RNA–Protein interactions for RNA: ENST00000424248.2

DENND3-202, Transcript of DENN domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene DENND3, Length 4,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND3-202ENST00000424248 NISCHQ9Y2I1 1504 aa24.16■■□□□ 1.46
DENND3-202ENST00000424248 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
DENND3-202ENST00000424248 SUPT5HO00267 1087 aaKnown RBP23.06■■□□□ 1.28
DENND3-202ENST00000424248 SHROOM4Q9ULL8 1493 aa22.72■■□□□ 1.23
DENND3-202ENST00000424248 PELP1Q8IZL8 1130 aaKnown RBP22.05■■□□□ 1.12
DENND3-202ENST00000424248 EHMT2Q96KQ7 1210 aa21.89■■□□□ 1.09
DENND3-202ENST00000424248 PCGF6Q9BYE7 350 aa21.84■■□□□ 1.09
DENND3-202ENST00000424248 APLP2Q06481 763 aa21.84■■□□□ 1.09
DENND3-202ENST00000424248 ZEB1P37275 1124 aaPredicted RBP21.81■■□□□ 1.08
DENND3-202ENST00000424248 FAM9AQ8IZU1 332 aaPredicted RBP21.64■■□□□ 1.05
DENND3-202ENST00000424248 CENPBP07199 599 aaPredicted RBP21.58■■□□□ 1.05
DENND3-202ENST00000424248 MYT1Q01538 1121 aa21.57■■□□□ 1.04
DENND3-202ENST00000424248 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
DENND3-202ENST00000424248 HRCP23327 699 aa21.35■■□□□ 1.01
DENND3-202ENST00000424248 CCER1Q8TC90 406 aaPredicted RBP21.21■□□□□ 0.99
DENND3-202ENST00000424248 TTBK1Q5TCY1 1321 aaPredicted RBP21.19■□□□□ 0.98
DENND3-202ENST00000424248 TRIM26Q12899 539 aaPredicted RBP21.15■□□□□ 0.98
DENND3-202ENST00000424248 UBTFP17480 764 aaKnown RBP21.13■□□□□ 0.97
DENND3-202ENST00000424248 RANGAP1P46060 587 aaPredicted RBP21.04■□□□□ 0.96
DENND3-202ENST00000424248 ERICH6Q7L0X2 663 aa20.9■□□□□ 0.94
DENND3-202ENST00000424248 ATP1B4Q9UN42 357 aaPredicted RBP20.9■□□□□ 0.94
DENND3-202ENST00000424248 CHIC1Q5VXU3 224 aa20.89■□□□□ 0.93
DENND3-202ENST00000424248 NEFLP07196 543 aa20.75■□□□□ 0.91
DENND3-202ENST00000424248 YTHDC1Q96MU7 727 aaKnown RBP20.67■□□□□ 0.9
DENND3-202ENST00000424248 LOC105371045A0A1W2PR82 267 aa20.58■□□□□ 0.88
DENND3-202ENST00000424248 PPARGC1BQ86YN6 1023 aaKnown RBP20.56■□□□□ 0.88
DENND3-202ENST00000424248 ABCC9O60706 1549 aa20.43■□□□□ 0.86
DENND3-202ENST00000424248 DIEXFQ68CQ4 756 aaKnown RBP20.37■□□□□ 0.85
DENND3-202ENST00000424248 ITGAEP38570 1179 aa20.27■□□□□ 0.84
DENND3-202ENST00000424248 HNRNPUL2Q1KMD3 747 aaKnown RBP20.25■□□□□ 0.83
DENND3-202ENST00000424248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.24■□□□□ 0.83
DENND3-202ENST00000424248 PABPN1Q86U42 306 aaKnown RBP eCLIP20.19■□□□□ 0.82
DENND3-202ENST00000424248 GTF3C3Q9Y5Q9 886 aa20.11■□□□□ 0.81
DENND3-202ENST00000424248 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
DENND3-202ENST00000424248 ACIN1Q9UKV3 1341 aaKnown RBP20.04■□□□□ 0.8
DENND3-202ENST00000424248 DCAF1Q9Y4B6 1507 aa20.03■□□□□ 0.8
DENND3-202ENST00000424248 MYT1LQ9UL68 1186 aa20.01■□□□□ 0.79
DENND3-202ENST00000424248 ZNF316A6NFI3 1004 aaPredicted RBP19.94■□□□□ 0.78
DENND3-202ENST00000424248 POLR3GLQ9BT43 218 aa19.91■□□□□ 0.78
DENND3-202ENST00000424248 DAXXQ9UER7 740 aaPredicted RBP19.91■□□□□ 0.78
DENND3-202ENST00000424248 FAM50AQ14320 339 aaKnown RBP19.9■□□□□ 0.78
DENND3-202ENST00000424248 CCDC180Q9P1Z9 1646 aa19.9■□□□□ 0.78
DENND3-202ENST00000424248 CLSPNQ9HAW4 1339 aa19.87■□□□□ 0.77
DENND3-202ENST00000424248 CSRNP3Q8WYN3 585 aa19.87■□□□□ 0.77
DENND3-202ENST00000424248 RTL5Q5HYW3 569 aaPredicted RBP19.8■□□□□ 0.76
DENND3-202ENST00000424248 SCRIBQ14160 1630 aa19.77■□□□□ 0.76
DENND3-202ENST00000424248 TRIM52Q96A61 297 aa19.74■□□□□ 0.75
DENND3-202ENST00000424248 ANP32CO43423 234 aa19.64■□□□□ 0.73
DENND3-202ENST00000424248 NEUROD1Q13562 356 aa19.64■□□□□ 0.73
DENND3-202ENST00000424248 CDK11AQ9UQ88 783 aaPredicted RBP19.64■□□□□ 0.73
DENND3-202ENST00000424248 CNGB1Q14028 1251 aaPredicted RBP19.6■□□□□ 0.73
DENND3-202ENST00000424248 BCANQ96GW7 911 aa19.54■□□□□ 0.72
DENND3-202ENST00000424248 FBLN2P98095 1184 aa19.52■□□□□ 0.72
DENND3-202ENST00000424248 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
DENND3-202ENST00000424248 SLC4A1APQ9BWU0 796 aaKnown RBP19.5■□□□□ 0.71
DENND3-202ENST00000424248 P3H3Q8IVL6 736 aa19.46■□□□□ 0.71
DENND3-202ENST00000424248 RB1CC1Q8TDY2 1594 aa19.4■□□□□ 0.7
DENND3-202ENST00000424248 ZNF326Q5BKZ1 582 aaKnown RBP19.39■□□□□ 0.7
DENND3-202ENST00000424248 MYO15BQ96JP2 1530 aa19.33■□□□□ 0.68
DENND3-202ENST00000424248 RSF1Q96T23 1441 aaPredicted RBP19.32■□□□□ 0.68
DENND3-202ENST00000424248 NACADO15069 1562 aa19.32■□□□□ 0.68
DENND3-202ENST00000424248 EEA1Q15075 1411 aa19.31■□□□□ 0.68
DENND3-202ENST00000424248 ANP32AP39687 249 aaKnown RBP19.29■□□□□ 0.68
DENND3-202ENST00000424248 FKBP8Q14318 412 aa19.26■□□□□ 0.67
DENND3-202ENST00000424248 ARID3CA6NKF2 412 aa19.25■□□□□ 0.67
DENND3-202ENST00000424248 ZNF777Q9ULD5 760 aaPredicted RBP19.23■□□□□ 0.67
DENND3-202ENST00000424248 TONSLQ96HA7 1378 aa19.23■□□□□ 0.67
DENND3-202ENST00000424248 CLIP1P30622 1438 aa19.19■□□□□ 0.66
DENND3-202ENST00000424248 MIER1Q8N108 512 aa19.15■□□□□ 0.66
DENND3-202ENST00000424248 GOLGA3Q08378 1498 aa19.12■□□□□ 0.65
DENND3-202ENST00000424248 WRNQ14191 1432 aaPredicted RBP eCLIP19.09■□□□□ 0.65
DENND3-202ENST00000424248 MTUS2Q5JR59 1369 aa19.08■□□□□ 0.64
DENND3-202ENST00000424248 NEFMP07197 916 aa19.07■□□□□ 0.64
DENND3-202ENST00000424248 DDX10Q13206 875 aaKnown RBP19.06■□□□□ 0.64
DENND3-202ENST00000424248 HNRNPUQ00839 825 aaKnown RBP eCLIP19.06■□□□□ 0.64
DENND3-202ENST00000424248 ZBTB47Q9UFB7 747 aaPredicted RBP19.05■□□□□ 0.64
DENND3-202ENST00000424248 BAZ1BQ9UIG0 1483 aaKnown RBP19.04■□□□□ 0.64
DENND3-202ENST00000424248 CEP162Q5TB80 1403 aa19.04■□□□□ 0.64
DENND3-202ENST00000424248 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
DENND3-202ENST00000424248 CANXP27824 592 aaKnown RBP19■□□□□ 0.63
DENND3-202ENST00000424248 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
DENND3-202ENST00000424248 NPM1P06748 294 aaKnown RBP eCLIP18.98■□□□□ 0.63
DENND3-202ENST00000424248 TSPY4P0CV99 314 aa18.98■□□□□ 0.63
DENND3-202ENST00000424248 TSPY10P0CW01 314 aa18.98■□□□□ 0.63
DENND3-202ENST00000424248 ANP32EQ9BTT0 268 aa18.97■□□□□ 0.63
DENND3-202ENST00000424248 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
DENND3-202ENST00000424248 KIF27Q86VH2 1401 aa18.97■□□□□ 0.63
DENND3-202ENST00000424248 CHIC2Q9UKJ5 165 aa18.95■□□□□ 0.62
DENND3-202ENST00000424248 CHMP7Q8WUX9 453 aaPredicted RBP18.94■□□□□ 0.62
DENND3-202ENST00000424248 ESF1Q9H501 851 aaKnown RBP18.9■□□□□ 0.62
DENND3-202ENST00000424248 NPM2Q86SE8 214 aaKnown RBP18.88■□□□□ 0.61
DENND3-202ENST00000424248 CCDC136Q96JN2 1154 aa18.88■□□□□ 0.61
DENND3-202ENST00000424248 FAM9BQ8IZU0 186 aa18.84■□□□□ 0.61
DENND3-202ENST00000424248 CHGAP10645 457 aaKnown RBP18.83■□□□□ 0.61
DENND3-202ENST00000424248 CECR2Q9BXF3 1484 aa18.83■□□□□ 0.6
DENND3-202ENST00000424248 STAG3Q9UJ98 1225 aa18.81■□□□□ 0.6
DENND3-202ENST00000424248 TMC1Q8TDI8 760 aa18.8■□□□□ 0.6
DENND3-202ENST00000424248 EIF4G2P78344 907 aaKnown RBP eCLIP18.79■□□□□ 0.6
DENND3-202ENST00000424248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.79■□□□□ 0.6
DENND3-202ENST00000424248 GLIPR1L2Q4G1C9 344 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms