RNA–Protein interactions for RNA: ENST00000588965.5

FARSA-208, Transcript of phenylalanyl-tRNA synthetase subunit alpha, human

TSL 5

Gene FARSA, Length 1,831 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FARSA-208	ENST00000588965	NISCH	Q9Y2I1	1504 aa		45.2	■■■■■ 4.83
FARSA-208	ENST00000588965	CCDC180	Q9P1Z9	1646 aa		39.47	■■■■□ 3.91
FARSA-208	ENST00000588965	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.91	■■■■□ 3.66
FARSA-208	ENST00000588965	ABCC9	O60706	1549 aa		37.66	■■■■□ 3.62
FARSA-208	ENST00000588965	DCAF8L2	P0C7V8	631 aa		37.57	■■■■□ 3.61
FARSA-208	ENST00000588965	DCAF1	Q9Y4B6	1507 aa		37.32	■■■■□ 3.57
FARSA-208	ENST00000588965	MYO15B	Q96JP2	1530 aa		36.97	■■■■□ 3.51
FARSA-208	ENST00000588965	NACAD	O15069	1562 aa		36.86	■■■■□ 3.49
FARSA-208	ENST00000588965	SHROOM4	Q9ULL8	1493 aa		36.83	■■■■□ 3.49
FARSA-208	ENST00000588965	RB1CC1	Q8TDY2	1594 aa		36.62	■■■■□ 3.45
FARSA-208	ENST00000588965	SCRIB	Q14160	1630 aa		36.35	■■■■□ 3.41
FARSA-208	ENST00000588965	UNC13A	Q9UPW8	1703 aa		35.8	■■■■□ 3.32
FARSA-208	ENST00000588965	PABPN1	Q86U42	306 aa	Known RBP eCLIP	35.5	■■■■□ 3.27
FARSA-208	ENST00000588965	BICRA	Q9NZM4	1560 aa		35.49	■■■■□ 3.27
FARSA-208	ENST00000588965	SUPT5H	O00267	1087 aa	Known RBP	35.33	■■■■□ 3.25
FARSA-208	ENST00000588965	CECR2	Q9BXF3	1484 aa		35.17	■■■■□ 3.22
FARSA-208	ENST00000588965	RSF1	Q96T23	1441 aa	Predicted RBP	34.99	■■■■□ 3.19
FARSA-208	ENST00000588965	MROH2B	Q7Z745	1585 aa		34.93	■■■■□ 3.18
FARSA-208	ENST00000588965	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.93	■■■■□ 3.18
FARSA-208	ENST00000588965	SMARCA4	P51532	1647 aa		34.79	■■■■□ 3.16
FARSA-208	ENST00000588965	WIZ	O95785	1651 aa		34.63	■■■■□ 3.13
FARSA-208	ENST00000588965	EIF4G1	Q04637	1599 aa	Known RBP	34.47	■■■■□ 3.11
FARSA-208	ENST00000588965	PEG3	Q9GZU2	1588 aa		34.34	■■■■□ 3.09
FARSA-208	ENST00000588965	ATAD2B	Q9ULI0	1458 aa		34.3	■■■■□ 3.08
FARSA-208	ENST00000588965	SMARCA2	P51531	1590 aa		34.26	■■■■□ 3.08
FARSA-208	ENST00000588965	TOP2A	P11388	1531 aa	Known RBP	34.25	■■■■□ 3.07
FARSA-208	ENST00000588965	BAZ1B	Q9UIG0	1483 aa	Known RBP	34.11	■■■■□ 3.05
FARSA-208	ENST00000588965	NCAPD3	P42695	1498 aa		34.03	■■■■□ 3.04
FARSA-208	ENST00000588965	CC2D2A	Q9P2K1	1620 aa		34.02	■■■■□ 3.04
FARSA-208	ENST00000588965	HMGXB3	Q12766	1538 aa		33.95	■■■■□ 3.03
FARSA-208	ENST00000588965	CCDC88B	A6NC98	1476 aa		33.93	■■■■□ 3.02
FARSA-208	ENST00000588965	CHIC1	Q5VXU3	224 aa		33.63	■■■□□ 2.97
FARSA-208	ENST00000588965	DNAJC5B	Q9UF47	199 aa		33.42	■■■□□ 2.94
FARSA-208	ENST00000588965	CFTR	P13569	1480 aa		33.21	■■■□□ 2.91
FARSA-208	ENST00000588965	TRIM41	Q8WV44	630 aa		33.21	■■■□□ 2.91
FARSA-208	ENST00000588965	CADPS	Q9ULU8	1353 aa		33.17	■■■□□ 2.9
FARSA-208	ENST00000588965	ABCC8	Q09428	1581 aa		33.15	■■■□□ 2.9
FARSA-208	ENST00000588965	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.97	■■■□□ 2.87
FARSA-208	ENST00000588965	NES	P48681	1621 aa		32.97	■■■□□ 2.87
FARSA-208	ENST00000588965	PRDM2	Q13029	1718 aa		32.96	■■■□□ 2.87
FARSA-208	ENST00000588965	LAMC3	Q9Y6N6	1575 aa		32.9	■■■□□ 2.86
FARSA-208	ENST00000588965	SYNJ1	O43426	1573 aa		32.81	■■■□□ 2.84
FARSA-208	ENST00000588965	FANCD2	Q9BXW9	1451 aa		32.81	■■■□□ 2.84
FARSA-208	ENST00000588965	PDS5B	Q9NTI5	1447 aa		32.7	■■■□□ 2.83
FARSA-208	ENST00000588965	TOP2B	Q02880	1626 aa		32.68	■■■□□ 2.82
FARSA-208	ENST00000588965	CUX1	P39880	1505 aa		32.67	■■■□□ 2.82
FARSA-208	ENST00000588965	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.64	■■■□□ 2.82
FARSA-208	ENST00000588965	BIVM-ERCC5	R4GMW8	1640 aa		32.63	■■■□□ 2.81
FARSA-208	ENST00000588965	CEP164	Q9UPV0	1460 aa		32.63	■■■□□ 2.81
FARSA-208	ENST00000588965	KIF21A	Q7Z4S6	1674 aa		32.52	■■■□□ 2.8
FARSA-208	ENST00000588965	SOGA1	O94964	1423 aa		32.49	■■■□□ 2.79
FARSA-208	ENST00000588965	DNMBP	Q6XZF7	1577 aa		32.45	■■■□□ 2.78
FARSA-208	ENST00000588965	TOPBP1	Q92547	1522 aa		32.41	■■■□□ 2.78
FARSA-208	ENST00000588965	URB2	Q14146	1524 aa	Known RBP	32.4	■■■□□ 2.78
FARSA-208	ENST00000588965	RUSC2	Q8N2Y8	1516 aa		32.37	■■■□□ 2.77
FARSA-208	ENST00000588965	FGD5	Q6ZNL6	1462 aa		32.37	■■■□□ 2.77
FARSA-208	ENST00000588965	LOC105371045	A0A1W2PR82	267 aa		32.37	■■■□□ 2.77
FARSA-208	ENST00000588965	EEA1	Q15075	1411 aa		32.34	■■■□□ 2.77
FARSA-208	ENST00000588965	ERCC6	Q03468	1493 aa		32.33	■■■□□ 2.77
FARSA-208	ENST00000588965	MRC2	Q9UBG0	1479 aa		32.28	■■■□□ 2.76
FARSA-208	ENST00000588965	POLA1	P09884	1462 aa	Predicted RBP	32.24	■■■□□ 2.75
FARSA-208	ENST00000588965	CSRNP3	Q8WYN3	585 aa		32.24	■■■□□ 2.75
FARSA-208	ENST00000588965	EHMT2	Q96KQ7	1210 aa		32.23	■■■□□ 2.75
FARSA-208	ENST00000588965	KIF27	Q86VH2	1401 aa		32.16	■■■□□ 2.74
FARSA-208	ENST00000588965	RAD54L2	Q9Y4B4	1467 aa		32.16	■■■□□ 2.74
FARSA-208	ENST00000588965	CUX2	O14529	1486 aa		32.14	■■■□□ 2.74
FARSA-208	ENST00000588965	WDR62	O43379	1518 aa		32.09	■■■□□ 2.73
FARSA-208	ENST00000588965	ABCA10	Q8WWZ4	1543 aa		32.05	■■■□□ 2.72
FARSA-208	ENST00000588965	THOC2	Q8NI27	1593 aa	Known RBP	32.04	■■■□□ 2.72
FARSA-208	ENST00000588965	WDR97	A6NE52	1622 aa		31.92	■■■□□ 2.7
FARSA-208	ENST00000588965	TARBP1	Q13395	1621 aa	Known RBP	31.92	■■■□□ 2.7
FARSA-208	ENST00000588965	KIF21B	O75037	1637 aa		31.91	■■■□□ 2.7
FARSA-208	ENST00000588965	GOLGA3	Q08378	1498 aa		31.91	■■■□□ 2.7
FARSA-208	ENST00000588965	TDRD9	Q8NDG6	1382 aa	Known RBP	31.89	■■■□□ 2.7
FARSA-208	ENST00000588965	IGF1R	P08069	1367 aa		31.89	■■■□□ 2.69
FARSA-208	ENST00000588965	UBTF	P17480	764 aa	Known RBP	31.86	■■■□□ 2.69
FARSA-208	ENST00000588965	IFT140	Q96RY7	1462 aa		31.85	■■■□□ 2.69
FARSA-208	ENST00000588965	PRX	Q9BXM0	1461 aa		31.84	■■■□□ 2.69
FARSA-208	ENST00000588965	RAPGEF2	Q9Y4G8	1499 aa		31.83	■■■□□ 2.69
FARSA-208	ENST00000588965	GAPVD1	Q14C86	1478 aa		31.8	■■■□□ 2.68
FARSA-208	ENST00000588965	ABCA5	Q8WWZ7	1642 aa		31.79	■■■□□ 2.68
FARSA-208	ENST00000588965	TNIK	Q9UKE5	1360 aa		31.76	■■■□□ 2.67
FARSA-208	ENST00000588965	ERICH3	Q5RHP9	1530 aa		31.75	■■■□□ 2.67
FARSA-208	ENST00000588965	CARMIL1	Q5VZK9	1371 aa		31.74	■■■□□ 2.67
FARSA-208	ENST00000588965	AQR	O60306	1485 aa	Known RBP eCLIP	31.72	■■■□□ 2.67	4e-7	■■■■□ 21.2
FARSA-208	ENST00000588965	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.7	■■■□□ 2.67
FARSA-208	ENST00000588965	CUL7	Q14999	1698 aa		31.63	■■■□□ 2.65
FARSA-208	ENST00000588965	CEP162	Q5TB80	1403 aa		31.59	■■■□□ 2.65
FARSA-208	ENST00000588965	GRIN2B	Q13224	1484 aa		31.58	■■■□□ 2.65
FARSA-208	ENST00000588965	PBRM1	Q86U86	1689 aa		31.58	■■■□□ 2.65
FARSA-208	ENST00000588965	EIF4G3	O43432	1585 aa	Known RBP	31.56	■■■□□ 2.64
FARSA-208	ENST00000588965	RANGAP1	P46060	587 aa	Predicted RBP	31.47	■■■□□ 2.63
FARSA-208	ENST00000588965	FHAD1	B1AJZ9	1412 aa		31.44	■■■□□ 2.62
FARSA-208	ENST00000588965	ADAMTS12	P58397	1594 aa		31.41	■■■□□ 2.62
FARSA-208	ENST00000588965	CLIP1	P30622	1438 aa		31.41	■■■□□ 2.62
FARSA-208	ENST00000588965	SNAPC4	Q5SXM2	1469 aa		31.41	■■■□□ 2.62
FARSA-208	ENST00000588965	MAGI1	Q96QZ7	1491 aa	Predicted RBP	31.32	■■■□□ 2.6
FARSA-208	ENST00000588965	CTTNBP2	Q8WZ74	1663 aa		31.23	■■■□□ 2.59
FARSA-208	ENST00000588965	CHMP7	Q8WUX9	453 aa	Predicted RBP	31.21	■■■□□ 2.59
FARSA-208	ENST00000588965	SYNJ2	O15056	1496 aa		31.21	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms