RNA–Protein interactions for RNA: ENST00000375618.8

C11orf88-202, Transcript of chromosome 11 open reading frame 88, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene C11orf88, Length 712 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88-202ENST00000375618 NISCHQ9Y2I1 1504 aa38.97■■■■□ 3.83
C11orf88-202ENST00000375618 CCDC180Q9P1Z9 1646 aa34.58■■■■□ 3.13
C11orf88-202ENST00000375618 ABCC9O60706 1549 aa33.89■■■■□ 3.02
C11orf88-202ENST00000375618 RB1CC1Q8TDY2 1594 aa32.52■■■□□ 2.8
C11orf88-202ENST00000375618 DCAF8L2P0C7V8 631 aa32.5■■■□□ 2.79
C11orf88-202ENST00000375618 NACADO15069 1562 aa32.49■■■□□ 2.79
C11orf88-202ENST00000375618 ZCCHC6Q5VYS8 1495 aaKnown RBP32.48■■■□□ 2.79
C11orf88-202ENST00000375618 MYO15BQ96JP2 1530 aa32.31■■■□□ 2.76
C11orf88-202ENST00000375618 DCAF1Q9Y4B6 1507 aa32.2■■■□□ 2.74
C11orf88-202ENST00000375618 UNC13AQ9UPW8 1703 aa31.87■■■□□ 2.69
C11orf88-202ENST00000375618 PABPN1Q86U42 306 aaKnown RBP eCLIP31.69■■■□□ 2.66
C11orf88-202ENST00000375618 BICRAQ9NZM4 1560 aa31.66■■■□□ 2.66
C11orf88-202ENST00000375618 SCRIBQ14160 1630 aa31.63■■■□□ 2.65
C11orf88-202ENST00000375618 SHROOM4Q9ULL8 1493 aa31.17■■■□□ 2.58
C11orf88-202ENST00000375618 DNAJC5BQ9UF47 199 aa31.17■■■□□ 2.58
C11orf88-202ENST00000375618 EIF4G1Q04637 1599 aaKnown RBP30.76■■■□□ 2.52
C11orf88-202ENST00000375618 CC2D2AQ9P2K1 1620 aa30.64■■■□□ 2.5
C11orf88-202ENST00000375618 CECR2Q9BXF3 1484 aa30.44■■■□□ 2.46
C11orf88-202ENST00000375618 SMARCA4P51532 1647 aa30.23■■■□□ 2.43
C11orf88-202ENST00000375618 BAZ1AQ9NRL2 1556 aaPredicted RBP30.15■■■□□ 2.42
C11orf88-202ENST00000375618 MROH2BQ7Z745 1585 aa30.09■■■□□ 2.41
C11orf88-202ENST00000375618 ATAD2BQ9ULI0 1458 aa30.07■■■□□ 2.4
C11orf88-202ENST00000375618 NCAPD3P42695 1498 aa30.02■■■□□ 2.4
C11orf88-202ENST00000375618 SMARCA2P51531 1590 aa29.96■■■□□ 2.39
C11orf88-202ENST00000375618 PEG3Q9GZU2 1588 aa29.92■■■□□ 2.38
C11orf88-202ENST00000375618 HMGXB3Q12766 1538 aa29.86■■■□□ 2.37
C11orf88-202ENST00000375618 BAZ1BQ9UIG0 1483 aaKnown RBP29.78■■■□□ 2.36
C11orf88-202ENST00000375618 WIZO95785 1651 aa29.75■■■□□ 2.35
C11orf88-202ENST00000375618 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
C11orf88-202ENST00000375618 TOP2AP11388 1531 aaKnown RBP29.4■■■□□ 2.3
C11orf88-202ENST00000375618 NESP48681 1621 aa29.38■■■□□ 2.29
C11orf88-202ENST00000375618 LAMC3Q9Y6N6 1575 aa29.19■■■□□ 2.26
C11orf88-202ENST00000375618 CADPSQ9ULU8 1353 aa29.14■■■□□ 2.26
C11orf88-202ENST00000375618 ERCC6Q03468 1493 aa29.12■■■□□ 2.25
C11orf88-202ENST00000375618 CCDC88BA6NC98 1476 aa29.08■■■□□ 2.25
C11orf88-202ENST00000375618 CFTRP13569 1480 aa28.99■■■□□ 2.23
C11orf88-202ENST00000375618 KIF21AQ7Z4S6 1674 aa28.98■■■□□ 2.23
C11orf88-202ENST00000375618 SUPT5HO00267 1087 aaKnown RBP28.97■■■□□ 2.23
C11orf88-202ENST00000375618 PDS5BQ9NTI5 1447 aa28.96■■■□□ 2.23
C11orf88-202ENST00000375618 THOC2Q8NI27 1593 aaKnown RBP28.88■■■□□ 2.21
C11orf88-202ENST00000375618 FANCD2Q9BXW9 1451 aa28.82■■■□□ 2.2
C11orf88-202ENST00000375618 CUX2O14529 1486 aa28.8■■■□□ 2.2
C11orf88-202ENST00000375618 CEP164Q9UPV0 1460 aa28.75■■■□□ 2.19
C11orf88-202ENST00000375618 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
C11orf88-202ENST00000375618 PRDM2Q13029 1718 aa28.72■■■□□ 2.19
C11orf88-202ENST00000375618 WDR62O43379 1518 aa28.65■■■□□ 2.18
C11orf88-202ENST00000375618 URB2Q14146 1524 aaKnown RBP28.59■■■□□ 2.17
C11orf88-202ENST00000375618 TOPBP1Q92547 1522 aa28.38■■■□□ 2.13
C11orf88-202ENST00000375618 DNMBPQ6XZF7 1577 aa28.33■■■□□ 2.12
C11orf88-202ENST00000375618 ABCC8Q09428 1581 aa28.27■■■□□ 2.12
C11orf88-202ENST00000375618 CUX1P39880 1505 aa28.22■■■□□ 2.11
C11orf88-202ENST00000375618 IFT140Q96RY7 1462 aa28.15■■■□□ 2.1
C11orf88-202ENST00000375618 POLA1P09884 1462 aaPredicted RBP28.15■■■□□ 2.1
C11orf88-202ENST00000375618 ZNF608Q9ULD9 1512 aaPredicted RBP28.12■■■□□ 2.09
C11orf88-202ENST00000375618 FGD5Q6ZNL6 1462 aa28.08■■■□□ 2.09
C11orf88-202ENST00000375618 TARBP1Q13395 1621 aaKnown RBP28.08■■■□□ 2.09
C11orf88-202ENST00000375618 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
C11orf88-202ENST00000375618 SOGA1O94964 1423 aa28■■■□□ 2.07
C11orf88-202ENST00000375618 WRNQ14191 1432 aaPredicted RBP eCLIP27.99■■■□□ 2.07
C11orf88-202ENST00000375618 SYNJ1O43426 1573 aa27.98■■■□□ 2.07
C11orf88-202ENST00000375618 EIF4G3O43432 1585 aaKnown RBP27.95■■■□□ 2.07
C11orf88-202ENST00000375618 DNAJC5Q9H3Z4 198 aa27.93■■■□□ 2.06
C11orf88-202ENST00000375618 AQRO60306 1485 aaKnown RBP eCLIP27.93■■■□□ 2.06
C11orf88-202ENST00000375618 TOP2BQ02880 1626 aa27.92■■■□□ 2.06
C11orf88-202ENST00000375618 BIVM-ERCC5R4GMW8 1640 aa27.92■■■□□ 2.06
C11orf88-202ENST00000375618 TDRD9Q8NDG6 1382 aaKnown RBP27.88■■■□□ 2.05
C11orf88-202ENST00000375618 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
C11orf88-202ENST00000375618 ABCA10Q8WWZ4 1543 aa27.79■■■□□ 2.04
C11orf88-202ENST00000375618 ABCA5Q8WWZ7 1642 aa27.7■■■□□ 2.03
C11orf88-202ENST00000375618 GAPVD1Q14C86 1478 aa27.67■■■□□ 2.02
C11orf88-202ENST00000375618 SNAPC4Q5SXM2 1469 aa27.66■■■□□ 2.02
C11orf88-202ENST00000375618 GRIN2BQ13224 1484 aa27.65■■■□□ 2.02
C11orf88-202ENST00000375618 PBRM1Q86U86 1689 aa27.62■■■□□ 2.01
C11orf88-202ENST00000375618 OSCARQ8IYS5 282 aa27.6■■■□□ 2.01
C11orf88-202ENST00000375618 CHD1O14646 1710 aa27.6■■■□□ 2.01
C11orf88-202ENST00000375618 MAGI1Q96QZ7 1491 aaPredicted RBP27.57■■■□□ 2
C11orf88-202ENST00000375618 FBLN2P98095 1184 aa27.52■■■□□ 2
C11orf88-202ENST00000375618 SYNJ2O15056 1496 aa27.47■■□□□ 1.99
C11orf88-202ENST00000375618 CHMP7Q8WUX9 453 aaPredicted RBP27.43■■□□□ 1.98
C11orf88-202ENST00000375618 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
C11orf88-202ENST00000375618 ERICH3Q5RHP9 1530 aa27.42■■□□□ 1.98
C11orf88-202ENST00000375618 KIF27Q86VH2 1401 aa27.36■■□□□ 1.97
C11orf88-202ENST00000375618 FHAD1B1AJZ9 1412 aa27.35■■□□□ 1.97
C11orf88-202ENST00000375618 GRIN2AQ12879 1464 aa27.32■■□□□ 1.96
C11orf88-202ENST00000375618 CLASP1Q7Z460 1538 aa27.32■■□□□ 1.96
C11orf88-202ENST00000375618 IGF1RP08069 1367 aa27.32■■□□□ 1.96
C11orf88-202ENST00000375618 TRIM41Q8WV44 630 aa27.29■■□□□ 1.96
C11orf88-202ENST00000375618 RUSC2Q8N2Y8 1516 aa27.26■■□□□ 1.96
C11orf88-202ENST00000375618 RIMBP3CA6NJZ7 1639 aa27.24■■□□□ 1.95
C11orf88-202ENST00000375618 RIMBP3BA6NNM3 1639 aa27.24■■□□□ 1.95
C11orf88-202ENST00000375618 RIMBP3Q9UFD9 1639 aa27.24■■□□□ 1.95
C11orf88-202ENST00000375618 CEP170Q5SW79 1584 aa27.23■■□□□ 1.95
C11orf88-202ENST00000375618 ARHGEF11O15085 1522 aa27.23■■□□□ 1.95
C11orf88-202ENST00000375618 NUP160Q12769 1436 aa27.22■■□□□ 1.95
C11orf88-202ENST00000375618 CUL7Q14999 1698 aa27.17■■□□□ 1.94
C11orf88-202ENST00000375618 CARMIL1Q5VZK9 1371 aa27.11■■□□□ 1.93
C11orf88-202ENST00000375618 CHIC1Q5VXU3 224 aa27.07■■□□□ 1.92
C11orf88-202ENST00000375618 ARAP1Q96P48 1450 aa27.05■■□□□ 1.92
C11orf88-202ENST00000375618 ERCC6L2Q5T890 1561 aa27.01■■□□□ 1.92
C11orf88-202ENST00000375618 SHROOM2Q13796 1616 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms