RNA–Protein interactions for RNA: ENST00000361909.8

CMTM3-201, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-201ENST00000361909 NISCHQ9Y2I1 1504 aa40.67■■■■■ 4.1
CMTM3-201ENST00000361909 CCDC180Q9P1Z9 1646 aa35.51■■■■□ 3.27
CMTM3-201ENST00000361909 ZCCHC6Q5VYS8 1495 aaKnown RBP34.17■■■■□ 3.06
CMTM3-201ENST00000361909 DCAF1Q9Y4B6 1507 aa33.71■■■□□ 2.99
CMTM3-201ENST00000361909 DCAF8L2P0C7V8 631 aa33.46■■■□□ 2.95
CMTM3-201ENST00000361909 ABCC9O60706 1549 aa33.44■■■□□ 2.94
CMTM3-201ENST00000361909 MYO15BQ96JP2 1530 aa33.34■■■□□ 2.93
CMTM3-201ENST00000361909 NACADO15069 1562 aa33.08■■■□□ 2.89
CMTM3-201ENST00000361909 SHROOM4Q9ULL8 1493 aa33.02■■■□□ 2.88
CMTM3-201ENST00000361909 RB1CC1Q8TDY2 1594 aa32.76■■■□□ 2.83
CMTM3-201ENST00000361909 SCRIBQ14160 1630 aa32.53■■■□□ 2.8
CMTM3-201ENST00000361909 UNC13AQ9UPW8 1703 aa32.06■■■□□ 2.72
CMTM3-201ENST00000361909 SUPT5HO00267 1087 aaKnown RBP31.81■■■□□ 2.68
CMTM3-201ENST00000361909 HRCP23327 699 aa31.81■■■□□ 2.68
CMTM3-201ENST00000361909 BICRAQ9NZM4 1560 aa31.74■■■□□ 2.67
CMTM3-201ENST00000361909 CECR2Q9BXF3 1484 aa31.54■■■□□ 2.64
CMTM3-201ENST00000361909 RSF1Q96T23 1441 aaPredicted RBP31.53■■■□□ 2.64
CMTM3-201ENST00000361909 PABPN1Q86U42 306 aaKnown RBP eCLIP31.51■■■□□ 2.64
CMTM3-201ENST00000361909 BAZ1AQ9NRL2 1556 aaPredicted RBP31.42■■■□□ 2.62
CMTM3-201ENST00000361909 MROH2BQ7Z745 1585 aa31.38■■■□□ 2.61
CMTM3-201ENST00000361909 SMARCA4P51532 1647 aa31.25■■■□□ 2.59
CMTM3-201ENST00000361909 CHIC1Q5VXU3 224 aa31.12■■■□□ 2.57
CMTM3-201ENST00000361909 WIZO95785 1651 aa31.11■■■□□ 2.57
CMTM3-201ENST00000361909 PCGF6Q9BYE7 350 aa30.95■■■□□ 2.54
CMTM3-201ENST00000361909 PEG3Q9GZU2 1588 aa30.94■■■□□ 2.54
CMTM3-201ENST00000361909 TOP2AP11388 1531 aaKnown RBP30.84■■■□□ 2.53
CMTM3-201ENST00000361909 EIF4G1Q04637 1599 aaKnown RBP30.78■■■□□ 2.52
CMTM3-201ENST00000361909 SMARCA2P51531 1590 aa30.76■■■□□ 2.51
CMTM3-201ENST00000361909 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
CMTM3-201ENST00000361909 PELP1Q8IZL8 1130 aaKnown RBP30.74■■■□□ 2.51
CMTM3-201ENST00000361909 PPARGC1BQ86YN6 1023 aaKnown RBP30.65■■■□□ 2.5
CMTM3-201ENST00000361909 BAZ1BQ9UIG0 1483 aaKnown RBP30.56■■■□□ 2.48
CMTM3-201ENST00000361909 NCAPD3P42695 1498 aa30.52■■■□□ 2.48
CMTM3-201ENST00000361909 CCDC88BA6NC98 1476 aa30.5■■■□□ 2.47
CMTM3-201ENST00000361909 HMGXB3Q12766 1538 aa30.47■■■□□ 2.47
CMTM3-201ENST00000361909 TRIM26Q12899 539 aaPredicted RBP30.39■■■□□ 2.46
CMTM3-201ENST00000361909 ZEB1P37275 1124 aaPredicted RBP30.32■■■□□ 2.44
CMTM3-201ENST00000361909 CC2D2AQ9P2K1 1620 aa30.32■■■□□ 2.44
CMTM3-201ENST00000361909 LOC105371045A0A1W2PR82 267 aa30.01■■■□□ 2.4
CMTM3-201ENST00000361909 TRIM41Q8WV44 630 aa29.98■■■□□ 2.39
CMTM3-201ENST00000361909 CFTRP13569 1480 aa29.83■■■□□ 2.37
CMTM3-201ENST00000361909 ABCC8Q09428 1581 aa29.8■■■□□ 2.36
CMTM3-201ENST00000361909 SCAF1Q9H7N4 1312 aaKnown RBP29.74■■■□□ 2.35
CMTM3-201ENST00000361909 CADPSQ9ULU8 1353 aa29.72■■■□□ 2.35
CMTM3-201ENST00000361909 PRDM2Q13029 1718 aa29.69■■■□□ 2.34
CMTM3-201ENST00000361909 WRNQ14191 1432 aaPredicted RBP eCLIP29.69■■■□□ 2.34
CMTM3-201ENST00000361909 MYT1Q01538 1121 aa29.64■■■□□ 2.34
CMTM3-201ENST00000361909 SYNJ1O43426 1573 aa29.52■■■□□ 2.32
CMTM3-201ENST00000361909 LAMC3Q9Y6N6 1575 aa29.48■■■□□ 2.31
CMTM3-201ENST00000361909 DNAJC5BQ9UF47 199 aa29.47■■■□□ 2.31
CMTM3-201ENST00000361909 TOP2BQ02880 1626 aa29.46■■■□□ 2.31
CMTM3-201ENST00000361909 BIVM-ERCC5R4GMW8 1640 aa29.44■■■□□ 2.3
CMTM3-201ENST00000361909 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
CMTM3-201ENST00000361909 NESP48681 1621 aa29.35■■■□□ 2.29
CMTM3-201ENST00000361909 CUX1P39880 1505 aa29.34■■■□□ 2.29
CMTM3-201ENST00000361909 EEA1Q15075 1411 aa29.34■■■□□ 2.29
CMTM3-201ENST00000361909 FAM9AQ8IZU1 332 aaPredicted RBP29.33■■■□□ 2.29
CMTM3-201ENST00000361909 ACIN1Q9UKV3 1341 aaKnown RBP29.28■■■□□ 2.28
CMTM3-201ENST00000361909 SOGA1O94964 1423 aa29.27■■■□□ 2.28
CMTM3-201ENST00000361909 PDS5BQ9NTI5 1447 aa29.24■■■□□ 2.27
CMTM3-201ENST00000361909 CEP164Q9UPV0 1460 aa29.18■■■□□ 2.26
CMTM3-201ENST00000361909 RUSC2Q8N2Y8 1516 aa29.14■■■□□ 2.25
CMTM3-201ENST00000361909 CSRNP3Q8WYN3 585 aa29.12■■■□□ 2.25
CMTM3-201ENST00000361909 DNMBPQ6XZF7 1577 aa29.11■■■□□ 2.25
CMTM3-201ENST00000361909 CENPBP07199 599 aaPredicted RBP29.1■■■□□ 2.25
CMTM3-201ENST00000361909 TOPBP1Q92547 1522 aa29.04■■■□□ 2.24
CMTM3-201ENST00000361909 KIF21AQ7Z4S6 1674 aa29.04■■■□□ 2.24
CMTM3-201ENST00000361909 FGD5Q6ZNL6 1462 aa29.02■■■□□ 2.24
CMTM3-201ENST00000361909 NEUROD1Q13562 356 aa29.01■■■□□ 2.23
CMTM3-201ENST00000361909 URB2Q14146 1524 aaKnown RBP28.97■■■□□ 2.23
CMTM3-201ENST00000361909 KIF27Q86VH2 1401 aa28.96■■■□□ 2.23
CMTM3-201ENST00000361909 KIF21BO75037 1637 aa28.91■■■□□ 2.22
CMTM3-201ENST00000361909 POLA1P09884 1462 aaPredicted RBP28.89■■■□□ 2.22
CMTM3-201ENST00000361909 GOLGA3Q08378 1498 aa28.86■■■□□ 2.21
CMTM3-201ENST00000361909 CCER1Q8TC90 406 aaPredicted RBP28.86■■■□□ 2.21
CMTM3-201ENST00000361909 GTF3C3Q9Y5Q9 886 aa28.85■■■□□ 2.21
CMTM3-201ENST00000361909 DIEXFQ68CQ4 756 aaKnown RBP28.84■■■□□ 2.21
CMTM3-201ENST00000361909 MRC2Q9UBG0 1479 aa28.84■■■□□ 2.21
CMTM3-201ENST00000361909 EHMT2Q96KQ7 1210 aa28.83■■■□□ 2.21
CMTM3-201ENST00000361909 CUX2O14529 1486 aa28.83■■■□□ 2.21
CMTM3-201ENST00000361909 ABCA10Q8WWZ4 1543 aa28.82■■■□□ 2.2
CMTM3-201ENST00000361909 TNIKQ9UKE5 1360 aa28.8■■■□□ 2.2
CMTM3-201ENST00000361909 PRXQ9BXM0 1461 aa28.77■■■□□ 2.2
CMTM3-201ENST00000361909 RAD54L2Q9Y4B4 1467 aa28.76■■■□□ 2.19
CMTM3-201ENST00000361909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.74■■■□□ 2.19
CMTM3-201ENST00000361909 ERICH3Q5RHP9 1530 aa28.74■■■□□ 2.19
CMTM3-201ENST00000361909 WDR97A6NE52 1622 aa28.7■■■□□ 2.19
CMTM3-201ENST00000361909 WDR62O43379 1518 aa28.7■■■□□ 2.19
CMTM3-201ENST00000361909 ERCC6Q03468 1493 aa28.7■■■□□ 2.19
CMTM3-201ENST00000361909 UBTFP17480 764 aaKnown RBP28.69■■■□□ 2.18
CMTM3-201ENST00000361909 IGF1RP08069 1367 aa28.69■■■□□ 2.18
CMTM3-201ENST00000361909 RAPGEF2Q9Y4G8 1499 aa28.69■■■□□ 2.18
CMTM3-201ENST00000361909 TARBP1Q13395 1621 aaKnown RBP28.62■■■□□ 2.17
CMTM3-201ENST00000361909 CEP162Q5TB80 1403 aa28.59■■■□□ 2.17
CMTM3-201ENST00000361909 THOC2Q8NI27 1593 aaKnown RBP28.58■■■□□ 2.17
CMTM3-201ENST00000361909 ABCA5Q8WWZ7 1642 aa28.56■■■□□ 2.16
CMTM3-201ENST00000361909 CARMIL1Q5VZK9 1371 aa28.54■■■□□ 2.16
CMTM3-201ENST00000361909 IFT140Q96RY7 1462 aa28.51■■■□□ 2.15
CMTM3-201ENST00000361909 GAPVD1Q14C86 1478 aa28.5■■■□□ 2.15
CMTM3-201ENST00000361909 CUL7Q14999 1698 aa28.5■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms