RNA–Protein interactions for RNA: ENST00000556809.1

PABPN1-206, Transcript of poly(A) binding protein nuclear 1, humanhuman

TSL 2

Gene PABPN1, Length 969 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPN1-206ENST00000556809 NISCHQ9Y2I1 1504 aa55.04■■■■■ 6.4
PABPN1-206ENST00000556809 CCDC180Q9P1Z9 1646 aa49.03■■■■■ 5.44
PABPN1-206ENST00000556809 ABCC9O60706 1549 aa48.11■■■■■ 5.29
PABPN1-206ENST00000556809 RB1CC1Q8TDY2 1594 aa46.21■■■■■ 4.99
PABPN1-206ENST00000556809 NACADO15069 1562 aa46.13■■■■■ 4.97
PABPN1-206ENST00000556809 DCAF8L2P0C7V8 631 aa45.93■■■■■ 4.94
PABPN1-206ENST00000556809 MYO15BQ96JP2 1530 aa45.82■■■■■ 4.93
PABPN1-206ENST00000556809 ZCCHC6Q5VYS8 1495 aaKnown RBP45.8■■■■■ 4.92
PABPN1-206ENST00000556809 DCAF1Q9Y4B6 1507 aa45.56■■■■■ 4.88
PABPN1-206ENST00000556809 UNC13AQ9UPW8 1703 aa45.25■■■■■ 4.83
PABPN1-206ENST00000556809 PABPN1Q86U42 306 aaKnown RBP eCLIP44.92■■■■■ 4.78
PABPN1-206ENST00000556809 BICRAQ9NZM4 1560 aa44.9■■■■■ 4.78
PABPN1-206ENST00000556809 SCRIBQ14160 1630 aa44.67■■■■■ 4.74
PABPN1-206ENST00000556809 DNAJC5BQ9UF47 199 aa44.42■■■■■ 4.7
PABPN1-206ENST00000556809 SHROOM4Q9ULL8 1493 aa44.35■■■■■ 4.69
PABPN1-206ENST00000556809 EIF4G1Q04637 1599 aaKnown RBP43.68■■■■■ 4.58
PABPN1-206ENST00000556809 CC2D2AQ9P2K1 1620 aa43.55■■■■■ 4.56
PABPN1-206ENST00000556809 CECR2Q9BXF3 1484 aa43.25■■■■■ 4.51
PABPN1-206ENST00000556809 SMARCA4P51532 1647 aa42.75■■■■■ 4.43
PABPN1-206ENST00000556809 BAZ1AQ9NRL2 1556 aaPredicted RBP42.65■■■■■ 4.42
PABPN1-206ENST00000556809 NCAPD3P42695 1498 aa42.59■■■■■ 4.41
PABPN1-206ENST00000556809 ATAD2BQ9ULI0 1458 aa42.56■■■■■ 4.4
PABPN1-206ENST00000556809 SMARCA2P51531 1590 aa42.48■■■■■ 4.39
PABPN1-206ENST00000556809 MROH2BQ7Z745 1585 aa42.42■■■■■ 4.38
PABPN1-206ENST00000556809 PEG3Q9GZU2 1588 aa42.38■■■■■ 4.37
PABPN1-206ENST00000556809 HMGXB3Q12766 1538 aa42.35■■■■■ 4.37
PABPN1-206ENST00000556809 BAZ1BQ9UIG0 1483 aaKnown RBP42.16■■■■■ 4.34
PABPN1-206ENST00000556809 WIZO95785 1651 aa41.96■■■■■ 4.31
PABPN1-206ENST00000556809 RSF1Q96T23 1441 aaPredicted RBP41.86■■■■■ 4.29
PABPN1-206ENST00000556809 NESP48681 1621 aa41.61■■■■■ 4.25
PABPN1-206ENST00000556809 LAMC3Q9Y6N6 1575 aa41.47■■■■■ 4.23
PABPN1-206ENST00000556809 TOP2AP11388 1531 aaKnown RBP41.47■■■■■ 4.23
PABPN1-206ENST00000556809 ERCC6Q03468 1493 aa41.43■■■■■ 4.22
PABPN1-206ENST00000556809 CADPSQ9ULU8 1353 aa41.3■■■■■ 4.2
PABPN1-206ENST00000556809 PDS5BQ9NTI5 1447 aa41.16■■■■■ 4.18
PABPN1-206ENST00000556809 CUX2O14529 1486 aa41.14■■■■■ 4.18
PABPN1-206ENST00000556809 KIF21AQ7Z4S6 1674 aa41.13■■■■■ 4.18
PABPN1-206ENST00000556809 THOC2Q8NI27 1593 aaKnown RBP41.04■■■■■ 4.16
PABPN1-206ENST00000556809 CFTRP13569 1480 aa41.04■■■■■ 4.16
PABPN1-206ENST00000556809 CCDC88BA6NC98 1476 aa40.99■■■■■ 4.15
PABPN1-206ENST00000556809 FANCD2Q9BXW9 1451 aa40.82■■■■■ 4.12
PABPN1-206ENST00000556809 MRC2Q9UBG0 1479 aa40.77■■■■■ 4.12
PABPN1-206ENST00000556809 CEP164Q9UPV0 1460 aa40.77■■■■■ 4.12
PABPN1-206ENST00000556809 PRDM2Q13029 1718 aa40.73■■■■■ 4.11
PABPN1-206ENST00000556809 WDR62O43379 1518 aa40.68■■■■■ 4.1
PABPN1-206ENST00000556809 SUPT5HO00267 1087 aaKnown RBP40.53■■■■■ 4.08
PABPN1-206ENST00000556809 URB2Q14146 1524 aaKnown RBP40.46■■■■■ 4.07
PABPN1-206ENST00000556809 TOPBP1Q92547 1522 aa40.16■■■■■ 4.02
PABPN1-206ENST00000556809 DNAJC5Q9H3Z4 198 aa40.13■■■■■ 4.01
PABPN1-206ENST00000556809 ABCC8Q09428 1581 aa40.13■■■■■ 4.01
PABPN1-206ENST00000556809 DNMBPQ6XZF7 1577 aa40.1■■■■■ 4.01
PABPN1-206ENST00000556809 IFT140Q96RY7 1462 aa39.94■■■■□ 3.98
PABPN1-206ENST00000556809 POLA1P09884 1462 aaPredicted RBP39.81■■■■□ 3.96
PABPN1-206ENST00000556809 CUX1P39880 1505 aa39.8■■■■□ 3.96
PABPN1-206ENST00000556809 ZNF608Q9ULD9 1512 aaPredicted RBP39.8■■■■□ 3.96
PABPN1-206ENST00000556809 TARBP1Q13395 1621 aaKnown RBP39.78■■■■□ 3.96
PABPN1-206ENST00000556809 FGD5Q6ZNL6 1462 aa39.67■■■■□ 3.94
PABPN1-206ENST00000556809 RAD54L2Q9Y4B4 1467 aa39.63■■■■□ 3.94
PABPN1-206ENST00000556809 EIF4G3O43432 1585 aaKnown RBP39.63■■■■□ 3.93
PABPN1-206ENST00000556809 SOGA1O94964 1423 aa39.61■■■■□ 3.93
PABPN1-206ENST00000556809 AQRO60306 1485 aaKnown RBP eCLIP39.54■■■■□ 3.926e-8■■■■□ 24.8
PABPN1-206ENST00000556809 WRNQ14191 1432 aaPredicted RBP eCLIP39.43■■■■□ 3.9
PABPN1-206ENST00000556809 WDR97A6NE52 1622 aa39.42■■■■□ 3.9
PABPN1-206ENST00000556809 TDRD9Q8NDG6 1382 aaKnown RBP39.42■■■■□ 3.9
PABPN1-206ENST00000556809 BIVM-ERCC5R4GMW8 1640 aa39.41■■■■□ 3.9
PABPN1-206ENST00000556809 TOP2BQ02880 1626 aa39.4■■■■□ 3.9
PABPN1-206ENST00000556809 SYNJ1O43426 1573 aa39.38■■■■□ 3.9
PABPN1-206ENST00000556809 OSCARQ8IYS5 282 aa39.37■■■■□ 3.89
PABPN1-206ENST00000556809 ABCA10Q8WWZ4 1543 aa39.3■■■■□ 3.88
PABPN1-206ENST00000556809 CHD1O14646 1710 aa39.18■■■■□ 3.86
PABPN1-206ENST00000556809 GRIN2BQ13224 1484 aa39.17■■■■□ 3.86
PABPN1-206ENST00000556809 ABCA5Q8WWZ7 1642 aa39.17■■■■□ 3.86
PABPN1-206ENST00000556809 GAPVD1Q14C86 1478 aa39.16■■■■□ 3.86
PABPN1-206ENST00000556809 SNAPC4Q5SXM2 1469 aa39.15■■■■□ 3.86
PABPN1-206ENST00000556809 PBRM1Q86U86 1689 aa39.12■■■■□ 3.85
PABPN1-206ENST00000556809 MAGI1Q96QZ7 1491 aaPredicted RBP39.1■■■■□ 3.85
PABPN1-206ENST00000556809 FBLN2P98095 1184 aa39.01■■■■□ 3.84
PABPN1-206ENST00000556809 SYNJ2O15056 1496 aa38.96■■■■□ 3.83
PABPN1-206ENST00000556809 CHMP7Q8WUX9 453 aaPredicted RBP38.91■■■■□ 3.82
PABPN1-206ENST00000556809 ERICH3Q5RHP9 1530 aa38.81■■■■□ 3.8
PABPN1-206ENST00000556809 RIMBP3CA6NJZ7 1639 aa38.81■■■■□ 3.8
PABPN1-206ENST00000556809 RIMBP3BA6NNM3 1639 aa38.81■■■■□ 3.8
PABPN1-206ENST00000556809 RIMBP3Q9UFD9 1639 aa38.81■■■■□ 3.8
PABPN1-206ENST00000556809 ADAMTS12P58397 1594 aa38.79■■■■□ 3.8
PABPN1-206ENST00000556809 ARHGEF11O15085 1522 aa38.77■■■■□ 3.8
PABPN1-206ENST00000556809 CLASP1Q7Z460 1538 aa38.77■■■■□ 3.8
PABPN1-206ENST00000556809 FHAD1B1AJZ9 1412 aa38.7■■■■□ 3.79
PABPN1-206ENST00000556809 GRIN2AQ12879 1464 aa38.69■■■■□ 3.78
PABPN1-206ENST00000556809 TRIM41Q8WV44 630 aa38.63■■■■□ 3.77
PABPN1-206ENST00000556809 KIF27Q86VH2 1401 aa38.61■■■■□ 3.77
PABPN1-206ENST00000556809 NUP160Q12769 1436 aa38.55■■■■□ 3.76
PABPN1-206ENST00000556809 IGF1RP08069 1367 aa38.53■■■■□ 3.76
PABPN1-206ENST00000556809 CEP170Q5SW79 1584 aa38.53■■■■□ 3.76
PABPN1-206ENST00000556809 ARAP1Q96P48 1450 aa38.45■■■■□ 3.75
PABPN1-206ENST00000556809 CUL7Q14999 1698 aa38.41■■■■□ 3.74
PABPN1-206ENST00000556809 CYB5RLQ6IPT4 315 aa38.37■■■■□ 3.73
PABPN1-206ENST00000556809 SHROOM2Q13796 1616 aa38.31■■■■□ 3.72
PABPN1-206ENST00000556809 CARMIL1Q5VZK9 1371 aa38.26■■■■□ 3.72
PABPN1-206ENST00000556809 RUSC2Q8N2Y8 1516 aa38.26■■■■□ 3.72
PABPN1-206ENST00000556809 ERCC6L2Q5T890 1561 aa38.22■■■■□ 3.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms