■■□□ 2.86
LINC01842-201ENST00000588275 SMARCA2P51531 1590 aa32.83■■■□□ 2.85
LINC01842-201ENST00000588275 ERCC6Q03468 1493 aa32.78■■■□□ 2.84
LINC01842-201ENST00000588275 HMGXB3Q12766 1538 aa32.77■■■□□ 2.84
LINC01842-201ENST00000588275 BAZ1AQ9NRL2 1556 aaPredicted RBP32.72■■■□□ 2.83
LINC01842-201ENST00000588275 CUX2O14529 1486 aa32.65■■■□□ 2.82
LINC01842-201ENST00000588275 DNAJC5Q9H3Z4 198 aa32.64■■■□□ 2.82
LINC01842-201ENST00000588275 BAZ1BQ9UIG0 1483 aaKnown RBP32.64■■■□□ 2.82
LINC01842-201ENST00000588275 NESP48681 1621 aa32.56■■■□□ 2.8
LINC01842-201ENST00000588275 PEG3Q9GZU2 1588 aa32.51■■■□□ 2.79
LINC01842-201ENST00000588275 MROH2BQ7Z745 1585 aa32.48■■■□□ 2.79
LINC01842-201ENST00000588275 LAMC3Q9Y6N6 1575 aa32.29■■■□□ 2.76
LINC01842-201ENST00000588275 THOC2Q8NI27 1593 aaKnown RBP32.23■■■□□ 2.75
LINC01842-201ENST00000588275 KIF21AQ7Z4S6 1674 aa32.17■■■□□ 2.74
LINC01842-201ENST00000588275 WIZO95785 1651 aa32.12■■■□□ 2.73
LINC01842-201ENST00000588275 PDS5BQ9NTI5 1447 aa32.1■■■□□ 2.73
LINC01842-201ENST00000588275 CADPSQ9ULU8 1353 aa32■■■□□ 2.71
LINC01842-201ENST00000588275 MRC2Q9UBG0 1479 aa31.85■■■□□ 2.69
LINC01842-201ENST00000588275 RSF1Q96T23 1441 aaPredicted RBP31.76■■■□□ 2.68
LINC01842-201ENST00000588275 WDR62O43379 1518 aa31.76■■■□□ 2.68
LINC01842-201ENST00000588275 CEP164Q9UPV0 1460 aa31.73■■■□□ 2.67
LINC01842-201ENST00000588275 TOP2AP11388 1531 aaKnown RBP31.69■■■□□ 2.66
LINC01842-201ENST00000588275 FANCD2Q9BXW9 1451 aa31.68■■■□□ 2.66
LINC01842-201ENST00000588275 CFTRP13569 1480 aa31.62■■■□□ 2.65
LINC01842-201ENST00000588275 URB2Q14146 1524 aaKnown RBP31.41■■■□□ 2.62
LINC01842-201ENST00000588275 PRDM2Q13029 1718 aa31.38■■■□□ 2.61
LINC01842-201ENST00000588275 TRIM41Q8WV44 630 aa31.34■■■□□ 2.61
LINC01842-201ENST00000588275 CCDC88BA6NC98 1476 aa31.32■■■□□ 2.6
LINC01842-201ENST00000588275 OSCARQ8IYS5 282 aa31.15■■■□□ 2.58
LINC01842-201ENST00000588275 IFT140Q96RY7 1462 aa31.08■■■□□ 2.57
LINC01842-201ENST00000588275 TOPBP1Q92547 1522 aa31.07■■■□□ 2.56
LINC01842-201ENST00000588275 ZNF608Q9ULD9 1512 aaPredicted RBP31.04■■■□□ 2.56
LINC01842-201ENST00000588275 ABCC8Q09428 1581 aa30.96■■■□□ 2.55
LINC01842-201ENST00000588275 DNMBPQ6XZF7 1577 aa30.96■■■□□ 2.55
LINC01842-201ENST00000588275 EIF4G3O43432 1585 aaKnown RBP30.9■■■□□ 2.54
LINC01842-201ENST00000588275 RIMBP3CA6NJZ7 1639 aa30.8■■■□□ 2.52
LINC01842-201ENST00000588275 RIMBP3BA6NNM3 1639 aa30.8■■■□□ 2.52
LINC01842-201ENST00000588275 RIMBP3Q9UFD9 1639 aa30.8■■■□□ 2.52
LINC01842-201ENST00000588275 TARBP1Q13395 1621 aaKnown RBP30.79■■■□□ 2.52
LINC01842-201ENST00000588275 AQRO60306 1485 aaKnown RBP eCLIP30.76■■■□□ 2.52
LINC01842-201ENST00000588275 POLA1P09884 1462 aaPredicted RBP30.76■■■□□ 2.51
LINC01842-201ENST00000588275 CHD1O14646 1710 aa30.7■■■□□ 2.5
LINC01842-201ENST00000588275 ARHGEF11O15085 1522 aa30.68■■■□□ 2.5
LINC01842-201ENST00000588275 RAD54L2Q9Y4B4 1467 aa30.66■■■□□ 2.5
LINC01842-201ENST00000588275 FBLN2P98095 1184 aa30.63■■■□□ 2.49
LINC01842-201ENST00000588275 SOGA1O94964 1423 aa30.6■■■□□ 2.49
LINC01842-201ENST00000588275 FGD5Q6ZNL6 1462 aa30.57■■■□□ 2.48
LINC01842-201ENST00000588275 TDRD9Q8NDG6 1382 aaKnown RBP30.57■■■□□ 2.48
LINC01842-201ENST00000588275 CUX1P39880 1505 aa30.52■■■□□ 2.48
LINC01842-201ENST00000588275 SNAPC4Q5SXM2 1469 aa30.47■■■□□ 2.47
LINC01842-201ENST00000588275 CYB5RLQ6IPT4 315 aa30.47■■■□□ 2.47
LINC01842-201ENST00000588275 WDR97A6NE52 1622 aa30.44■■■□□ 2.46
LINC01842-201ENST00000588275 SUPT5HO00267 1087 aaKnown RBP30.44■■■□□ 2.46
LINC01842-201ENST00000588275 ARAP1Q96P48 1450 aa30.38■■■□□ 2.45
LINC01842-201ENST00000588275 CHMP7Q8WUX9 453 aaPredicted RBP30.35■■■□□ 2.45
LINC01842-201ENST00000588275 GRIN2BQ13224 1484 aa30.35■■■□□ 2.45
LINC01842-201ENST00000588275 MAGI1Q96QZ7 1491 aaPredicted RBP30.34■■■□□ 2.45
LINC01842-201ENST00000588275 SYNJ1O43426 1573 aa30.29■■■□□ 2.44
LINC01842-201ENST00000588275 PBRM1Q86U86 1689 aa30.29■■■□□ 2.44
LINC01842-201ENST00000588275 CLASP1Q7Z460 1538 aa30.28■■■□□ 2.44
LINC01842-201ENST00000588275 SYNJ2O15056 1496 aa30.25■■■□□ 2.43
LINC01842-201ENST00000588275 GAPVD1Q14C86 1478 aa30.25■■■□□ 2.43
LINC01842-201ENST00000588275 TRHP20396 242 aaPredicted RBP30.2■■■□□ 2.43
LINC01842-201ENST00000588275 ABCA10Q8WWZ4 1543 aa30.18■■■□□ 2.42
LINC01842-201ENST00000588275 ABCA5Q8WWZ7 1642 aa30.17■■■□□ 2.42
LINC01842-201ENST00000588275 WRNQ14191 1432 aaPredicted RBP eCLIP30.06■■■□□ 2.4
LINC01842-201ENST00000588275 BIVM-ERCC5R4GMW8 1640 aa30.03■■■□□ 2.4
LINC01842-201ENST00000588275 TOP2BQ02880 1626 aa30.02■■■□□ 2.4
LINC01842-201ENST00000588275 GRIN2AQ12879 1464 aa29.97■■■□□ 2.39
LINC01842-201ENST00000588275 ADAMTS12P58397 1594 aa29.97■■■□□ 2.39
LINC01842-201ENST00000588275 CEP170Q5SW79 1584 aa29.87■■■□□ 2.37
LINC01842-201ENST00000588275 ERCC6L2Q5T890 1561 aa29.85■■■□□ 2.37
LINC01842-201ENST00000588275 FHAD1B1AJZ9 1412 aa29.84■■■□□ 2.37
LINC01842-201ENST00000588275 NUP160Q12769 1436 aa29.83■■■□□ 2.37
LINC01842-201ENST00000588275 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
LINC01842-201ENST00000588275 SHROOM2Q13796 1616 aa29.71■■■□□ 2.35
LINC01842-201ENST00000588275 PRG4Q92954 1404 aaPredicted RBP29.59■■■□□ 2.33
LINC01842-201ENST00000588275 RUSC2Q8N2Y8 1516 aa29.55■■■□□ 2.32
LINC01842-201ENST00000588275 JPH4Q96JJ6 628 aa29.53■■■□□ 2.32
LINC01842-201ENST00000588275 KIF27Q86VH2 1401 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms