Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.03■□□□□ 0.965e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-213ENST00000540634 1320 ntTSL 520.5■□□□□ 0.875e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-205ENST00000595348 368 ntTSL 220.15■□□□□ 0.825e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-203ENST00000593661 512 ntTSL 320.06■□□□□ 0.85e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.775e-12■■■■□ 21.4
DDX55Q8NHQ9 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.75e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.75■□□□□ 0.595e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-205ENST00000535478 762 ntTSL 317.95■□□□□ 0.465e-12■■■■□ 21.4
DDX55Q8NHQ9 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.17■□□□□ 0.345e-12■■■■□ 21.4
DDX55Q8NHQ9 ZC3H18-202ENST00000452588 3211 ntTSL 2 BASIC13.24□□□□□ -0.293e-6■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-218ENST00000599589 2636 ntTSL 1 (best)20.16■□□□□ 0.829e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-213ENST00000595897 2973 ntTSL 1 (best)18.02■□□□□ 0.489e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.52■□□□□ 0.239e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.29e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.059e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.25■□□□□ 0.039e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-203ENST00000354532 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.259e-7■■■■□ 21.4
DDX55Q8NHQ9 ARHGEF1-220ENST00000600274 3439 ntTSL 1 (best)12.29□□□□□ -0.449e-7■■■■□ 21.4
DDX55Q8NHQ9 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC8.25□□□□□ -1.095e-7■■■■□ 21.4
DDX55Q8NHQ9 CNOT1-204ENST00000563130 2280 ntTSL 27.48□□□□□ -1.215e-7■■■■□ 21.4
DDX55Q8NHQ9 CNOT1-211ENST00000567188 7830 ntTSL 1 (best)6.83□□□□□ -1.325e-7■■■■□ 21.4
DDX55Q8NHQ9 CLNS1A-201ENST00000263309 1172 ntTSL 3 BASIC14.92□□□□□ -0.023e-7■■■■□ 21.4
DDX55Q8NHQ9 CLNS1A-202ENST00000525064 1121 ntTSL 3 BASIC14.74□□□□□ -0.053e-7■■■■□ 21.4
DDX55Q8NHQ9 CLNS1A-204ENST00000525428 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.513e-7■■■■□ 21.4
DDX55Q8NHQ9 CLNS1A-205ENST00000526009 747 ntTSL 39.5□□□□□ -0.893e-7■■■■□ 21.4
DDX55Q8NHQ9 CLNS1A-206ENST00000526761 415 ntTSL 39.14□□□□□ -0.953e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-213ENST00000527623 1215 ntTSL 225.2■■□□□ 1.625e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-211ENST00000525507 1300 ntTSL 224.52■■□□□ 1.525e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.365e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC22.06■■□□□ 1.125e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-206ENST00000486994 2209 ntTSL 220.19■□□□□ 0.825e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-205ENST00000478046 1886 ntTSL 1 (best)17.35■□□□□ 0.375e-7■■■■□ 21.4
DDX55Q8NHQ9 PPP5C-207ENST00000487483 4675 ntTSL 515.71■□□□□ 0.115e-7■■■■□ 21.4
DDX55Q8NHQ9 FIS1-206ENST00000473527 1005 ntTSL 1 (best)22.51■■□□□ 1.197e-12■■■■□ 21.3
DDX55Q8NHQ9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.51■■□□□ 1.197e-12■■■■□ 21.3
DDX55Q8NHQ9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC21.17■□□□□ 0.987e-12■■■■□ 21.3
DDX55Q8NHQ9 FIS1-204ENST00000449367 745 ntTSL 220.02■□□□□ 0.87e-12■■■■□ 21.3
DDX55Q8NHQ9 FIS1-202ENST00000435848 692 ntTSL 518.08■□□□□ 0.487e-12■■■■□ 21.3
DDX55Q8NHQ9 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.47e-12■■■■□ 21.3
DDX55Q8NHQ9 TNKS1BP1-202ENST00000427750 1946 ntTSL 222.79■■□□□ 1.241e-6■■■■□ 21.3
DDX55Q8NHQ9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51e-6■■■■□ 21.3
DDX55Q8NHQ9 TNKS1BP1-206ENST00000532273 592 ntTSL 217.57■□□□□ 0.41e-6■■■■□ 21.3
DDX55Q8NHQ9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.331e-6■■■■□ 21.3
DDX55Q8NHQ9 TNKS1BP1-204ENST00000528882 4336 ntTSL 516.61■□□□□ 0.251e-6■■■■□ 21.3
DDX55Q8NHQ9 AAMP-203ENST00000422731 742 ntTSL 316.13■□□□□ 0.173e-11■■■■□ 21.3
DDX55Q8NHQ9 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.75■■■□□ 2.832e-9■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-222ENST00000575009 1146 ntTSL 531.94■■■□□ 2.73e-6■■■■□ 21.3
DDX55Q8NHQ9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.293e-6■■■■□ 21.3
DDX55Q8NHQ9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.8■■■□□ 2.23e-6■■■■□ 21.3
DDX55Q8NHQ9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC28.12■■■□□ 2.093e-6■■■■□ 21.3
DDX55Q8NHQ9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC27.72■■■□□ 2.035e-9■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC27.54■■■□□ 23e-6■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.991e-6■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC27.47■■□□□ 1.991e-6■■■■□ 21.3
DDX55Q8NHQ9 PABPN1-206ENST00000556809 969 ntTSL 227.41■■□□□ 1.983e-6■■■■□ 21.3
DDX55Q8NHQ9 COL9A2-203ENST00000417105 677 ntTSL 527.3■■□□□ 1.963e-6■■■■□ 21.3
DDX55Q8NHQ9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC27.28■■□□□ 1.967e-9■■■■□ 21.3
DDX55Q8NHQ9 TUSC2-205ENST00000462137 834 ntTSL 326.81■■□□□ 1.883e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-203ENST00000586146 1707 ntTSL 526.14■■□□□ 1.777e-9■■■■□ 21.3
DDX55Q8NHQ9 COX20-201ENST00000366528 568 ntTSL 2 BASIC26.07■■□□□ 1.763e-6■■■■□ 21.3
DDX55Q8NHQ9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.662e-9■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-208ENST00000495581 911 ntTSL 225.33■■□□□ 1.653e-6■■■■□ 21.3
DDX55Q8NHQ9 SGPL1-204ENST00000486993 537 ntTSL 1 (best)25.22■■□□□ 1.637e-9■■■■□ 21.3
DDX55Q8NHQ9 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.53e-6■■■■□ 21.3
DDX55Q8NHQ9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.493e-6■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.21■■□□□ 1.473e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.437e-9■■■■□ 21.3
DDX55Q8NHQ9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.43e-6■■■■□ 21.3
DDX55Q8NHQ9 KIFC3-221ENST00000565397 810 ntTSL 323.59■■□□□ 1.373e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-230ENST00000489430 847 ntTSL 523.3■■□□□ 1.323e-6■■■■□ 21.3
DDX55Q8NHQ9 NDUFA2-202ENST00000502960 721 ntTSL 223.26■■□□□ 1.314e-13■■■■□ 21.3
DDX55Q8NHQ9 MPC2-203ENST00000458574 645 ntTSL 522.85■■□□□ 1.253e-6■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-210ENST00000637920 1093 ntTSL 222.84■■□□□ 1.251e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-208ENST00000588965 1831 ntTSL 522.68■■□□□ 1.227e-9■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC22.58■■□□□ 1.211e-6■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-203ENST00000413013 806 ntTSL 222.03■■□□□ 1.121e-6■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-229ENST00000576894 2210 ntTSL 1 (best)21.94■■□□□ 1.13e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.86■■□□□ 1.097e-9■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC21.58■■□□□ 1.051e-6■■■■□ 21.3
DDX55Q8NHQ9 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.5■■□□□ 1.033e-6■■■■□ 21.3
DDX55Q8NHQ9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.38■■□□□ 1.017e-9■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-204ENST00000463083 1487 ntTSL 221.23■□□□□ 0.991e-6■■■■□ 21.3
DDX55Q8NHQ9 PNKD-205ENST00000469689 1372 ntTSL 221.14■□□□□ 0.982e-7■■■■□ 21.3
DDX55Q8NHQ9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.979e-10■■■■□ 21.3
DDX55Q8NHQ9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.961e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-222ENST00000457264 544 ntTSL 321.03■□□□□ 0.963e-6■■■■□ 21.3
DDX55Q8NHQ9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.963e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.933e-6■■■■□ 21.3
DDX55Q8NHQ9 UBOX5-203ENST00000449731 524 ntTSL 520.79■□□□□ 0.923e-6■■■■□ 21.3
DDX55Q8NHQ9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.49■□□□□ 0.877e-9■■■■□ 21.3
DDX55Q8NHQ9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.853e-6■■■■□ 21.3
DDX55Q8NHQ9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.24■□□□□ 0.833e-6■■■■□ 21.3
DDX55Q8NHQ9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.23■□□□□ 0.833e-6■■■■□ 21.3
DDX55Q8NHQ9 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.823e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.813e-6■■■■□ 21.3
DDX55Q8NHQ9 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.89■□□□□ 0.772e-7■■■■□ 21.3
DDX55Q8NHQ9 SRRM2-225ENST00000576076 914 nt19.8■□□□□ 0.763e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.753e-6■■■■□ 21.3
DDX55Q8NHQ9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.743e-6■■■■□ 21.3
DDX55Q8NHQ9 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.733e-6■■■■□ 21.3
Retrieved 100 of 15,504 protein–RNA pairs in 105.1 ms