RNA–Protein interactions for RNA: ENST00000432519.5

RFTN1-203, Transcript of raftlin, lipid raft linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RFTN1, Length 2,695 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-203ENST00000432519 NISCHQ9Y2I1 1504 aa31.64■■■□□ 2.66
RFTN1-203ENST00000432519 CCDC180Q9P1Z9 1646 aa27.05■■□□□ 1.92
RFTN1-203ENST00000432519 SHROOM4Q9ULL8 1493 aa26.72■■□□□ 1.87
RFTN1-203ENST00000432519 ZCCHC6Q5VYS8 1495 aaKnown RBP26.69■■□□□ 1.86
RFTN1-203ENST00000432519 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
RFTN1-203ENST00000432519 SUPT5HO00267 1087 aaKnown RBP25.98■■□□□ 1.75
RFTN1-203ENST00000432519 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
RFTN1-203ENST00000432519 ABCC9O60706 1549 aa25.48■■□□□ 1.67
RFTN1-203ENST00000432519 SCRIBQ14160 1630 aa25.35■■□□□ 1.65
RFTN1-203ENST00000432519 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
RFTN1-203ENST00000432519 NACADO15069 1562 aa25.1■■□□□ 1.61
RFTN1-203ENST00000432519 CHIC1Q5VXU3 224 aa25.07■■□□□ 1.6
RFTN1-203ENST00000432519 RSF1Q96T23 1441 aaPredicted RBP24.91■■□□□ 1.58
RFTN1-203ENST00000432519 RB1CC1Q8TDY2 1594 aa24.78■■□□□ 1.56
RFTN1-203ENST00000432519 CECR2Q9BXF3 1484 aa24.77■■□□□ 1.56
RFTN1-203ENST00000432519 MROH2BQ7Z745 1585 aa24.62■■□□□ 1.53
RFTN1-203ENST00000432519 UNC13AQ9UPW8 1703 aa24.5■■□□□ 1.51
RFTN1-203ENST00000432519 WIZO95785 1651 aa24.47■■□□□ 1.51
RFTN1-203ENST00000432519 LOC105371045A0A1W2PR82 267 aa24.35■■□□□ 1.49
RFTN1-203ENST00000432519 PABPN1Q86U42 306 aaKnown RBP eCLIP24.31■■□□□ 1.48
RFTN1-203ENST00000432519 BAZ1AQ9NRL2 1556 aaPredicted RBP24.3■■□□□ 1.48
RFTN1-203ENST00000432519 BICRAQ9NZM4 1560 aa24.22■■□□□ 1.47
RFTN1-203ENST00000432519 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
RFTN1-203ENST00000432519 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
RFTN1-203ENST00000432519 FAM9AQ8IZU1 332 aaPredicted RBP24.03■■□□□ 1.44
RFTN1-203ENST00000432519 TOP2AP11388 1531 aaKnown RBP24.02■■□□□ 1.44
RFTN1-203ENST00000432519 EIF4G1Q04637 1599 aaKnown RBP23.96■■□□□ 1.43
RFTN1-203ENST00000432519 CCDC88BA6NC98 1476 aa23.95■■□□□ 1.42
RFTN1-203ENST00000432519 SMARCA2P51531 1590 aa23.91■■□□□ 1.42
RFTN1-203ENST00000432519 EHMT2Q96KQ7 1210 aa23.87■■□□□ 1.41
RFTN1-203ENST00000432519 PCGF6Q9BYE7 350 aa23.84■■□□□ 1.41
RFTN1-203ENST00000432519 ABCC8Q09428 1581 aa23.78■■□□□ 1.4
RFTN1-203ENST00000432519 PEG3Q9GZU2 1588 aa23.73■■□□□ 1.39
RFTN1-203ENST00000432519 ATAD2BQ9ULI0 1458 aa23.67■■□□□ 1.38
RFTN1-203ENST00000432519 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
RFTN1-203ENST00000432519 HRCP23327 699 aa23.51■■□□□ 1.35
RFTN1-203ENST00000432519 SOGA1O94964 1423 aa23.47■■□□□ 1.35
RFTN1-203ENST00000432519 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
RFTN1-203ENST00000432519 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
RFTN1-203ENST00000432519 WRNQ14191 1432 aaPredicted RBP eCLIP23.37■■□□□ 1.33
RFTN1-203ENST00000432519 SYNJ1O43426 1573 aa23.32■■□□□ 1.32
RFTN1-203ENST00000432519 PPARGC1BQ86YN6 1023 aaKnown RBP23.28■■□□□ 1.32
RFTN1-203ENST00000432519 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
RFTN1-203ENST00000432519 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
RFTN1-203ENST00000432519 HMGXB3Q12766 1538 aa23.21■■□□□ 1.31
RFTN1-203ENST00000432519 EEA1Q15075 1411 aa23.14■■□□□ 1.29
RFTN1-203ENST00000432519 CEP162Q5TB80 1403 aa23.11■■□□□ 1.29
RFTN1-203ENST00000432519 UBTFP17480 764 aaKnown RBP23.09■■□□□ 1.29
RFTN1-203ENST00000432519 TNIKQ9UKE5 1360 aa23.08■■□□□ 1.29
RFTN1-203ENST00000432519 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
RFTN1-203ENST00000432519 GOLGA3Q08378 1498 aa23.01■■□□□ 1.27
RFTN1-203ENST00000432519 CFTRP13569 1480 aa22.98■■□□□ 1.27
RFTN1-203ENST00000432519 TTBK1Q5TCY1 1321 aaPredicted RBP22.97■■□□□ 1.27
RFTN1-203ENST00000432519 BIVM-ERCC5R4GMW8 1640 aa22.94■■□□□ 1.26
RFTN1-203ENST00000432519 CUX1P39880 1505 aa22.94■■□□□ 1.26
RFTN1-203ENST00000432519 CC2D2AQ9P2K1 1620 aa22.93■■□□□ 1.26
RFTN1-203ENST00000432519 CEP164Q9UPV0 1460 aa22.92■■□□□ 1.26
RFTN1-203ENST00000432519 RAPGEF2Q9Y4G8 1499 aa22.91■■□□□ 1.26
RFTN1-203ENST00000432519 KIF21BO75037 1637 aa22.9■■□□□ 1.26
RFTN1-203ENST00000432519 RANGAP1P46060 587 aaPredicted RBP22.81■■□□□ 1.24
RFTN1-203ENST00000432519 CADPSQ9ULU8 1353 aa22.79■■□□□ 1.24
RFTN1-203ENST00000432519 CLIP1P30622 1438 aa22.76■■□□□ 1.23
RFTN1-203ENST00000432519 PRDM2Q13029 1718 aa22.73■■□□□ 1.23
RFTN1-203ENST00000432519 PRXQ9BXM0 1461 aa22.71■■□□□ 1.23
RFTN1-203ENST00000432519 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.67■■□□□ 1.22
RFTN1-203ENST00000432519 KIF27Q86VH2 1401 aa22.65■■□□□ 1.22
RFTN1-203ENST00000432519 DNAJC5BQ9UF47 199 aa22.63■■□□□ 1.21
RFTN1-203ENST00000432519 NESP48681 1621 aa22.62■■□□□ 1.21
RFTN1-203ENST00000432519 ZEB1P37275 1124 aaPredicted RBP22.61■■□□□ 1.21
RFTN1-203ENST00000432519 ERICH3Q5RHP9 1530 aa22.6■■□□□ 1.21
RFTN1-203ENST00000432519 VPS8Q8N3P4 1428 aa22.6■■□□□ 1.21
RFTN1-203ENST00000432519 FGD5Q6ZNL6 1462 aa22.57■■□□□ 1.2
RFTN1-203ENST00000432519 FANCD2Q9BXW9 1451 aa22.57■■□□□ 1.2
RFTN1-203ENST00000432519 CUX2O14529 1486 aa22.57■■□□□ 1.2
RFTN1-203ENST00000432519 IGF1RP08069 1367 aa22.51■■□□□ 1.19
RFTN1-203ENST00000432519 CCER1Q8TC90 406 aaPredicted RBP22.49■■□□□ 1.19
RFTN1-203ENST00000432519 ARAP1Q96P48 1450 aa22.48■■□□□ 1.19
RFTN1-203ENST00000432519 RAD54L2Q9Y4B4 1467 aa22.43■■□□□ 1.18
RFTN1-203ENST00000432519 TOPBP1Q92547 1522 aa22.4■■□□□ 1.18
RFTN1-203ENST00000432519 APLP2Q06481 763 aa22.39■■□□□ 1.18
RFTN1-203ENST00000432519 DNMBPQ6XZF7 1577 aa22.38■■□□□ 1.17
RFTN1-203ENST00000432519 CARMIL1Q5VZK9 1371 aa22.37■■□□□ 1.17
RFTN1-203ENST00000432519 POLA1P09884 1462 aaPredicted RBP22.37■■□□□ 1.17
RFTN1-203ENST00000432519 HNRNPUL2Q1KMD3 747 aaKnown RBP22.37■■□□□ 1.17
RFTN1-203ENST00000432519 ARHGAP35Q9NRY4 1499 aa22.36■■□□□ 1.17
RFTN1-203ENST00000432519 KANK4Q5T7N3 995 aaPredicted RBP22.34■■□□□ 1.17
RFTN1-203ENST00000432519 URB2Q14146 1524 aaKnown RBP22.31■■□□□ 1.16
RFTN1-203ENST00000432519 LAMC3Q9Y6N6 1575 aa22.31■■□□□ 1.16
RFTN1-203ENST00000432519 ABCA10Q8WWZ4 1543 aa22.28■■□□□ 1.16
RFTN1-203ENST00000432519 KIF21AQ7Z4S6 1674 aa22.19■■□□□ 1.14
RFTN1-203ENST00000432519 TDRD9Q8NDG6 1382 aaKnown RBP22.18■■□□□ 1.14
RFTN1-203ENST00000432519 P3H3Q8IVL6 736 aa22.17■■□□□ 1.14
RFTN1-203ENST00000432519 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
RFTN1-203ENST00000432519 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
RFTN1-203ENST00000432519 ABCA5Q8WWZ7 1642 aa22.05■■□□□ 1.12
RFTN1-203ENST00000432519 CUL7Q14999 1698 aa22.04■■□□□ 1.12
RFTN1-203ENST00000432519 FHOD3Q2V2M9 1422 aa22.04■■□□□ 1.12
RFTN1-203ENST00000432519 GAPVD1Q14C86 1478 aa22.03■■□□□ 1.12
RFTN1-203ENST00000432519 RRBP1Q9P2E9 1410 aaKnown RBP22.01■■□□□ 1.11
RFTN1-203ENST00000432519 TIAM1Q13009 1591 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms