RNA–Protein interactions for RNA: ENST00000397276.6

PABPN1-202, Transcript of poly(A) binding protein nuclear 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PABPN1, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPN1-202ENST00000397276 NISCHQ9Y2I1 1504 aa50.15■■■■■ 5.62
PABPN1-202ENST00000397276 SHROOM4Q9ULL8 1493 aa42.71■■■■■ 4.43
PABPN1-202ENST00000397276 CCDC180Q9P1Z9 1646 aa42.69■■■■■ 4.42
PABPN1-202ENST00000397276 ZCCHC6Q5VYS8 1495 aaKnown RBP42.3■■■■■ 4.36
PABPN1-202ENST00000397276 DCAF8L2P0C7V8 631 aa42.07■■■■■ 4.33
PABPN1-202ENST00000397276 SUPT5HO00267 1087 aaKnown RBP41.71■■■■■ 4.27
PABPN1-202ENST00000397276 DCAF1Q9Y4B6 1507 aa41.03■■■■■ 4.16
PABPN1-202ENST00000397276 CHIC1Q5VXU3 224 aa40.23■■■■■ 4.03
PABPN1-202ENST00000397276 ABCC9O60706 1549 aa40.18■■■■■ 4.02
PABPN1-202ENST00000397276 SCRIBQ14160 1630 aa40.14■■■■■ 4.02
PABPN1-202ENST00000397276 MYO15BQ96JP2 1530 aa39.98■■■■□ 3.99
PABPN1-202ENST00000397276 NACADO15069 1562 aa39.65■■■■□ 3.94
PABPN1-202ENST00000397276 RSF1Q96T23 1441 aaPredicted RBP39.58■■■■□ 3.93
PABPN1-202ENST00000397276 CECR2Q9BXF3 1484 aa39.24■■■■□ 3.87
PABPN1-202ENST00000397276 LOC105371045A0A1W2PR82 267 aa39.13■■■■□ 3.85
PABPN1-202ENST00000397276 RB1CC1Q8TDY2 1594 aa39.12■■■■□ 3.85
PABPN1-202ENST00000397276 MROH2BQ7Z745 1585 aa39.01■■■■□ 3.84
PABPN1-202ENST00000397276 TRIM41Q8WV44 630 aa38.83■■■■□ 3.81
PABPN1-202ENST00000397276 WIZO95785 1651 aa38.77■■■■□ 3.8
PABPN1-202ENST00000397276 HRCP23327 699 aa38.69■■■■□ 3.78
PABPN1-202ENST00000397276 PCGF6Q9BYE7 350 aa38.65■■■■□ 3.78
PABPN1-202ENST00000397276 FAM9AQ8IZU1 332 aaPredicted RBP38.6■■■■□ 3.77
PABPN1-202ENST00000397276 BAZ1AQ9NRL2 1556 aaPredicted RBP38.53■■■■□ 3.76
PABPN1-202ENST00000397276 UNC13AQ9UPW8 1703 aa38.46■■■■□ 3.75
PABPN1-202ENST00000397276 PABPN1Q86U42 306 aaKnown RBP eCLIP38.46■■■■□ 3.757e-24■■■■□ 20
PABPN1-202ENST00000397276 EHMT2Q96KQ7 1210 aa38.37■■■■□ 3.73
PABPN1-202ENST00000397276 SMARCA4P51532 1647 aa38.25■■■■□ 3.71
PABPN1-202ENST00000397276 PPARGC1BQ86YN6 1023 aaKnown RBP38.16■■■■□ 3.7
PABPN1-202ENST00000397276 TOP2AP11388 1531 aaKnown RBP38.09■■■■□ 3.69
PABPN1-202ENST00000397276 BICRAQ9NZM4 1560 aa38.07■■■■□ 3.68
PABPN1-202ENST00000397276 CCDC88BA6NC98 1476 aa38.02■■■■□ 3.68
PABPN1-202ENST00000397276 EIF4G1Q04637 1599 aaKnown RBP37.91■■■■□ 3.66
PABPN1-202ENST00000397276 TRIM26Q12899 539 aaPredicted RBP37.91■■■■□ 3.66
PABPN1-202ENST00000397276 SMARCA2P51531 1590 aa37.89■■■■□ 3.66
PABPN1-202ENST00000397276 ABCC8Q09428 1581 aa37.8■■■■□ 3.64
PABPN1-202ENST00000397276 PEG3Q9GZU2 1588 aa37.46■■■■□ 3.59
PABPN1-202ENST00000397276 ATAD2BQ9ULI0 1458 aa37.44■■■■□ 3.58
PABPN1-202ENST00000397276 SOGA1O94964 1423 aa37.41■■■■□ 3.58
PABPN1-202ENST00000397276 BAZ1BQ9UIG0 1483 aaKnown RBP37.33■■■■□ 3.57
PABPN1-202ENST00000397276 RUSC2Q8N2Y8 1516 aa37.24■■■■□ 3.55
PABPN1-202ENST00000397276 WRNQ14191 1432 aaPredicted RBP eCLIP37.21■■■■□ 3.55
PABPN1-202ENST00000397276 CSRNP3Q8WYN3 585 aa37.18■■■■□ 3.54
PABPN1-202ENST00000397276 UBTFP17480 764 aaKnown RBP37.1■■■■□ 3.53
PABPN1-202ENST00000397276 EEA1Q15075 1411 aa37■■■■□ 3.51
PABPN1-202ENST00000397276 CEP162Q5TB80 1403 aa36.99■■■■□ 3.51
PABPN1-202ENST00000397276 SYNJ1O43426 1573 aa36.99■■■■□ 3.51
PABPN1-202ENST00000397276 TTBK1Q5TCY1 1321 aaPredicted RBP36.99■■■■□ 3.51
PABPN1-202ENST00000397276 TNIKQ9UKE5 1360 aa36.93■■■■□ 3.5
PABPN1-202ENST00000397276 ZEB1P37275 1124 aaPredicted RBP36.81■■■■□ 3.48
PABPN1-202ENST00000397276 GOLGA3Q08378 1498 aa36.79■■■■□ 3.48
PABPN1-202ENST00000397276 NCAPD3P42695 1498 aa36.75■■■■□ 3.47
PABPN1-202ENST00000397276 HMGXB3Q12766 1538 aa36.64■■■■□ 3.46
PABPN1-202ENST00000397276 CEP164Q9UPV0 1460 aa36.62■■■■□ 3.45
PABPN1-202ENST00000397276 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.6■■■■□ 3.45
PABPN1-202ENST00000397276 RANGAP1P46060 587 aaPredicted RBP36.59■■■■□ 3.45
PABPN1-202ENST00000397276 TOP2BQ02880 1626 aa36.53■■■■□ 3.44
PABPN1-202ENST00000397276 RAPGEF2Q9Y4G8 1499 aa36.48■■■■□ 3.43
PABPN1-202ENST00000397276 KIF21BO75037 1637 aa36.48■■■■□ 3.43
PABPN1-202ENST00000397276 CCER1Q8TC90 406 aaPredicted RBP36.45■■■■□ 3.43
PABPN1-202ENST00000397276 CLIP1P30622 1438 aa36.41■■■■□ 3.42
PABPN1-202ENST00000397276 CFTRP13569 1480 aa36.35■■■■□ 3.41
PABPN1-202ENST00000397276 BIVM-ERCC5R4GMW8 1640 aa36.35■■■■□ 3.41
PABPN1-202ENST00000397276 CUX1P39880 1505 aa36.33■■■■□ 3.41
PABPN1-202ENST00000397276 SCAF1Q9H7N4 1312 aaKnown RBP36.32■■■■□ 3.41
PABPN1-202ENST00000397276 VPS8Q8N3P4 1428 aa36.15■■■■□ 3.38
PABPN1-202ENST00000397276 APLP2Q06481 763 aa36.14■■■■□ 3.38
PABPN1-202ENST00000397276 KIF27Q86VH2 1401 aa36.1■■■■□ 3.37
PABPN1-202ENST00000397276 PRXQ9BXM0 1461 aa36.1■■■■□ 3.37
PABPN1-202ENST00000397276 CADPSQ9ULU8 1353 aa36.09■■■■□ 3.37
PABPN1-202ENST00000397276 CC2D2AQ9P2K1 1620 aa36.08■■■■□ 3.37
PABPN1-202ENST00000397276 HNRNPUL2Q1KMD3 747 aaKnown RBP36.03■■■■□ 3.36
PABPN1-202ENST00000397276 PELP1Q8IZL8 1130 aaKnown RBP36.02■■■■□ 3.36
PABPN1-202ENST00000397276 ERICH3Q5RHP9 1530 aa35.98■■■■□ 3.35
PABPN1-202ENST00000397276 CUX2O14529 1486 aa35.88■■■■□ 3.33
PABPN1-202ENST00000397276 PRDM2Q13029 1718 aa35.84■■■■□ 3.33
PABPN1-202ENST00000397276 ARAP1Q96P48 1450 aa35.82■■■■□ 3.32
PABPN1-202ENST00000397276 FGD5Q6ZNL6 1462 aa35.78■■■■□ 3.32
PABPN1-202ENST00000397276 IGF1RP08069 1367 aa35.77■■■■□ 3.32
PABPN1-202ENST00000397276 FANCD2Q9BXW9 1451 aa35.73■■■■□ 3.31
PABPN1-202ENST00000397276 KANK4Q5T7N3 995 aaPredicted RBP35.72■■■■□ 3.31
PABPN1-202ENST00000397276 NESP48681 1621 aa35.67■■■■□ 3.3
PABPN1-202ENST00000397276 CARMIL1Q5VZK9 1371 aa35.63■■■■□ 3.29
PABPN1-202ENST00000397276 ARHGAP35Q9NRY4 1499 aa35.61■■■■□ 3.29
PABPN1-202ENST00000397276 NEUROD1Q13562 356 aa35.59■■■■□ 3.29
PABPN1-202ENST00000397276 ACIN1Q9UKV3 1341 aaKnown RBP35.55■■■■□ 3.28
PABPN1-202ENST00000397276 RAD54L2Q9Y4B4 1467 aa35.53■■■■□ 3.28
PABPN1-202ENST00000397276 DNAJC5BQ9UF47 199 aa35.51■■■■□ 3.27
PABPN1-202ENST00000397276 DIEXFQ68CQ4 756 aaKnown RBP35.44■■■■□ 3.26
PABPN1-202ENST00000397276 P3H3Q8IVL6 736 aa35.42■■■■□ 3.26
PABPN1-202ENST00000397276 TOPBP1Q92547 1522 aa35.42■■■■□ 3.26
PABPN1-202ENST00000397276 DNMBPQ6XZF7 1577 aa35.41■■■■□ 3.26
PABPN1-202ENST00000397276 POLA1P09884 1462 aaPredicted RBP35.4■■■■□ 3.26
PABPN1-202ENST00000397276 ITGAEP38570 1179 aa35.3■■■■□ 3.24
PABPN1-202ENST00000397276 GTF3C3Q9Y5Q9 886 aa35.3■■■■□ 3.24
PABPN1-202ENST00000397276 ATP1B4Q9UN42 357 aaPredicted RBP35.3■■■■□ 3.24
PABPN1-202ENST00000397276 ABCA10Q8WWZ4 1543 aa35.29■■■■□ 3.24
PABPN1-202ENST00000397276 ZNF316A6NFI3 1004 aaPredicted RBP35.27■■■■□ 3.24
PABPN1-202ENST00000397276 URB2Q14146 1524 aaKnown RBP35.21■■■■□ 3.23
PABPN1-202ENST00000397276 RRBP1Q9P2E9 1410 aaKnown RBP35.2■■■■□ 3.23
PABPN1-202ENST00000397276 LAMC3Q9Y6N6 1575 aa35.2■■■■□ 3.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms