RNA–Protein interactions for RNA: ENST00000417496.6

HDAC9-208, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-208ENST00000417496 NISCHQ9Y2I1 1504 aa29.7■■■□□ 2.34
HDAC9-208ENST00000417496 SHROOM4Q9ULL8 1493 aa25.7■■□□□ 1.71
HDAC9-208ENST00000417496 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
HDAC9-208ENST00000417496 ZCCHC6Q5VYS8 1495 aaKnown RBP25.1■■□□□ 1.61
HDAC9-208ENST00000417496 CCDC180Q9P1Z9 1646 aa25■■□□□ 1.59
HDAC9-208ENST00000417496 DCAF8L2P0C7V8 631 aa24.99■■□□□ 1.59
HDAC9-208ENST00000417496 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
HDAC9-208ENST00000417496 MYO15BQ96JP2 1530 aa24.4■■□□□ 1.5
HDAC9-208ENST00000417496 DCAF1Q9Y4B6 1507 aa24.2■■□□□ 1.47
HDAC9-208ENST00000417496 PCGF6Q9BYE7 350 aa23.92■■□□□ 1.42
HDAC9-208ENST00000417496 LOC105371045A0A1W2PR82 267 aa23.9■■□□□ 1.42
HDAC9-208ENST00000417496 HRCP23327 699 aa23.84■■□□□ 1.41
HDAC9-208ENST00000417496 SCRIBQ14160 1630 aa23.71■■□□□ 1.39
HDAC9-208ENST00000417496 ABCC9O60706 1549 aa23.67■■□□□ 1.38
HDAC9-208ENST00000417496 RSF1Q96T23 1441 aaPredicted RBP23.62■■□□□ 1.37
HDAC9-208ENST00000417496 PPARGC1BQ86YN6 1023 aaKnown RBP23.54■■□□□ 1.36
HDAC9-208ENST00000417496 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
HDAC9-208ENST00000417496 FAM9AQ8IZU1 332 aaPredicted RBP23.38■■□□□ 1.33
HDAC9-208ENST00000417496 RB1CC1Q8TDY2 1594 aa23.36■■□□□ 1.33
HDAC9-208ENST00000417496 EHMT2Q96KQ7 1210 aa23.31■■□□□ 1.32
HDAC9-208ENST00000417496 CECR2Q9BXF3 1484 aa23.3■■□□□ 1.32
HDAC9-208ENST00000417496 TRIM26Q12899 539 aaPredicted RBP23.29■■□□□ 1.32
HDAC9-208ENST00000417496 NACADO15069 1562 aa23.19■■□□□ 1.3
HDAC9-208ENST00000417496 MROH2BQ7Z745 1585 aa23.17■■□□□ 1.3
HDAC9-208ENST00000417496 WIZO95785 1651 aa23.03■■□□□ 1.28
HDAC9-208ENST00000417496 BAZ1AQ9NRL2 1556 aaPredicted RBP22.76■■□□□ 1.23
HDAC9-208ENST00000417496 ZEB1P37275 1124 aaPredicted RBP22.71■■□□□ 1.23
HDAC9-208ENST00000417496 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
HDAC9-208ENST00000417496 ABCC8Q09428 1581 aa22.62■■□□□ 1.21
HDAC9-208ENST00000417496 CCDC88BA6NC98 1476 aa22.6■■□□□ 1.21
HDAC9-208ENST00000417496 PABPN1Q86U42 306 aaKnown RBP eCLIP22.58■■□□□ 1.2
HDAC9-208ENST00000417496 TOP2AP11388 1531 aaKnown RBP22.57■■□□□ 1.2
HDAC9-208ENST00000417496 SMARCA4P51532 1647 aa22.56■■□□□ 1.2
HDAC9-208ENST00000417496 TTBK1Q5TCY1 1321 aaPredicted RBP22.54■■□□□ 1.2
HDAC9-208ENST00000417496 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.51■■□□□ 1.19
HDAC9-208ENST00000417496 SMARCA2P51531 1590 aa22.49■■□□□ 1.19
HDAC9-208ENST00000417496 UNC13AQ9UPW8 1703 aa22.47■■□□□ 1.19
HDAC9-208ENST00000417496 SOGA1O94964 1423 aa22.47■■□□□ 1.19
HDAC9-208ENST00000417496 CCER1Q8TC90 406 aaPredicted RBP22.38■■□□□ 1.17
HDAC9-208ENST00000417496 RUSC2Q8N2Y8 1516 aa22.37■■□□□ 1.17
HDAC9-208ENST00000417496 CEP162Q5TB80 1403 aa22.33■■□□□ 1.17
HDAC9-208ENST00000417496 UBTFP17480 764 aaKnown RBP22.33■■□□□ 1.17
HDAC9-208ENST00000417496 CSRNP3Q8WYN3 585 aa22.32■■□□□ 1.16
HDAC9-208ENST00000417496 BICRAQ9NZM4 1560 aa22.26■■□□□ 1.15
HDAC9-208ENST00000417496 TNIKQ9UKE5 1360 aa22.24■■□□□ 1.15
HDAC9-208ENST00000417496 WRNQ14191 1432 aaPredicted RBP eCLIP22.22■■□□□ 1.15
HDAC9-208ENST00000417496 EEA1Q15075 1411 aa22.13■■□□□ 1.13
HDAC9-208ENST00000417496 SCAF1Q9H7N4 1312 aaKnown RBP22.1■■□□□ 1.13
HDAC9-208ENST00000417496 GOLGA3Q08378 1498 aa22.07■■□□□ 1.12
HDAC9-208ENST00000417496 PEG3Q9GZU2 1588 aa22.04■■□□□ 1.12
HDAC9-208ENST00000417496 SYNJ1O43426 1573 aa22.04■■□□□ 1.12
HDAC9-208ENST00000417496 RANGAP1P46060 587 aaPredicted RBP22.04■■□□□ 1.12
HDAC9-208ENST00000417496 ATAD2BQ9ULI0 1458 aa22.03■■□□□ 1.12
HDAC9-208ENST00000417496 BAZ1BQ9UIG0 1483 aaKnown RBP21.98■■□□□ 1.11
HDAC9-208ENST00000417496 DIEXFQ68CQ4 756 aaKnown RBP21.96■■□□□ 1.11
HDAC9-208ENST00000417496 HNRNPUL2Q1KMD3 747 aaKnown RBP21.94■■□□□ 1.1
HDAC9-208ENST00000417496 CEP164Q9UPV0 1460 aa21.92■■□□□ 1.1
HDAC9-208ENST00000417496 CLIP1P30622 1438 aa21.9■■□□□ 1.1
HDAC9-208ENST00000417496 RAPGEF2Q9Y4G8 1499 aa21.87■■□□□ 1.09
HDAC9-208ENST00000417496 NEUROD1Q13562 356 aa21.85■■□□□ 1.09
HDAC9-208ENST00000417496 KIF21BO75037 1637 aa21.82■■□□□ 1.08
HDAC9-208ENST00000417496 ACIN1Q9UKV3 1341 aaKnown RBP21.79■■□□□ 1.08
HDAC9-208ENST00000417496 APLP2Q06481 763 aa21.78■■□□□ 1.08
HDAC9-208ENST00000417496 VPS8Q8N3P4 1428 aa21.77■■□□□ 1.08
HDAC9-208ENST00000417496 ZNF316A6NFI3 1004 aaPredicted RBP21.73■■□□□ 1.07
HDAC9-208ENST00000417496 TOP2BQ02880 1626 aa21.68■■□□□ 1.06
HDAC9-208ENST00000417496 GTF3C3Q9Y5Q9 886 aa21.62■■□□□ 1.05
HDAC9-208ENST00000417496 CENPBP07199 599 aaPredicted RBP21.6■■□□□ 1.05
HDAC9-208ENST00000417496 KANK4Q5T7N3 995 aaPredicted RBP21.58■■□□□ 1.04
HDAC9-208ENST00000417496 YTHDC1Q96MU7 727 aaKnown RBP21.57■■□□□ 1.04
HDAC9-208ENST00000417496 PRXQ9BXM0 1461 aa21.55■■□□□ 1.04
HDAC9-208ENST00000417496 NCAPD3P42695 1498 aa21.54■■□□□ 1.04
HDAC9-208ENST00000417496 BIVM-ERCC5R4GMW8 1640 aa21.54■■□□□ 1.04
HDAC9-208ENST00000417496 MIER1Q8N108 512 aa21.53■■□□□ 1.04
HDAC9-208ENST00000417496 CUX1P39880 1505 aa21.53■■□□□ 1.04
HDAC9-208ENST00000417496 ARAP1Q96P48 1450 aa21.5■■□□□ 1.03
HDAC9-208ENST00000417496 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.03
HDAC9-208ENST00000417496 KIF27Q86VH2 1401 aa21.45■■□□□ 1.02
HDAC9-208ENST00000417496 HMGXB3Q12766 1538 aa21.45■■□□□ 1.02
HDAC9-208ENST00000417496 PELP1Q8IZL8 1130 aaKnown RBP21.45■■□□□ 1.02
HDAC9-208ENST00000417496 CFTRP13569 1480 aa21.42■■□□□ 1.02
HDAC9-208ENST00000417496 ITGAEP38570 1179 aa21.37■■□□□ 1.01
HDAC9-208ENST00000417496 DHX57Q6P158 1386 aaKnown RBP21.37■■□□□ 1.01
HDAC9-208ENST00000417496 ARHGAP35Q9NRY4 1499 aa21.32■■□□□ 1
HDAC9-208ENST00000417496 IGF1RP08069 1367 aa21.29■■□□□ 1
HDAC9-208ENST00000417496 CUX2O14529 1486 aa21.28■■□□□ 1
HDAC9-208ENST00000417496 RRBP1Q9P2E9 1410 aaKnown RBP21.25■□□□□ 0.99
HDAC9-208ENST00000417496 CCNB3Q8WWL7 1395 aa21.23■□□□□ 0.99
HDAC9-208ENST00000417496 CLSPNQ9HAW4 1339 aa21.22■□□□□ 0.99
HDAC9-208ENST00000417496 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
HDAC9-208ENST00000417496 P3H3Q8IVL6 736 aa21.2■□□□□ 0.98
HDAC9-208ENST00000417496 CARMIL1Q5VZK9 1371 aa21.18■□□□□ 0.98
HDAC9-208ENST00000417496 FGD5Q6ZNL6 1462 aa21.15■□□□□ 0.98
HDAC9-208ENST00000417496 ATP1B4Q9UN42 357 aaPredicted RBP21.14■□□□□ 0.98
HDAC9-208ENST00000417496 RAB3GAP2Q9H2M9 1393 aa21.09■□□□□ 0.97
HDAC9-208ENST00000417496 FAM50AQ14320 339 aaKnown RBP21.07■□□□□ 0.96
HDAC9-208ENST00000417496 PHLDB1Q86UU1 1377 aa21.05■□□□□ 0.96
HDAC9-208ENST00000417496 TIAM1Q13009 1591 aa21.03■□□□□ 0.96
HDAC9-208ENST00000417496 PRDM2Q13029 1718 aa21.01■□□□□ 0.95
HDAC9-208ENST00000417496 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms