RNA–Protein interactions for RNA: ENST00000563130.5

CNOT1-204, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 2

Gene CNOT1, Length 2,280 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-204ENST00000563130 AEBP2Q6ZN18 517 aaPredicted RBP16.84■□□□□ 0.29
CNOT1-204ENST00000563130 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
CNOT1-204ENST00000563130 NISCHQ9Y2I1 1504 aa15.02■□□□□ -0
CNOT1-204ENST00000563130 PHF23Q9BUL5 403 aaPredicted RBP14.42□□□□□ -0.1
CNOT1-204ENST00000563130 SENP3Q9H4L4 574 aaPredicted RBP14.37□□□□□ -0.11
CNOT1-204ENST00000563130 PLPPR3Q6T4P5 718 aa13.36□□□□□ -0.27
CNOT1-204ENST00000563130 CCDC180Q9P1Z9 1646 aa13.32□□□□□ -0.28
CNOT1-204ENST00000563130 FOXD1Q16676 465 aa13.3□□□□□ -0.28
CNOT1-204ENST00000563130 ABCC9O60706 1549 aa12.98□□□□□ -0.33
CNOT1-204ENST00000563130 ADRA2BP18089 450 aa12.74□□□□□ -0.37
CNOT1-204ENST00000563130 PPP6R1Q9UPN7 881 aa12.73□□□□□ -0.37
CNOT1-204ENST00000563130 PIAS4Q8N2W9 510 aaPredicted RBP12.54□□□□□ -0.4
CNOT1-204ENST00000563130 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
CNOT1-204ENST00000563130 NACADO15069 1562 aa12.52□□□□□ -0.4
CNOT1-204ENST00000563130 RB1CC1Q8TDY2 1594 aa12.51□□□□□ -0.41
CNOT1-204ENST00000563130 MYO15BQ96JP2 1530 aa12.5□□□□□ -0.41
CNOT1-204ENST00000563130 DCAF8L2P0C7V8 631 aa12.47□□□□□ -0.41
CNOT1-204ENST00000563130 DCAF1Q9Y4B6 1507 aa12.45□□□□□ -0.42
CNOT1-204ENST00000563130 MSH5O43196 834 aa12.34□□□□□ -0.43
CNOT1-204ENST00000563130 UNC13AQ9UPW8 1703 aa12.22□□□□□ -0.45
CNOT1-204ENST00000563130 BICRAQ9NZM4 1560 aa12.16□□□□□ -0.46
CNOT1-204ENST00000563130 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.473e-7■□□□□ 8.9
CNOT1-204ENST00000563130 SCRIBQ14160 1630 aa12.13□□□□□ -0.47
CNOT1-204ENST00000563130 SHROOM4Q9ULL8 1493 aa12.04□□□□□ -0.48
CNOT1-204ENST00000563130 DNAJC5BQ9UF47 199 aa11.91□□□□□ -0.5
CNOT1-204ENST00000563130 EIF4G1Q04637 1599 aaKnown RBP11.82□□□□□ -0.52
CNOT1-204ENST00000563130 PPP4R3CPQ6ZMV5 832 aa11.75□□□□□ -0.53
CNOT1-204ENST00000563130 CC2D2AQ9P2K1 1620 aa11.75□□□□□ -0.53
CNOT1-204ENST00000563130 SCAF1Q9H7N4 1312 aaKnown RBP11.74□□□□□ -0.53
CNOT1-204ENST00000563130 CECR2Q9BXF3 1484 aa11.7□□□□□ -0.54
CNOT1-204ENST00000563130 BAZ1AQ9NRL2 1556 aaPredicted RBP11.63□□□□□ -0.55
CNOT1-204ENST00000563130 SMARCA4P51532 1647 aa11.63□□□□□ -0.55
CNOT1-204ENST00000563130 NCAPD3P42695 1498 aa11.58□□□□□ -0.56
CNOT1-204ENST00000563130 ATAD2BQ9ULI0 1458 aa11.58□□□□□ -0.56
CNOT1-204ENST00000563130 MROH2BQ7Z745 1585 aa11.57□□□□□ -0.56
CNOT1-204ENST00000563130 MAPK8IP2Q13387 824 aaPredicted RBP11.56□□□□□ -0.56
CNOT1-204ENST00000563130 PEG3Q9GZU2 1588 aa11.55□□□□□ -0.56
CNOT1-204ENST00000563130 SMARCA2P51531 1590 aa11.55□□□□□ -0.56
CNOT1-204ENST00000563130 HMGXB3Q12766 1538 aa11.51□□□□□ -0.57
CNOT1-204ENST00000563130 NCBP3Q53F19 620 aaKnown RBP11.48□□□□□ -0.57
CNOT1-204ENST00000563130 RSF1Q96T23 1441 aaPredicted RBP11.47□□□□□ -0.57
CNOT1-204ENST00000563130 BAZ1BQ9UIG0 1483 aaKnown RBP11.46□□□□□ -0.58
CNOT1-204ENST00000563130 DMRT2Q9Y5R5 561 aa11.45□□□□□ -0.58
CNOT1-204ENST00000563130 CNKSR2Q8WXI2 1034 aa11.44□□□□□ -0.58
CNOT1-204ENST00000563130 WIZO95785 1651 aa11.43□□□□□ -0.58
CNOT1-204ENST00000563130 KCNA4P22459 653 aa11.4□□□□□ -0.58
CNOT1-204ENST00000563130 TOP2AP11388 1531 aaKnown RBP11.33□□□□□ -0.6
CNOT1-204ENST00000563130 POTEDQ86YR6 584 aa11.26□□□□□ -0.61
CNOT1-204ENST00000563130 NESP48681 1621 aa11.25□□□□□ -0.61
CNOT1-204ENST00000563130 NPM3O75607 178 aaKnown RBP11.25□□□□□ -0.61
CNOT1-204ENST00000563130 LAMC3Q9Y6N6 1575 aa11.24□□□□□ -0.61
CNOT1-204ENST00000563130 RNF216Q9NWF9 866 aaPredicted RBP11.23□□□□□ -0.61
CNOT1-204ENST00000563130 CADPSQ9ULU8 1353 aa11.23□□□□□ -0.61
CNOT1-204ENST00000563130 CCDC88BA6NC98 1476 aa11.2□□□□□ -0.62
CNOT1-204ENST00000563130 HOXD11P31277 338 aaPredicted RBP11.19□□□□□ -0.62
CNOT1-204ENST00000563130 CFTRP13569 1480 aa11.18□□□□□ -0.62
CNOT1-204ENST00000563130 ERCC6Q03468 1493 aa11.16□□□□□ -0.62
CNOT1-204ENST00000563130 SUPT5HO00267 1087 aaKnown RBP11.16□□□□□ -0.62
CNOT1-204ENST00000563130 PDS5BQ9NTI5 1447 aa11.16□□□□□ -0.62
CNOT1-204ENST00000563130 KIF21AQ7Z4S6 1674 aa11.1□□□□□ -0.63
CNOT1-204ENST00000563130 FANCD2Q9BXW9 1451 aa11.08□□□□□ -0.64
CNOT1-204ENST00000563130 THOC2Q8NI27 1593 aaKnown RBP11.08□□□□□ -0.64
CNOT1-204ENST00000563130 CUX2O14529 1486 aa11.06□□□□□ -0.64
CNOT1-204ENST00000563130 CEP164Q9UPV0 1460 aa11.06□□□□□ -0.64
CNOT1-204ENST00000563130 PRDM2Q13029 1718 aa11.04□□□□□ -0.64
CNOT1-204ENST00000563130 MRC2Q9UBG0 1479 aa11.04□□□□□ -0.64
CNOT1-204ENST00000563130 WDR62O43379 1518 aa11.02□□□□□ -0.65
CNOT1-204ENST00000563130 URB2Q14146 1524 aaKnown RBP10.98□□□□□ -0.65
CNOT1-204ENST00000563130 DCAF8L1A6NGE4 600 aa10.96□□□□□ -0.66
CNOT1-204ENST00000563130 TOPBP1Q92547 1522 aa10.92□□□□□ -0.66
CNOT1-204ENST00000563130 ABCC8Q09428 1581 aa10.92□□□□□ -0.66
CNOT1-204ENST00000563130 DNMBPQ6XZF7 1577 aa10.9□□□□□ -0.66
CNOT1-204ENST00000563130 SLC4A1APQ9BWU0 796 aaKnown RBP10.88□□□□□ -0.67
CNOT1-204ENST00000563130 CUX1P39880 1505 aa10.85□□□□□ -0.67
CNOT1-204ENST00000563130 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.68
CNOT1-204ENST00000563130 IFT140Q96RY7 1462 aa10.83□□□□□ -0.68
CNOT1-204ENST00000563130 FGD5Q6ZNL6 1462 aa10.8□□□□□ -0.68
CNOT1-204ENST00000563130 WRNQ14191 1432 aaPredicted RBP eCLIP10.8□□□□□ -0.68
CNOT1-204ENST00000563130 TARBP1Q13395 1621 aaKnown RBP10.8□□□□□ -0.68
CNOT1-204ENST00000563130 ZNF608Q9ULD9 1512 aaPredicted RBP10.79□□□□□ -0.68
CNOT1-204ENST00000563130 SOGA1O94964 1423 aa10.78□□□□□ -0.68
CNOT1-204ENST00000563130 RAD54L2Q9Y4B4 1467 aa10.77□□□□□ -0.68
CNOT1-204ENST00000563130 TOP2BQ02880 1626 aa10.77□□□□□ -0.69
CNOT1-204ENST00000563130 SYNJ1O43426 1573 aa10.76□□□□□ -0.69
CNOT1-204ENST00000563130 BIVM-ERCC5R4GMW8 1640 aa10.76□□□□□ -0.69
CNOT1-204ENST00000563130 EIF4G3O43432 1585 aaKnown RBP10.73□□□□□ -0.69
CNOT1-204ENST00000563130 AQRO60306 1485 aaKnown RBP eCLIP10.73□□□□□ -0.697e-7■■■■□ 19.9
CNOT1-204ENST00000563130 ABCA10Q8WWZ4 1543 aa10.72□□□□□ -0.69
CNOT1-204ENST00000563130 WDR97A6NE52 1622 aa10.71□□□□□ -0.69
CNOT1-204ENST00000563130 TDRD9Q8NDG6 1382 aaKnown RBP10.71□□□□□ -0.69
CNOT1-204ENST00000563130 DNAJC5Q9H3Z4 198 aa10.69□□□□□ -0.7
CNOT1-204ENST00000563130 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.68□□□□□ -0.7
CNOT1-204ENST00000563130 ABCA5Q8WWZ7 1642 aa10.65□□□□□ -0.7
CNOT1-204ENST00000563130 GAPVD1Q14C86 1478 aa10.65□□□□□ -0.7
CNOT1-204ENST00000563130 GRIN2BQ13224 1484 aa10.65□□□□□ -0.7
CNOT1-204ENST00000563130 SNAPC4Q5SXM2 1469 aa10.62□□□□□ -0.71
CNOT1-204ENST00000563130 MAGI1Q96QZ7 1491 aaPredicted RBP10.62□□□□□ -0.71
CNOT1-204ENST00000563130 SLC4A2P04920 1241 aa10.61□□□□□ -0.71
CNOT1-204ENST00000563130 OSCARQ8IYS5 282 aa10.61□□□□□ -0.71
CNOT1-204ENST00000563130 PBRM1Q86U86 1689 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms