RNA–Protein interactions for RNA: ENST00000343256.9

MUC1-204, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best) BASIC

Gene MUC1, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-204ENST00000343256 NISCHQ9Y2I1 1504 aa45.51■■■■■ 4.88
MUC1-204ENST00000343256 ABCC9O60706 1549 aa42.04■■■■■ 4.32
MUC1-204ENST00000343256 CCDC180Q9P1Z9 1646 aa41.12■■■■■ 4.17
MUC1-204ENST00000343256 DNAJC5BQ9UF47 199 aa40.17■■■■■ 4.02
MUC1-204ENST00000343256 RB1CC1Q8TDY2 1594 aa39.55■■■■□ 3.92
MUC1-204ENST00000343256 NACADO15069 1562 aa39.07■■■■□ 3.84
MUC1-204ENST00000343256 PABPN1Q86U42 306 aaKnown RBP eCLIP39.05■■■■□ 3.84
MUC1-204ENST00000343256 DCAF8L2P0C7V8 631 aa38.88■■■■□ 3.81
MUC1-204ENST00000343256 UNC13AQ9UPW8 1703 aa38.72■■■■□ 3.79
MUC1-204ENST00000343256 BICRAQ9NZM4 1560 aa38.48■■■■□ 3.75
MUC1-204ENST00000343256 MYO15BQ96JP2 1530 aa38.21■■■■□ 3.71
MUC1-204ENST00000343256 CECR2Q9BXF3 1484 aa37.9■■■■□ 3.66
MUC1-204ENST00000343256 CC2D2AQ9P2K1 1620 aa37.89■■■■□ 3.66
MUC1-204ENST00000343256 SHROOM4Q9ULL8 1493 aa37.73■■■■□ 3.63
MUC1-204ENST00000343256 EIF4G1Q04637 1599 aaKnown RBP37.59■■■■□ 3.61
MUC1-204ENST00000343256 SCRIBQ14160 1630 aa37.55■■■■□ 3.6
MUC1-204ENST00000343256 ZCCHC6Q5VYS8 1495 aaKnown RBP37.54■■■■□ 3.6
MUC1-204ENST00000343256 DCAF1Q9Y4B6 1507 aa37.46■■■■□ 3.59
MUC1-204ENST00000343256 DNAJC5Q9H3Z4 198 aa37.37■■■■□ 3.57
MUC1-204ENST00000343256 CUX2O14529 1486 aa36.44■■■■□ 3.42
MUC1-204ENST00000343256 ERCC6Q03468 1493 aa36.31■■■■□ 3.4
MUC1-204ENST00000343256 NCAPD3P42695 1498 aa36.09■■■■□ 3.37
MUC1-204ENST00000343256 ATAD2BQ9ULI0 1458 aa35.92■■■■□ 3.34
MUC1-204ENST00000343256 NESP48681 1621 aa35.9■■■■□ 3.34
MUC1-204ENST00000343256 HMGXB3Q12766 1538 aa35.74■■■■□ 3.31
MUC1-204ENST00000343256 SMARCA2P51531 1590 aa35.72■■■■□ 3.31
MUC1-204ENST00000343256 SMARCA4P51532 1647 aa35.68■■■■□ 3.3
MUC1-204ENST00000343256 THOC2Q8NI27 1593 aaKnown RBP35.63■■■■□ 3.29
MUC1-204ENST00000343256 BAZ1BQ9UIG0 1483 aaKnown RBP35.53■■■■□ 3.28
MUC1-204ENST00000343256 TRIM41Q8WV44 630 aa35.51■■■■□ 3.28
MUC1-204ENST00000343256 LAMC3Q9Y6N6 1575 aa35.4■■■■□ 3.26
MUC1-204ENST00000343256 KIF21AQ7Z4S6 1674 aa35.37■■■■□ 3.25
MUC1-204ENST00000343256 BAZ1AQ9NRL2 1556 aaPredicted RBP35.35■■■■□ 3.25
MUC1-204ENST00000343256 PEG3Q9GZU2 1588 aa35.28■■■■□ 3.24
MUC1-204ENST00000343256 PDS5BQ9NTI5 1447 aa35.23■■■■□ 3.23
MUC1-204ENST00000343256 MROH2BQ7Z745 1585 aa35.11■■■■□ 3.21
MUC1-204ENST00000343256 MRC2Q9UBG0 1479 aa35.01■■■■□ 3.19
MUC1-204ENST00000343256 CADPSQ9ULU8 1353 aa34.99■■■■□ 3.19
MUC1-204ENST00000343256 WDR62O43379 1518 aa34.94■■■■□ 3.18
MUC1-204ENST00000343256 CEP164Q9UPV0 1460 aa34.71■■■■□ 3.15
MUC1-204ENST00000343256 OSCARQ8IYS5 282 aa34.68■■■■□ 3.14
MUC1-204ENST00000343256 WIZO95785 1651 aa34.66■■■■□ 3.14
MUC1-204ENST00000343256 FANCD2Q9BXW9 1451 aa34.62■■■■□ 3.13
MUC1-204ENST00000343256 CFTRP13569 1480 aa34.41■■■■□ 3.1
MUC1-204ENST00000343256 URB2Q14146 1524 aaKnown RBP34.4■■■■□ 3.1
MUC1-204ENST00000343256 RIMBP3CA6NJZ7 1639 aa34.36■■■■□ 3.09
MUC1-204ENST00000343256 RIMBP3BA6NNM3 1639 aa34.36■■■■□ 3.09
MUC1-204ENST00000343256 RIMBP3Q9UFD9 1639 aa34.36■■■■□ 3.09
MUC1-204ENST00000343256 ARHGEF11O15085 1522 aa34.16■■■■□ 3.06
MUC1-204ENST00000343256 ZNF608Q9ULD9 1512 aaPredicted RBP34.14■■■■□ 3.06
MUC1-204ENST00000343256 TOP2AP11388 1531 aaKnown RBP34.1■■■■□ 3.05
MUC1-204ENST00000343256 RSF1Q96T23 1441 aaPredicted RBP34.06■■■■□ 3.04
MUC1-204ENST00000343256 IFT140Q96RY7 1462 aa34.02■■■■□ 3.04
MUC1-204ENST00000343256 CYB5RLQ6IPT4 315 aa34■■■■□ 3.03
MUC1-204ENST00000343256 PRDM2Q13029 1718 aa33.99■■■■□ 3.03
MUC1-204ENST00000343256 TRHP20396 242 aaPredicted RBP33.88■■■■□ 3.01
MUC1-204ENST00000343256 TOPBP1Q92547 1522 aa33.88■■■■□ 3.01
MUC1-204ENST00000343256 EIF4G3O43432 1585 aaKnown RBP33.87■■■■□ 3.01
MUC1-204ENST00000343256 CHD1O14646 1710 aa33.79■■■■□ 3
MUC1-204ENST00000343256 ARAP1Q96P48 1450 aa33.78■■■■□ 3
MUC1-204ENST00000343256 CCDC88BA6NC98 1476 aa33.77■■■■□ 3
MUC1-204ENST00000343256 AQRO60306 1485 aaKnown RBP eCLIP33.72■■■□□ 2.99
MUC1-204ENST00000343256 FBLN2P98095 1184 aa33.68■■■□□ 2.98
MUC1-204ENST00000343256 ABCC8Q09428 1581 aa33.65■■■□□ 2.98
MUC1-204ENST00000343256 DNMBPQ6XZF7 1577 aa33.65■■■□□ 2.98
MUC1-204ENST00000343256 TARBP1Q13395 1621 aaKnown RBP33.62■■■□□ 2.97
MUC1-204ENST00000343256 POLA1P09884 1462 aaPredicted RBP33.48■■■□□ 2.95
MUC1-204ENST00000343256 AEBP2Q6ZN18 517 aaPredicted RBP33.45■■■□□ 2.95
MUC1-204ENST00000343256 RAD54L2Q9Y4B4 1467 aa33.44■■■□□ 2.94
MUC1-204ENST00000343256 TDRD9Q8NDG6 1382 aaKnown RBP33.39■■■□□ 2.94
MUC1-204ENST00000343256 CLASP1Q7Z460 1538 aa33.34■■■□□ 2.93
MUC1-204ENST00000343256 SNAPC4Q5SXM2 1469 aa33.34■■■□□ 2.93
MUC1-204ENST00000343256 SOGA1O94964 1423 aa33.31■■■□□ 2.92
MUC1-204ENST00000343256 CHMP7Q8WUX9 453 aaPredicted RBP33.25■■■□□ 2.91
MUC1-204ENST00000343256 SYNJ1O43426 1573 aa33.23■■■□□ 2.91
MUC1-204ENST00000343256 FGD5Q6ZNL6 1462 aa33.18■■■□□ 2.9
MUC1-204ENST00000343256 MAGI1Q96QZ7 1491 aaPredicted RBP33.14■■■□□ 2.9
MUC1-204ENST00000343256 WDR97A6NE52 1622 aa33.13■■■□□ 2.89
MUC1-204ENST00000343256 GRIN2BQ13224 1484 aa33.09■■■□□ 2.89
MUC1-204ENST00000343256 SYNJ2O15056 1496 aa33.06■■■□□ 2.88
MUC1-204ENST00000343256 GAPVD1Q14C86 1478 aa33.05■■■□□ 2.88
MUC1-204ENST00000343256 CUX1P39880 1505 aa33.02■■■□□ 2.88
MUC1-204ENST00000343256 PBRM1Q86U86 1689 aa32.94■■■□□ 2.86
MUC1-204ENST00000343256 ERCC6L2Q5T890 1561 aa32.85■■■□□ 2.85
MUC1-204ENST00000343256 ABCA5Q8WWZ7 1642 aa32.74■■■□□ 2.83
MUC1-204ENST00000343256 ABCA10Q8WWZ4 1543 aa32.71■■■□□ 2.83
MUC1-204ENST00000343256 GRIN2AQ12879 1464 aa32.67■■■□□ 2.82
MUC1-204ENST00000343256 CEP170Q5SW79 1584 aa32.66■■■□□ 2.82
MUC1-204ENST00000343256 NUP160Q12769 1436 aa32.59■■■□□ 2.81
MUC1-204ENST00000343256 KIF13AQ9H1H9 1805 aa32.57■■■□□ 2.8
MUC1-204ENST00000343256 ADAMTS12P58397 1594 aa32.57■■■□□ 2.8
MUC1-204ENST00000343256 SHROOM2Q13796 1616 aa32.52■■■□□ 2.8
MUC1-204ENST00000343256 FHAD1B1AJZ9 1412 aa32.42■■■□□ 2.78
MUC1-204ENST00000343256 WRNQ14191 1432 aaPredicted RBP eCLIP32.41■■■□□ 2.78
MUC1-204ENST00000343256 PRG4Q92954 1404 aaPredicted RBP32.37■■■□□ 2.77
MUC1-204ENST00000343256 FAM69CQ0P6D2 419 aa32.34■■■□□ 2.77
MUC1-204ENST00000343256 JPH4Q96JJ6 628 aa32.28■■■□□ 2.76
MUC1-204ENST00000343256 ABCC10Q5T3U5 1492 aa32.28■■■□□ 2.76
MUC1-204ENST00000343256 ERICH3Q5RHP9 1530 aa32.26■■■□□ 2.75
MUC1-204ENST00000343256 BIVM-ERCC5R4GMW8 1640 aa32.24■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms