RNA–Protein interactions for RNA: ENST00000453306.4

VCX3B-204, Transcript of variable charge X-linked 3B, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3B, Length 868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3B-204ENST00000453306 NISCHQ9Y2I1 1504 aa37.65■■■■□ 3.62
VCX3B-204ENST00000453306 ABCC9O60706 1549 aa33.84■■■■□ 3.01
VCX3B-204ENST00000453306 CCDC180Q9P1Z9 1646 aa33.82■■■■□ 3
VCX3B-204ENST00000453306 RB1CC1Q8TDY2 1594 aa32.25■■■□□ 2.75
VCX3B-204ENST00000453306 NACADO15069 1562 aa32.02■■■□□ 2.72
VCX3B-204ENST00000453306 DCAF8L2P0C7V8 631 aa31.86■■■□□ 2.69
VCX3B-204ENST00000453306 DNAJC5BQ9UF47 199 aa31.76■■■□□ 2.67
VCX3B-204ENST00000453306 MYO15BQ96JP2 1530 aa31.58■■■□□ 2.65
VCX3B-204ENST00000453306 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.63
VCX3B-204ENST00000453306 UNC13AQ9UPW8 1703 aa31.38■■■□□ 2.61
VCX3B-204ENST00000453306 BICRAQ9NZM4 1560 aa31.21■■■□□ 2.59
VCX3B-204ENST00000453306 ZCCHC6Q5VYS8 1495 aaKnown RBP31.18■■■□□ 2.58
VCX3B-204ENST00000453306 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.57
VCX3B-204ENST00000453306 SHROOM4Q9ULL8 1493 aa30.94■■■□□ 2.54
VCX3B-204ENST00000453306 SCRIBQ14160 1630 aa30.77■■■□□ 2.52
VCX3B-204ENST00000453306 CC2D2AQ9P2K1 1620 aa30.57■■■□□ 2.48
VCX3B-204ENST00000453306 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
VCX3B-204ENST00000453306 EIF4G1Q04637 1599 aaKnown RBP30.5■■■□□ 2.47
VCX3B-204ENST00000453306 NCAPD3P42695 1498 aa29.55■■■□□ 2.32
VCX3B-204ENST00000453306 DNAJC5Q9H3Z4 198 aa29.54■■■□□ 2.32
VCX3B-204ENST00000453306 ATAD2BQ9ULI0 1458 aa29.42■■■□□ 2.3
VCX3B-204ENST00000453306 SMARCA2P51531 1590 aa29.39■■■□□ 2.29
VCX3B-204ENST00000453306 SMARCA4P51532 1647 aa29.36■■■□□ 2.29
VCX3B-204ENST00000453306 HMGXB3Q12766 1538 aa29.32■■■□□ 2.28
VCX3B-204ENST00000453306 ERCC6Q03468 1493 aa29.3■■■□□ 2.28
VCX3B-204ENST00000453306 CUX2O14529 1486 aa29.27■■■□□ 2.28
VCX3B-204ENST00000453306 BAZ1AQ9NRL2 1556 aaPredicted RBP29.26■■■□□ 2.28
VCX3B-204ENST00000453306 BAZ1BQ9UIG0 1483 aaKnown RBP29.17■■■□□ 2.26
VCX3B-204ENST00000453306 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
VCX3B-204ENST00000453306 NESP48681 1621 aa29.02■■■□□ 2.24
VCX3B-204ENST00000453306 MROH2BQ7Z745 1585 aa28.97■■■□□ 2.23
VCX3B-204ENST00000453306 LAMC3Q9Y6N6 1575 aa28.9■■■□□ 2.22
VCX3B-204ENST00000453306 PDS5BQ9NTI5 1447 aa28.78■■■□□ 2.2
VCX3B-204ENST00000453306 THOC2Q8NI27 1593 aaKnown RBP28.75■■■□□ 2.19
VCX3B-204ENST00000453306 CADPSQ9ULU8 1353 aa28.66■■■□□ 2.18
VCX3B-204ENST00000453306 RSF1Q96T23 1441 aaPredicted RBP28.65■■■□□ 2.18
VCX3B-204ENST00000453306 KIF21AQ7Z4S6 1674 aa28.64■■■□□ 2.17
VCX3B-204ENST00000453306 WIZO95785 1651 aa28.61■■■□□ 2.17
VCX3B-204ENST00000453306 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
VCX3B-204ENST00000453306 WDR62O43379 1518 aa28.38■■■□□ 2.13
VCX3B-204ENST00000453306 CEP164Q9UPV0 1460 aa28.37■■■□□ 2.13
VCX3B-204ENST00000453306 FANCD2Q9BXW9 1451 aa28.32■■■□□ 2.12
VCX3B-204ENST00000453306 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
VCX3B-204ENST00000453306 CFTRP13569 1480 aa28.3■■■□□ 2.12
VCX3B-204ENST00000453306 SUPT5HO00267 1087 aaKnown RBP28.28■■■□□ 2.12
VCX3B-204ENST00000453306 TRIM41Q8WV44 630 aa28.13■■■□□ 2.09
VCX3B-204ENST00000453306 URB2Q14146 1524 aaKnown RBP28.04■■■□□ 2.08
VCX3B-204ENST00000453306 PRDM2Q13029 1718 aa27.97■■■□□ 2.07
VCX3B-204ENST00000453306 CCDC88BA6NC98 1476 aa27.96■■■□□ 2.07
VCX3B-204ENST00000453306 OSCARQ8IYS5 282 aa27.95■■■□□ 2.06
VCX3B-204ENST00000453306 IFT140Q96RY7 1462 aa27.82■■■□□ 2.04
VCX3B-204ENST00000453306 ABCC8Q09428 1581 aa27.79■■■□□ 2.04
VCX3B-204ENST00000453306 TOPBP1Q92547 1522 aa27.76■■■□□ 2.03
VCX3B-204ENST00000453306 ZNF608Q9ULD9 1512 aaPredicted RBP27.7■■■□□ 2.02
VCX3B-204ENST00000453306 DNMBPQ6XZF7 1577 aa27.66■■■□□ 2.02
VCX3B-204ENST00000453306 EIF4G3O43432 1585 aaKnown RBP27.56■■■□□ 2
VCX3B-204ENST00000453306 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
VCX3B-204ENST00000453306 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
VCX3B-204ENST00000453306 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
VCX3B-204ENST00000453306 TARBP1Q13395 1621 aaKnown RBP27.48■■□□□ 1.99
VCX3B-204ENST00000453306 POLA1P09884 1462 aaPredicted RBP27.47■■□□□ 1.99
VCX3B-204ENST00000453306 AQRO60306 1485 aaKnown RBP eCLIP27.46■■□□□ 1.99
VCX3B-204ENST00000453306 ARHGEF11O15085 1522 aa27.41■■□□□ 1.98
VCX3B-204ENST00000453306 SOGA1O94964 1423 aa27.38■■□□□ 1.97
VCX3B-204ENST00000453306 FBLN2P98095 1184 aa27.37■■□□□ 1.97
VCX3B-204ENST00000453306 RAD54L2Q9Y4B4 1467 aa27.34■■□□□ 1.97
VCX3B-204ENST00000453306 CHD1O14646 1710 aa27.33■■□□□ 1.96
VCX3B-204ENST00000453306 TDRD9Q8NDG6 1382 aaKnown RBP27.3■■□□□ 1.96
VCX3B-204ENST00000453306 WDR97A6NE52 1622 aa27.3■■□□□ 1.96
VCX3B-204ENST00000453306 FGD5Q6ZNL6 1462 aa27.29■■□□□ 1.96
VCX3B-204ENST00000453306 CYB5RLQ6IPT4 315 aa27.26■■□□□ 1.95
VCX3B-204ENST00000453306 CUX1P39880 1505 aa27.23■■□□□ 1.95
VCX3B-204ENST00000453306 SNAPC4Q5SXM2 1469 aa27.2■■□□□ 1.95
VCX3B-204ENST00000453306 CHMP7Q8WUX9 453 aaPredicted RBP27.18■■□□□ 1.94
VCX3B-204ENST00000453306 MAGI1Q96QZ7 1491 aaPredicted RBP27.17■■□□□ 1.94
VCX3B-204ENST00000453306 GRIN2BQ13224 1484 aa27.16■■□□□ 1.94
VCX3B-204ENST00000453306 ARAP1Q96P48 1450 aa27.13■■□□□ 1.93
VCX3B-204ENST00000453306 SYNJ1O43426 1573 aa27.09■■□□□ 1.93
VCX3B-204ENST00000453306 SYNJ2O15056 1496 aa27.06■■□□□ 1.92
VCX3B-204ENST00000453306 CLASP1Q7Z460 1538 aa27.05■■□□□ 1.92
VCX3B-204ENST00000453306 GAPVD1Q14C86 1478 aa27.04■■□□□ 1.92
VCX3B-204ENST00000453306 TRHP20396 242 aaPredicted RBP27.01■■□□□ 1.91
VCX3B-204ENST00000453306 ABCA10Q8WWZ4 1543 aa27■■□□□ 1.91
VCX3B-204ENST00000453306 PBRM1Q86U86 1689 aa26.97■■□□□ 1.91
VCX3B-204ENST00000453306 WRNQ14191 1432 aaPredicted RBP eCLIP26.92■■□□□ 1.9
VCX3B-204ENST00000453306 ABCA5Q8WWZ7 1642 aa26.92■■□□□ 1.9
VCX3B-204ENST00000453306 TOP2BQ02880 1626 aa26.81■■□□□ 1.88
VCX3B-204ENST00000453306 BIVM-ERCC5R4GMW8 1640 aa26.79■■□□□ 1.88
VCX3B-204ENST00000453306 GRIN2AQ12879 1464 aa26.78■■□□□ 1.88
VCX3B-204ENST00000453306 ADAMTS12P58397 1594 aa26.73■■□□□ 1.87
VCX3B-204ENST00000453306 FHAD1B1AJZ9 1412 aa26.72■■□□□ 1.87
VCX3B-204ENST00000453306 CHIC1Q5VXU3 224 aa26.7■■□□□ 1.86
VCX3B-204ENST00000453306 NUP160Q12769 1436 aa26.69■■□□□ 1.86
VCX3B-204ENST00000453306 ERICH3Q5RHP9 1530 aa26.68■■□□□ 1.86
VCX3B-204ENST00000453306 CEP170Q5SW79 1584 aa26.64■■□□□ 1.86
VCX3B-204ENST00000453306 ERCC6L2Q5T890 1561 aa26.57■■□□□ 1.84
VCX3B-204ENST00000453306 AEBP2Q6ZN18 517 aaPredicted RBP26.55■■□□□ 1.84
VCX3B-204ENST00000453306 SHROOM2Q13796 1616 aa26.54■■□□□ 1.84
VCX3B-204ENST00000453306 JPH4Q96JJ6 628 aa26.46■■□□□ 1.83
VCX3B-204ENST00000453306 PRG4Q92954 1404 aaPredicted RBP26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms